prot_Ecto-sp13_S_contig694.17936.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig694.17936.1
Unique Name	prot_Ecto-sp13_S_contig694.17936.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	209

Homology

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: D7FV33_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV33_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 4.230e-143
Identity = 199/208 (95.67%), Postives = 206/208 (99.04%), Query Frame = 0

Query:    1 MKITGATVLGMVATTQAFHIPANVKPSVSRRSSTSLGSAVEPLSDAEAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQQSGDTTPFYDPFKGWPKTEQEQEKMKMRELKNGRAAMLCWASFISAALIPGSVPDFALPF 208
            MKITGATVLGMVA+TQAFH+PANVKPSV+RRSSTSL SA+EPLSDAEAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEA QWKHQQSGDTTPFYDPFKGWPKTE++QEKMKMRELKNGRAAMLCWASF+SAALIPGSVPDFALPF
Sbjct:    1 MKITGATVLGMVASTQAFHMPANVKPSVARRSSTSLASALEPLSDAEAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAAQWKHQQSGDTTPFYDPFKGWPKTEKQQEKMKMRELKNGRAAMLCWASFVSAALIPGSVPDFALPF 208

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: A0A7S0ASU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASU6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.670e-33
Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = 0

Query:   57 GYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKH-----QQSGDTTPFYDPFKGWPKTEQEQEKMKMRELKNGRAAMLCWASFISAALIPGS 200
            G D+E+ GK  DPL+LA++IPA+  R+ E  + R AMLA VG+ FP   G FD+ DV S + + A+ +  P+ WAQ +  CG  EA ++K        +G+  P  D  KG+PK E E+ KM+++ELKNGR AM+  ASF+SA  IPGS
Sbjct:   49 GVDLESGGKFFDPLNLAQWIPAKWARETELANGRSAMLATVGWFFPYTLGTFDSQDVTSTDPMGAIMEADPQWWAQFVILCGTFEAYKYKKALEGKSYTGNGEPVIDYLKGYPKEEDERRKMELKELKNGRLAMIGVASFLSAHFIPGS 197

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: A0A7S1H281_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H281_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.940e-33
Identity = 72/156 (46.15%), Postives = 100/156 (64.10%), Query Frame = 0

Query:   53 EAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQ-----QSGDTTPFYDPFKGWPK-TEQEQEKMKMRELKNGRAAMLCWASFISAALIPGSVP 202
            E++ G DVET  K  DP  L+++IPAE  RK E  + R AMLA VG+ +P+ FG F + DV + + I+A+ Q  P+ WAQ I  CG+AE V+++ +      +GD  P  D  K W K ++ ++E +++RELKNGR AML  ASF SA  IPGSVP
Sbjct:   35 ESLVGMDVETGKKFFDPWELSQWIPAEHARKAELANGRSAMLATVGWFWPKFFGTFASDDVTTTDPIEAVMQADPQWWAQFIVLCGVAEFVKYQGELEGKSYTGDGEPVLDWTKTWSKLSDAKKEDIRLRELKNGRLAMLGIASFFSAHFIPGSVP 190

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: A0A7R9W903_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W903_9STRA)

HSP 1 Score: 126 bits (316), Expect = 8.390e-33
Identity = 73/179 (40.78%), Postives = 100/179 (55.87%), Query Frame = 0

Query:   35 SLGSAVEPLSDAEAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQQSGDTT-----PFYDPFKGWPKTEQEQEKMKMRELKNGRAAMLCWASFISAALIPGSVPDFALPF 208
            S GS    L  +   A  E + G DVET  K  DP   + YIPA+  R+ E  + R AMLA VG+ +PQIFG FD+TDV + + I A  +  P+ WAQ I  CG  EA +++    G ++     P  D  + +P  E+ +  M+++ELKNGR AM+  AS+ SA  IPGSVP     F
Sbjct:   23 SSGSKASSLQMSSMPADYEGMVGIDVETGNKFFDPCGFSNYIPAKWAREAELANGRSAMLASVGWLWPQIFGTFDSTDVTTTDPIKAFSEADPQWWAQFIIFCGTIEAYKYRKGLEGKSSTGGGEPAVDWMRSYPADEEGRRAMELKELKNGRLAMIAVASYFSAHFIPGSVPSLGYDF 201

