mRNA_Ecto-sp13_S_contig695.17949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig695.17949.1
Unique NamemRNA_Ecto-sp13_S_contig695.17949.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig695.17949.1 vs. uniprot
Match: D8LGB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB1_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 4.230e-31
Identity = 60/86 (69.77%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   76 LAPVQGNGLRALHSLPGREISRVRHACVAQPAEADWRQEVPTLLCYFGLPD---------PTGKTNGDSIQKIHYIHEDGSKSIDR 306
            LAPVQGNGLR  H+LPGREI RVRHACVAQPAEADWRQEVP L C F LPD         P  KTNGDS QKIHYIH DGS+ + +
Sbjct:   36 LAPVQGNGLRPRHALPGREIQRVRHACVAQPAEADWRQEVPPL-CVFLLPDRHRSRCPVHPADKTNGDSTQKIHYIHGDGSECVGK 120
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BLAST of mRNA_Ecto-sp13_S_contig695.17949.1 vs. uniprot
Match: A0A6H5LG67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG67_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.040e-17
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 3 
Query:  309 EDSNAPCAGCDHADVVLNDVMRVGKPRYFYSTRCAYTKRADINIDVQELSEIKRLER 479
            ED+ APCAGCD  DVVL+D+M + K  YFY + CAYTKRADI  DVQE SEIKRLER
Sbjct:  138 EDNTAPCAGCDSDDVVLHDMMGLRKTEYFYCSPCAYTKRADIITDVQEFSEIKRLER 194
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BLAST of mRNA_Ecto-sp13_S_contig695.17949.1 vs. uniprot
Match: D8LGB0_ECTSI (NAD dependent epimerase/dehydratase, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB0_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.070e-6
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 3 
Query:  387 RYFYSTRCAYTKRADINIDVQELSEIKRLER 479
            +YFY TRCAYTKRA INIDVQE SEIKRLER
Sbjct:  420 KYFYCTRCAYTKRAAINIDVQEFSEIKRLER 450
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig695.17949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGB1_ECTSI4.230e-3169.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LG67_9PHAE8.040e-1770.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB0_ECTSI2.070e-687.10NAD dependent epimerase/dehydratase, putative (Par... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig695contigEcto-sp13_S_contig695:15694..16669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size481
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_002730.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463954.3680947-UTR-Ecto-sp13_S_contig695:15693..158031681463954.3680947-UTR-Ecto-sp13_S_contig695:15693..15803Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig695 15694..15803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463954.3845248-CDS-Ecto-sp13_S_contig695:15803..159081681463954.3845248-CDS-Ecto-sp13_S_contig695:15803..15908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig695 15804..15908 -
1681463954.398852-CDS-Ecto-sp13_S_contig695:16111..161651681463954.398852-CDS-Ecto-sp13_S_contig695:16111..16165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig695 16112..16165 -
1681463954.4189966-CDS-Ecto-sp13_S_contig695:16203..162811681463954.4189966-CDS-Ecto-sp13_S_contig695:16203..16281Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig695 16204..16281 -
1681463954.440369-CDS-Ecto-sp13_S_contig695:16537..166691681463954.440369-CDS-Ecto-sp13_S_contig695:16537..16669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig695 16538..16669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig695.17949.1prot_Ecto-sp13_S_contig695.17949.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig695 15804..16669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig695.17949.1

>prot_Ecto-sp13_S_contig695.17949.1 ID=prot_Ecto-sp13_S_contig695.17949.1|Name=mRNA_Ecto-sp13_S_contig695.17949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
GHLRRARKPAPPTAQVYSRRRYAHDLAPVQGNGLRALHSLPGREISRVRH
ACVAQPAEADWRQEVPTLLCYFGLPDPTGKTNGDSIQKIHYIHEDGSKSI
DRARTATLLALGVTTPMSSLMM*
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mRNA from alignment at Ecto-sp13_S_contig695:15694..16669-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig695.17949.1 ID=mRNA_Ecto-sp13_S_contig695.17949.1|Name=mRNA_Ecto-sp13_S_contig695.17949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=976bp|location=Sequence derived from alignment at Ecto-sp13_S_contig695:15694..16669- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCATCTTCGACGAGCACGAAAACCAGCCCCGCCAACTGCCCAAGTTTA
CAGCAGACGACGCTACGCGCACGACTTGGCTCCAGTGCAAGGAAACGGAC
TTCGGGCCCTGCACTCTCTCCCGGGGCGAGAAGTGATTCTTCGCAGCAGG
AGTATCACATGACATCCTTGCCTTAGTTCGCGCAGCCGCGGCCGCCGCCG
TGCTCTTGAGTCGTCTTGCCCTTGTGGCGCCATGCGTTTGGATGTCGACC
CGTGGCTCCAAATGATATCGACCCGTTTACTCACAGTCACTGCATAAGCG
GTGATTTGCAGTTTTACGCTTGTACGTTGATTTGAGGCTCGAATTAGTCC
GCCTTTTAGAAACCATCTCAAAACCCCTTGTGCGGCAGATATCACGCGTG
CGACATGCATGTGTCGCTCAGCCAGCCGAAGCCGACTGGAGGCAGGAAGT
TCCGACCCTTTTGTGTGTTTCTTCTGCGAGACTGATATCAGCCCCGGTGT
CCAGTACTTCGGGCTCCCGGATCCCACCGGCAAAACGAACGGTGACAGTA
TCCAAAAGGTACGTCTTGTCCTGTGGTTTGTGGTTTCCCGGTTGCTGCAA
TCCTTGTTTTCTTTTTCCGTTCCTTTCGATAGCCACCCCATGTGGTCCGT
TTCTTTTCATTTTCCGTTGTTGTTGCACCGTCCGCTCAATGCCCGATAAC
CACCCCATGTTGTCCAAACAAGAGCTAATTTCCTGTCTTGCTCTATTGTT
GATTGTTGCAGATCCACTACATCCACGAGGATGGGTCCAAGAGTATCGAC
AGAGCGAGGACAGCAACGCTCCTTGCGCTGGGTGTGACCACGCCGATGTC
GTCCTTAATGATGTGATGAGGGTAGGCAAGCCACGGTACTTCTACAGCAC
CAGGTGCGCTTACACCAAGAGGGCGGACATCAATATCGACGTCCAGGAAC
TCTCCGAGATCAAGCGCCTCGAGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig695:15694..16669-

>mRNA_Ecto-sp13_S_contig695.17949.1 ID=mRNA_Ecto-sp13_S_contig695.17949.1|Name=mRNA_Ecto-sp13_S_contig695.17949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig695:15694..16669- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCATCTTCGACGAGCACGAAAACCAGCCCCGCCAACTGCCCAAGTTTA
CAGCAGACGACGCTACGCGCACGACTTGGCTCCAGTGCAAGGAAACGGAC
TTCGGGCCCTGCACTCTCTCCCGGGGCGAGAAATATCACGCGTGCGACAT
GCATGTGTCGCTCAGCCAGCCGAAGCCGACTGGAGGCAGGAAGTTCCGAC
CCTTTTGTGTTACTTCGGGCTCCCGGATCCCACCGGCAAAACGAACGGTG
ACAGTATCCAAAAGATCCACTACATCCACGAGGATGGGTCCAAGAGTATC
GACAGAGCGAGGACAGCAACGCTCCTTGCGCTGGGTGTGACCACGCCGAT
GTCGTCCTTAATGATGTGA
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