mRNA_Ecto-sp13_S_contig6935.17928.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6935.17928.1
Unique NamemRNA_Ecto-sp13_S_contig6935.17928.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6935.17928.1 vs. uniprot
Match: D7G7H0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H0_ECTSI)

HSP 1 Score: 600 bits (1546), Expect = 8.150e-212
Identity = 337/403 (83.62%), Postives = 354/403 (87.84%), Query Frame = 1 
Query:    1 MFLASMGRLKHKRTRNTIAAEETPRSSCPSDFDPTPSPAADPGIPSNTEKHKTISVNNMEKEAGVNGISAPVPHAGTRGAAAAGRASDWPGDNPGAKHANSGNAVRDRKDFRTPAWSPPRSSSPTARRHDQDADSHPRNHGIANADDDLLPAKGPAEGNLGGRAASSAAGAKFPSAEDVAPETRLMPVGVIHRAFKGRRLAAVQAWDPLAAAAVRAKRAEKMLRRAFLRRTGTNSGETMPAAAPARRRPRKAPGTKAAATITTENKVGGGASDRGGGVGGSRKCSSARRVGGPAERAVGRKGSEGDNKSDADWCGSRGLKRDARRELSRKELARAVAAVERIGGSRIVHGAWAPLKPALGGTPADANALSTRKRDAVESVSCPSRGSIKTSKSRSASGSSRET 1209
            MFLASMGRLKHKRTRNTIAAEETPRSSC S+ DPT +  ADPGIP  TEKH+T SV N+E EA V G+SAPV +A TRGAAA GRASDWPGDNPG KH NSG AV DRK FRTPAWSPPR  SPTA+R+DQDADSHPRNHGI+N  DDLLPAKGP EGNLG RAASSA  AKFP+ EDVA ETRLMPVG +HRAFKGRRLAAVQAWDPLAAAAVRA+RAEKMLRRA L RT  NSGETMPAAAPARRRPRKAPGTKAAAT TTE+KVGG  SDRGGGVGG+RKCSSARRVGGPAERAVGR GS GD+KSDADWCGSRGL+RDARRE SR ELAR VAAVERIGGSRIVHGA AP KPA+GGTPA AN LSTRKRDAVE  SCPSRGSIKTSKSRSASGSSRET
Sbjct:    1 MFLASMGRLKHKRTRNTIAAEETPRSSCSSEADPTAALVADPGIPKTTEKHQTNSVKNIENEAVVKGVSAPVQYAETRGAAAVGRASDWPGDNPGVKHMNSGKAVGDRKGFRTPAWSPPRPLSPTAKRNDQDADSHPRNHGISNGGDDLLPAKGPTEGNLGARAASSATSAKFPTGEDVAAETRLMPVGALHRAFKGRRLAAVQAWDPLAAAAVRAERAEKMLRRALLGRTRANSGETMPAAAPARRRPRKAPGTKAAATTTTEHKVGGIGSDRGGGVGGARKCSSARRVGGPAERAVGRGGSLGDSKSDADWCGSRGLRRDARREPSRTELARTVAAVERIGGSRIVHGAGAPSKPAVGGTPAGANDLSTRKRDAVEGGSCPSRGSIKTSKSRSASGSSRET 403
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BLAST of mRNA_Ecto-sp13_S_contig6935.17928.1 vs. uniprot
Match: A0A6H5KIE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE2_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 2.010e-115
Identity = 253/535 (47.29%), Postives = 267/535 (49.91%), Query Frame = 1 
Query:    1 MFLASMGRLKHKRTRNTIAAEETPRSSCPSDFDPTPSPAADPGIPSNTEKHKTISVNNMEKEAGVNGISAPVPHAGTRGAAAAGRASDWPGDNPGAKHANSGNAVRDRKDFRTPAWSPPRSSSPTARRHDQDADSHPRNHGIANADDDLLPAKGPAEGNLGGRAASS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAKFPSAEDVAPETRLMPVGVIHRAFKGRRLAAVQAWDPLAAAAVRAKRAEKMLRRAFLRRTGTNSGETMPAAAPARRRPRKAPGTKAAATITTENKVGGGASDRGGGVGGSRKCSSARRVGGPAERAVGRKGSEGDNKSDADWCGSRGLKRDARR 975