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: A0A7S2RJJ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJJ1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.490e-31
Identity = 65/146 (44.52%), Postives = 90/146 (61.64%), Query Frame = 0

Query:   57 GYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQQSGDTTPFYDPFKGWPKTEQEQEKMKMRELKNGRAAMLCWASFISAALIPGSVP 202
            G   E   K  DPL LA+Y   + LR  ET + RVAMLA VG+ +PQIFG +    V++ + I+ L      AWAQ+I    + E + +KH+QSG T P +DP +  PK E+ ++ M  +ELKNGR AML +A+F+S   IPG+VP
Sbjct:   48 GATTEVGNKAFDPLKLAQYRDFDELRACETRNGRVAMLASVGWVWPQIFGTWAGGPVKTVDPIETLSAVPVAAWAQMILLASVFEVIDFKHKQSGSTEPVWDPLQLLPKEEKAKKAMMEKELKNGRLAMLAFAAFVSEHFIPGAVP 193

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: A0A7S2R2M8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2M8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.960e-31
Identity = 75/178 (42.13%), Postives = 101/178 (56.74%), Query Frame = 0

Query:   35 SLGSAVEPLSDAEAMASLEAIG-----GYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQQSGDT-----TPFYDPFKGWPKTEQEQEKMKMRELKNGRAAMLCWASFISAALIPGSVP 202
            S  +A  P + + +M +L+A       G DVET  K  DP  L+ YIPA+  R+ E  + R AMLA VGY FP  FG FD+TDV + + IDA+ Q  P+ WAQ I  CG  E V+++    G T      P  D    +PK E ++  M ++ELKNGR AM+  A F+S   IPG+VP
Sbjct:   12 SSAAAFAPATKSASMTALKASDYDSMIGIDVETGKKFFDPWGLSGYIPAKWAREAELSNGRSAMLATVGYVFPAYFGTFDSTDVTTTDPIDAILQADPQWWAQFILLCGAFEGVKYRCALEGKTFTGIGEPAVDYANLYPKEEAKRADMHLKELKNGRLAMIGIAGFVSNHFIPGAVP 189

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: A0A7S0PIU0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PIU0_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.960e-30
Identity = 69/168 (41.07%), Postives = 101/168 (60.12%), Query Frame = 0

Query:   47 EAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQQS-------GDTTPFYDPFKGWPKTEQEQEKMKMRELKNGRAAMLCWASFISAALIPGSVPDFALP 207
            +A +  E + G  VET GK  DP  +++Y+PA+  R+ E  + R AMLA VG+ +PQ+ G FD+ DV + + IDA+ Q  P+ WAQ I  CG+ E   WK+ ++       G   P  D  K +P    ++ +++ +ELKN R AM+ +ASF+SA  IPGSVP  ALP
Sbjct:   29 KAASDFEGMTGISVETGGKFFDPWGVSEYMPADWAREVELSNGRSAMLATVGWFWPQVVGTFDSNDVTTTDPIDAIMQADPQWWAQFIIFCGVIE--NWKYNKAKEGKSYTGGGEPAVDWMKLYPSDPAKRLELEEKELKNARLAMIGFASFVSAHFIPGSVP--ALP 192

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: A0A7S2D2F8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2F8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.220e-30
Identity = 64/146 (43.84%), Postives = 88/146 (60.27%), Query Frame = 0

Query:   57 GYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQQSGDTTPFYDPFKGWPKTEQEQEKMKMRELKNGRAAMLCWASFISAALIPGSVP 202
            G  VE   KP DPL LA +   + +R  E  + RVAMLA VG+ +PQ+FG+F++ DV + + I A+ Q APE W Q+    G  E++++KH+ SG   P +DP    PK   ++      ELKNGR AML  A++ SA  IPGSVP
Sbjct:   59 GATVEVGKKPFDPLGLAAWRDFDEMRACELKNGRVAMLASVGWVWPQMFGLFESDDVTTTDPIAAITQVAPEGWIQMFLLAGCFESLEYKHKMSGTDKPLWDPLDLMPKDPVKKAAKMESELKNGRLAMLSVAAYASAHFIPGSVP 204

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: B7G8E5_PHATC (Fucoxanthin chlorophyll a/c protein, deviant n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8E5_PHATC)

