mRNA_Ecto-sp13_S_contig69197.17907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69197.17907.1
Unique NamemRNA_Ecto-sp13_S_contig69197.17907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69197.17907.1 vs. uniprot
Match: A0A7S2FAX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FAX3_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.270e-5
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   55 ACGRGGCWERAVRLVDDMHAEGLVPDSLTYRRVIG 159
            ACG+GG W+RA+R++++MH  G+ PD ++Y   IG
Sbjct:    1 ACGKGGKWDRALRILEEMHRSGVAPDIISYSTAIG 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69197.17907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2FAX3_9STRA4.270e-548.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69197contigEcto-sp13_S_contig69197:414..665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size252
Hectar predicted targeting categorysignal peptide
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463950.4340112-CDS-Ecto-sp13_S_contig69197:413..6651681463950.4340112-CDS-Ecto-sp13_S_contig69197:413..665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69197 414..665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69197.17907.1prot_Ecto-sp13_S_contig69197.17907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69197 414..665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69197.17907.1

>prot_Ecto-sp13_S_contig69197.17907.1 ID=prot_Ecto-sp13_S_contig69197.17907.1|Name=mRNA_Ecto-sp13_S_contig69197.17907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
ATCLSLLLPRGTNAVAHQACGRGGCWERAVRLVDDMHAEGLVPDSLTYRR
VIGARCGLVAVNDGALVPVSREGGLVPAHRERL*
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mRNA from alignment at Ecto-sp13_S_contig69197:414..665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69197.17907.1 ID=mRNA_Ecto-sp13_S_contig69197.17907.1|Name=mRNA_Ecto-sp13_S_contig69197.17907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69197:414..665- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGTGTCTGTCCCTCCTCCTGCCTCGTGGGACGAACGCTGTGGCGCA
TCAGGCGTGCGGCCGAGGGGGATGCTGGGAACGAGCGGTGCGACTCGTGG
ACGACATGCACGCTGAGGGGCTGGTTCCGGACAGCCTGACGTACAGGCGA
GTCATTGGAGCACGTTGCGGCTTAGTCGCGGTGAATGACGGAGCGCTGGT
GCCTGTCTCGAGGGAGGGAGGTCTAGTTCCAGCCCACCGAGAGCGATTGT
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69197:414..665-

>mRNA_Ecto-sp13_S_contig69197.17907.1 ID=mRNA_Ecto-sp13_S_contig69197.17907.1|Name=mRNA_Ecto-sp13_S_contig69197.17907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69197:414..665- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGTGTCTGTCCCTCCTCCTGCCTCGTGGGACGAACGCTGTGGCGCA
TCAGGCGTGCGGCCGAGGGGGATGCTGGGAACGAGCGGTGCGACTCGTGG
ACGACATGCACGCTGAGGGGCTGGTTCCGGACAGCCTGACGTACAGGCGA
GTCATTGGAGCACGTTGCGGCTTAGTCGCGGTGAATGACGGAGCGCTGGT
GCCTGTCTCGAGGGAGGGAGGTCTAGTTCCAGCCCACCGAGAGCGATTGT
AG
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