            MFLASMGRLKHKRTRNTIAAEETPRSSCPS+  P  +PAA+ GIP+ TE+H+TIS +N EKEA V G SAP+PHAGTRGA AAGRASDWPGDNPG KH +SG AV DR   RTPAWSPPR  SP+ARRHDQDADSHPRNHGIAN DDDLLPAK  AEGNLG RAASS                                                                                                                                                                                                                  AAGAKF SAEDVA ETRLMPVGVIHRAFKGRRLAAVQAWDPLAAAAVRA+RAEKMLRRAFL RTGTNS E MPAAAPARRRPRKAPGTK A                       RKCSSARR GGPAER +GR GSEGD+KS ADWCGSRGL+RDARR
Sbjct:    1 MFLASMGRLKHKRTRNTIAAEETPRSSCPSEAGPKAAPAAESGIPNCTEEHQTISGHNTEKEAVVMGASAPLPHAGTRGATAAGRASDWPGDNPGVKHVSSGKAVGDRTGLRTPAWSPPRPLSPSARRHDQDADSHPRNHGIANGDDDLLPAKDLAEGNLGARAASSGKLGCPSPTARQHRCGRPRSACTRGHQPRSLGVVMLSSGNPDTSTEWAETVGDVPLQVGPTITAPRAKDVAHRGVASPFALLPPRPASARVLEQGARARNARQGVNSSSATIARRGVHSRGLDRGTRRPCGDGGASPGRSPDGKDDPAWRDTANACYSTERGSFTASVLNSARALPEYDLRPKGDGSFTVRTKGDQRPKSANAAAASVNAAAGAKFSSAEDVAAETRLMPVGVIHRAFKGRRLAAVQAWDPLAAAAVRAERAEKMLRRAFLGRTGTNSRE-MPAAAPARRRPRKAPGTKGAXXXXXXXXXXXXXXXXXXXXXXXRKCSSARRAGGPAERTIGRGGSEGDSKSHADWCGSRGLRRDARR 534
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6935.17928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7H0_ECTSI8.150e-21283.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIE2_9PHAE2.010e-11547.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6935contigEcto-sp13_S_contig6935:13..2004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1212
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000240.1
Cds size1212
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463952.5054712-CDS-Ecto-sp13_S_contig6935:12..2501681463952.5054712-CDS-Ecto-sp13_S_contig6935:12..250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6935 13..250 -
1681463952.516073-CDS-Ecto-sp13_S_contig6935:400..8721681463952.516073-CDS-Ecto-sp13_S_contig6935:400..872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6935 401..872 -
1681463952.5249648-CDS-Ecto-sp13_S_contig6935:1502..20041681463952.5249648-CDS-Ecto-sp13_S_contig6935:1502..2004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6935 1503..2004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6935.17928.1prot_Ecto-sp13_S_contig6935.17928.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6935 13..2004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6935.17928.1

>prot_Ecto-sp13_S_contig6935.17928.1 ID=prot_Ecto-sp13_S_contig6935.17928.1|Name=mRNA_Ecto-sp13_S_contig6935.17928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=404bp
MFLASMGRLKHKRTRNTIAAEETPRSSCPSDFDPTPSPAADPGIPSNTEK
HKTISVNNMEKEAGVNGISAPVPHAGTRGAAAAGRASDWPGDNPGAKHAN
SGNAVRDRKDFRTPAWSPPRSSSPTARRHDQDADSHPRNHGIANADDDLL
PAKGPAEGNLGGRAASSAAGAKFPSAEDVAPETRLMPVGVIHRAFKGRRL
AAVQAWDPLAAAAVRAKRAEKMLRRAFLRRTGTNSGETMPAAAPARRRPR
KAPGTKAAATITTENKVGGGASDRGGGVGGSRKCSSARRVGGPAERAVGR
KGSEGDNKSDADWCGSRGLKRDARRELSRKELARAVAAVERIGGSRIVHG
AWAPLKPALGGTPADANALSTRKRDAVESVSCPSRGSIKTSKSRSASGSS
RETS
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mRNA from alignment at Ecto-sp13_S_contig6935:13..2004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6935.17928.1 ID=mRNA_Ecto-sp13_S_contig6935.17928.1|Name=mRNA_Ecto-sp13_S_contig6935.17928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6935:13..2004- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGGCTTCCATGGGACGACTCAAGCACAAACGAACACGGAACAC
TATCGCTGCAGAGGAGACCCCGCGCTCGTCCTGCCCTTCCGACTTCGACC
CGACACCATCGCCGGCGGCAGACCCAGGGATTCCCAGCAACACCGAAAAA
CACAAGACCATTAGTGTCAACAACATGGAAAAAGAAGCCGGTGTCAATGG
CATCTCGGCCCCTGTTCCACACGCCGGGACCCGCGGTGCTGCGGCCGCGG
GAAGAGCTTCAGATTGGCCTGGCGACAACCCAGGCGCGAAGCACGCAAAC
AGCGGCAACGCTGTGAGAGACCGGAAGGACTTTCGCACGCCGGCATGGTC
ACCTCCACGGTCGTCGTCACCTACTGCTAGGCGCCACGACCAAGACGCTG
ACTCCCATCCCAGAAACCACGGTATTGCCAATGCTGATGACGACCTATTG
CCAGCGAAGGGACCCGCTGAAGGGAACCTTGGCGGAAGGGCAGCGTCCTC
GGGTAAGTTGGGTTGTCCGTCGCCCAGAGCTCGGCAGTACGGCCGCGGCC
GCCCTCGGTCTGCTTGCACGAGGGGACACCGGTCTCACTCACCCGGAGTC
GTCATGCTCAGCTCCGGAAACCCCAATACCAGCACCAAGTGGGCCGAAAC
GGCGGTAGATGTTCCGCTTCAAGTTGGTCCAACTATTACAGCACCCCCGG
CCAAGGACGTAGCGCCCCGTGGCGTAGTAGCACCGTCCGCCTTAAGGCCT
CCTCGTCCAGCATCTGCGAGAGTGCTGGAGCAAGGGGCGAGAGAAAGAAA
ATCACGGCAAGCTGTGAATAGCAGCCCGGCCACAACTGCGCGTCGAGGTG
TCGACAGTCGTGGGCTTGAGCGCGGTACCAGGCGTCCTTGCGGTGACGGT
GGAGCTTCTCCTGGACGTAGTCCCGATGGGAAGGACGATCCAGCATGGCG
TGACACAGCTAACGCCTGTTACTCTGCGGAACGAGGGTCATTCGCCGCAA
GCGTCTTGAATAGCGCGCGCGCCTTGGCTGAGTACGACCTTCGACCCAAA
GGCGACGGCTCCTTCAACGTGCGGACCAAGGGCGACCAAAGACCCAAAAG
CGCTATCGCTGCTGCCCCCACCGTCAACGCAGCCGCTGGCGCCAAGTTTC
CCAGTGCGGAAGACGTTGCACCGGAGACTCGACTCATGCCCGTCGGCGTT
ATCCACAGGGCCTTCAAGGGTCGTCGCTTGGCGGCGGTGCAGGCATGGGA
CCCGCTTGCCGCAGCCGCTGTCCGCGCAAAAAGGGCCGAGAAGATGCTTC
GACGGGCCTTCCTGCGAAGAACAGGGACCAACAGTGGAGAAACGATGCCG
GCCGCAGCTCCTGCTCGCCGTCGGCCGCGAAAAGCACCAGGGACTAAGGC
AGCAGCGACGATTACAACAGAAAACAAAGTTGGCGGGGGCGCCAGCGATC
GGGGAGGTGGAGTAGGAGGGTCAAGAAAGTGCTCCTCTGCACGAAGAGTC
GGTGGTCCGGCTGAACGGGCTGTTGGAAGAAAAGGGAGCGAGGGCGACAA
CAAAAGCGATGCTGATTGGTGCGGTTCCCGTGGTTTGAAAAGGGACGCCA
GAAGGTGAAAGAGAGTCTGACACAGAGGTATGTGCAGGCGTGTTTAGCAT
GGCCATTTGTCGCAGGTAAGACTAGGAACGATTTCCGGCCTACGCCGATC
AACACTACTGCTTTTTTGGGTACGCAACCGGATGTACCCATCCTTTCGAG
GCAGGGAGCTGTCTAGAAAGGAACTCGCTCGGGCTGTTGCTGCGGTTGAG
AGGATAGGAGGAAGCCGGATTGTACACGGTGCCTGGGCACCTTTGAAGCC
CGCGTTGGGAGGCACCCCGGCTGACGCGAACGCTCTCAGCACCAGGAAAC
GTGACGCCGTCGAGAGTGTGTCGTGCCCATCACGCGGGTCAATCAAGACT
TCCAAGTCACGTTCGGCGAGCGGCTCCTCCAGAGAAACCAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6935:13..2004-

>mRNA_Ecto-sp13_S_contig6935.17928.1 ID=mRNA_Ecto-sp13_S_contig6935.17928.1|Name=mRNA_Ecto-sp13_S_contig6935.17928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6935:13..2004- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGGCTTCCATGGGACGACTCAAGCACAAACGAACACGGAACAC
TATCGCTGCAGAGGAGACCCCGCGCTCGTCCTGCCCTTCCGACTTCGACC
CGACACCATCGCCGGCGGCAGACCCAGGGATTCCCAGCAACACCGAAAAA
CACAAGACCATTAGTGTCAACAACATGGAAAAAGAAGCCGGTGTCAATGG
CATCTCGGCCCCTGTTCCACACGCCGGGACCCGCGGTGCTGCGGCCGCGG
GAAGAGCTTCAGATTGGCCTGGCGACAACCCAGGCGCGAAGCACGCAAAC
AGCGGCAACGCTGTGAGAGACCGGAAGGACTTTCGCACGCCGGCATGGTC
ACCTCCACGGTCGTCGTCACCTACTGCTAGGCGCCACGACCAAGACGCTG
ACTCCCATCCCAGAAACCACGGTATTGCCAATGCTGATGACGACCTATTG
CCAGCGAAGGGACCCGCTGAAGGGAACCTTGGCGGAAGGGCAGCGTCCTC
GGCCGCTGGCGCCAAGTTTCCCAGTGCGGAAGACGTTGCACCGGAGACTC
GACTCATGCCCGTCGGCGTTATCCACAGGGCCTTCAAGGGTCGTCGCTTG
GCGGCGGTGCAGGCATGGGACCCGCTTGCCGCAGCCGCTGTCCGCGCAAA
AAGGGCCGAGAAGATGCTTCGACGGGCCTTCCTGCGAAGAACAGGGACCA
ACAGTGGAGAAACGATGCCGGCCGCAGCTCCTGCTCGCCGTCGGCCGCGA
AAAGCACCAGGGACTAAGGCAGCAGCGACGATTACAACAGAAAACAAAGT
TGGCGGGGGCGCCAGCGATCGGGGAGGTGGAGTAGGAGGGTCAAGAAAGT
GCTCCTCTGCACGAAGAGTCGGTGGTCCGGCTGAACGGGCTGTTGGAAGA
AAAGGGAGCGAGGGCGACAACAAAAGCGATGCTGATTGGTGCGGTTCCCG
TGGTTTGAAAAGGGACGCCAGAAGGGAGCTGTCTAGAAAGGAACTCGCTC
GGGCTGTTGCTGCGGTTGAGAGGATAGGAGGAAGCCGGATTGTACACGGT
GCCTGGGCACCTTTGAAGCCCGCGTTGGGAGGCACCCCGGCTGACGCGAA
CGCTCTCAGCACCAGGAAACGTGACGCCGTCGAGAGTGTGTCGTGCCCAT
CACGCGGGTCAATCAAGACTTCCAAGTCACGTTCGGCGAGCGGCTCCTCC
AGAGAAACCAGT
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