HSP 1 Score: 115 bits (288), Expect = 1.190e-28
Identity = 70/176 (39.77%), Postives = 104/176 (59.09%), Query Frame = 0

Query:   39 AVEPLSDAEAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQ-----QSGDTTPFYDPFKGWPKTEQEQ-EKMKMRELKNGRAAMLCWASFISAALIPGSVPDFALPF 208
            A + L+   A A L+ + G D+ET  K  DP+ LA++ PA+ LRK E  + R AMLA VG+ +P+I G FD+ DV + + I A+ +   + WAQ    CG+ EAV+++ +      +G+     D  K W K   +Q E M+++ELKNGR AML +AS+++   IPGSVP     F
Sbjct:   24 APQQLTKVGATAELDNMLGVDIETGKKIFDPVGLAQWAPADFLRKAELSNGRSAMLANVGWFWPKIVGTFDSQDVTTTDPIKAIAEADLQWWAQFFVFCGMLEAVKYRGELEGKSYTGEGPAVIDWAKQWDKLNADQKESMRLKELKNGRLAMLGFASYVANYYIPGSVPGLPAGF 199

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BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Match: A0A1Z5KCJ7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCJ7_FISSO)

HSP 1 Score: 113 bits (282), Expect = 8.170e-28
Identity = 63/159 (39.62%), Postives = 97/159 (61.01%), Query Frame = 0

Query:   50 ASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQ-----QSGDTTPFYDPFKGWPKTEQEQEK-MKMRELKNGRAAMLCWASFISAALIPGSVP 202
            A + ++ G   E   +  DPL L ++  AE LRK E  + R AMLA VG+ +P+I G FD+ DV + + IDA+ Q  P+ WAQ +  CG+ E V+++ +      +GD     D  K W K ++ ++  M+++ELKNGR AM+ +AS+++A  IPGSVP
Sbjct:   34 AEIASLPGISNECGNRVFDPLELGQWADAEFLRKAELSNGRSAMLANVGWFWPKIVGTFDSDDVTTTDPIDAILQADPQWWAQFLLLCGVIEGVKYRAELEGKSYTGDGPAAIDWAKQWDKLDKTKKADMRLKELKNGRLAMIGFASYVAAYFIPGSVP 192

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig694.17936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FV33_ECTSI	4.230e-143	95.67	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A7S0ASU6_9STRA	3.670e-33	45.64	Hypothetical protein (Fragment) n=1 Tax=Minutocell...	[more]
A0A7S1H281_9STRA	7.940e-33	46.15	Hypothetical protein n=1 Tax=Thalassionema nitzsch...	[more]
A0A7R9W903_9STRA	8.390e-33	40.78	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S2RJJ1_9STRA	2.490e-31	44.52	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2R2M8_9STRA	5.960e-31	42.13	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]
A0A7S0PIU0_9STRA	4.960e-30	41.07	Hypothetical protein n=1 Tax=Leptocylindrus aporus...	[more]
A0A7S2D2F8_9STRA	5.220e-30	43.84	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
B7G8E5_PHATC	1.190e-28	39.77	Fucoxanthin chlorophyll a/c protein, deviant n=3 T...	[more]
A0A1Z5KCJ7_FISSO	8.170e-28	39.62	Uncharacterized protein n=2 Tax=Fistulifera solari...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 56..206 e-value: 5.7E-23 score: 83.7
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 62..195 e-value: 2.9E-23 score: 83.2
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 23..202
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 18..208
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..13
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 68..200
None	No IPR available	TMHMM	TMhelix		coord: 184..206
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 23..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig694	contig	Ecto-sp13_S_contig694:7973..10958 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig694.17936.1	mRNA_Ecto-sp13_S_contig694.17936.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig694 6131..10958 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig694.17936.1 ID=prot_Ecto-sp13_S_contig694.17936.1|Name=mRNA_Ecto-sp13_S_contig694.17936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
MKITGATVLGMVATTQAFHIPANVKPSVSRRSSTSLGSAVEPLSDAEAMA
SLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYA
FPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAVQWKHQQS
GDTTPFYDPFKGWPKTEQEQEKMKMRELKNGRAAMLCWASFISAALIPGS
VPDFALPF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln