mRNA_Ecto-sp13_S_contig6917.17905.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6917.17905.1
Unique NamemRNA_Ecto-sp13_S_contig6917.17905.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6917.17905.1 vs. uniprot
Match: D8LJY4_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJY4_ECTSI)

HSP 1 Score: 657 bits (1695), Expect = 1.570e-233
Identity = 376/411 (91.48%), Postives = 380/411 (92.46%), Query Frame = 1 
Query:   64 MPPTPHRTRVRPSPSTSKSPRRRGLAAEFVDSDNDEAACCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTDVVFDSVNPSWEDNRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETD-VNGGGNNPYTPMSPSATTTPTTSLASSFVKAALSLPHKPRASGGAGDGAAA--VQAELLALSPRTVTRGTEKKNGISATKSPALAKSSSLPGTEKAAXXXXXXXXXXXXGGGGSGCYGSAAAVAQEDLLPLSPRMARGAEAAXXXXXXXXX---RGRGCSKGDGAGGWSLKSFFFGVVFSALLVLGGLWAVGVPLLSGQLGFGLRVLEDGENGRQAVVLIHGS 1278
            MPPTPHRTRVRPSPSTSKSPRRRGLAAEFVDSDNDEA+CCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTDVVFDSVNPSWE+NRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETD VN GGNNPY PMSPS       SLASSFVKAALSLPHKPR SGGAGDGAAA  VQAELLALSPRT TRGTEKK  +SATKSPALA+ SSLPGTEKAAXXXXXXXXXXXX    S  YGSAAAVAQEDLLPLSPRMARGAEAAXXXXXXXXX   RGRG SKG  AGGWS KSFF GVVFSALLVLGGLWAVGVPLLSGQLGFGLRVLEDGENGRQAVVLIHGS
Sbjct:    1 MPPTPHRTRVRPSPSTSKSPRRRGLAAEFVDSDNDEASCCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTDVVFDSVNPSWENNRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETDDVNRGGNNPYPPMSPSXXXXXXXSLASSFVKAALSLPHKPRTSGGAGDGAAAAAVQAELLALSPRTATRGTEKKKAMSATKSPALARVSSLPGTEKAAXXXXXXXXXXXXXXXXSDRYGSAAAVAQEDLLPLSPRMARGAEAAXXXXXXXXXXXARGRGYSKGGSAGGWSWKSFFCGVVFSALLVLGGLWAVGVPLLSGQLGFGLRVLEDGENGRQAVVLIHGS 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6917.17905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJY4_ECTSI1.570e-23391.48C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6917contigEcto-sp13_S_contig6917:88..3047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1292
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-06_007450.1
Cds size1290
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463950.290437-CDS-Ecto-sp13_S_contig6917:87..8701681463950.290437-CDS-Ecto-sp13_S_contig6917:87..870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6917 88..870 -
1681463950.3047004-CDS-Ecto-sp13_S_contig6917:1502..16491681463950.3047004-CDS-Ecto-sp13_S_contig6917:1502..1649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6917 1503..1649 -
1681463950.3189266-CDS-Ecto-sp13_S_contig6917:2280..24241681463950.3189266-CDS-Ecto-sp13_S_contig6917:2280..2424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6917 2281..2424 -
1681463950.333312-CDS-Ecto-sp13_S_contig6917:2831..30471681463950.333312-CDS-Ecto-sp13_S_contig6917:2831..3047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6917 2832..3047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6917.17905.1prot_Ecto-sp13_S_contig6917.17905.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6917 88..3047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6917.17905.1

>prot_Ecto-sp13_S_contig6917.17905.1 ID=prot_Ecto-sp13_S_contig6917.17905.1|Name=mRNA_Ecto-sp13_S_contig6917.17905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=430bp
GSSNQQHQLLRCVCYLKLSILMPPTPHRTRVRPSPSTSKSPRRRGLAAEF
VDSDNDEAACCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTD
VVFDSVNPSWEDNRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVA
LSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVG
RPALDETDVNGGGNNPYTPMSPSATTTPTTSLASSFVKAALSLPHKPRAS
GGAGDGAAAVQAELLALSPRTVTRGTEKKNGISATKSPALAKSSSLPGTE
KAAASSCSSSAGTHRGGGGSGCYGSAAAVAQEDLLPLSPRMARGAEAAAA
AAAAEAARGRGCSKGDGAGGWSLKSFFFGVVFSALLVLGGLWAVGVPLLS
GQLGFGLRVLEDGENGRQAVVLIHGSVSGG
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mRNA from alignment at Ecto-sp13_S_contig6917:88..3047-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6917.17905.1 ID=mRNA_Ecto-sp13_S_contig6917.17905.1|Name=mRNA_Ecto-sp13_S_contig6917.17905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6917:88..3047- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCAGCAACCAACAACACCAGCTGCTTAGGTGTGTTTGCTACTTAAA
ACTCTCGATTTTGATGCCTCCCACGCCTCACCGGACCCGAGTCCGGCCCA
GCCCAAGCACGAGCAAGTCCCCACGACGCAGGGGGCTCGCCGCGGAGTTC
GTCGACTCGGACAACGATGAAGCCGCGTGTTGCGCTCGGTATCACGTCTC
GGTCCGCAGTGCAAAGGTAACACACGCCGGTGCTGCTGGTGCTGCGTTTC
CTGCAGCAGCAGTAGGAGTGGGGAGGTACATAGTGGAAGCAGGGGAGACG
GTGGGGCAGTGCGCTTTCGGTCGGGGGGGGGGTAGGGGAGAGGAAGGCAA
TATACAAGAGTTCGACGCCCTCTCGGGGCAAGTGGCGATCCATTTTCCGT
TGGCCAACATGTACGCGTAAGACCTTTTGGGGCGATGATGTTGTTGTCGC
TGTCGAGGGCTTTTAGGTGGGTGCAGAGGGAACACGACCCCAACACGGCG
GTCGCACAGATCTGGCACGCCTCTGACGCGTCTCTCCCGTGTCGCATCGA
TCGCGTGTGGTCGCTCTGTCTGTCGGTGTGTGTGTCTTTCTCGCTCTCCC
TCTCTCTTTAACTCTCCCCTCAGAACCTGAAGCGAGAGGGATTCCGCGGG
CTGACAAACCCGTACTGCCAGCTGAACGTGGGGAGGCAAGGCCCTTACAC
CACCGATGTCGTCTTCGACTCCGTCAACCCTTCGTGGGAAGACAATCGCC
AGACTTTCGAGTTCAGGGTGAGTGTTGTTGACGTGTGGAGATGATGATGG
GAGAGGAAGTTGAGAGTCAAATCGTCAACGCGGACCAGCAGGTGTTGCGT
CACGTATGGTGTGCGGGGTCACCCCCCTCCACCGAGGCCGCTACCAAGAG
AAAGCAAGTACGCGCCTTCCTAATGCAGGTACTTGGCTTGCCGAGGGTGT
TTTCGTTGCTTGATGGGAATCCAGAGCTACTTTATTGAAATGCTTCCTCC
TTGTGACGACGCGAAACCGAGCGGGACAGGAGAAGATACCGACGCGTGTT
GCCAAACGGAAACACTCCGCAAACCGAGAGCAGCGGTATATGAACATGCT
CGTCTTTCCTCTTGATGAGAATCGCCGGAGGAGGGCATCATGTGTTCTAC
CGCTTCCTATTTTGATGTACGCTGCTGCGGCACCTACAGCAGCGCATCGC
CGCGCGCCCAGGGTGGGCATCATTATTACAGCACGCCCTCCTCCTCTCGT
TCGCTCTACAAGCTATTTACCCTCGTGTTTACACCCATGTCTGCTACTGC
TGTAATGCTAACATCCACCTCCCGCCCCACGGAAGGCCTTTGAACCCGGC
GCGCTTGTCGCGACGACCATCGCCCCCCCCCGTCCCCGTCCCGAAAAGGA
GGCAAAGGGTCCGCAGGAGGATAAGCTGACGCTAGCATGCTTCAATTCTG
GGGACGTACCCGAGCTGATCGGAAGGCTGAGTGTGGCCCTGTCCCACGCC
ACCCACAAGGTCATCAGCCTTCCCATGTTCCGCAAAGACCTCGGGGTGAG
TTGCTTGGCGTCCACCTGTTCGGTGTTTCCTCTGCTCTCATTTTATCTTC
TGGCTCGGGCTGGTCGGTTAGGCTATGTTCTTGGTGCCGGTCAGCTTAAC
TCGCGTATTGCTCCTCGTTATCTGCTGAGACTGCTTTGGGGTTTGGTTAA
ACCAAGCAAGCGATTAGAATTTCACACCACCAGTTGATGGGGATGTCAGT
CAACTATTGTACAACAAGTGCGGTGCCTCAGGCCTACGTCAAAACGTTGT
TGTTTGCTGCTTTCCTCTGCGGTGTGTGTATTTTTTTTCTTTTCGGGACA
AACGCAGCACCTGCTTTCAGTATGCTTGTCATTGTCTCCGCACCCTGAAC
ATGTCGAAGGGACCAAGTGGCCTTTACAGCTGAAAAGAAATAAATCACCG
GCGTTCCCCGAGGTCGCTGGCCAGAACGGAAACTTGGCCAACAGAAAAGA
GCAGGGCTTCCTTTCACTCCGTCGCCATTGCCCTACAAAATCCCCTTCCC
GTAGAAATGCACGTTTCCCGACTTTGTCCTTCCCCCCGACCTTCATCCTT
CCCTCGCCGCTCCACGTCGATCATTTTACCAAACGACGCACAAACGCTAC
GCCTCGACATCGTACCTACCGCGCCAGGGGTCCCAAGTCTGGGCGGGTAG
CGTTGAGATCGAGCTCCACTACATCCCGGAAGGCGAGGCGGGGTCCCCGG
CTCGCGGCGGACGGGTAGGTAGGCCCGCTCTTGACGAGACTGATGTCAAC
GGTGGCGGCAACAACCCCTACACGCCCATGTCCCCGTCCGCGACGACGAC
GCCGACGACGTCCCTCGCCTCTTCCTTCGTCAAGGCGGCCTTGTCCTTGC
CGCACAAGCCGCGGGCCTCCGGCGGTGCCGGCGACGGCGCGGCAGCGGTG
CAGGCGGAGCTGCTGGCCCTCTCTCCGCGGACGGTGACGAGGGGAACGGA
GAAGAAAAATGGGATATCGGCTACGAAGTCGCCGGCGTTGGCAAAATCCA
GCTCTCTGCCGGGCACGGAGAAAGCGGCAGCCTCGTCCTGTTCCTCCTCC
GCAGGAACCCACAGGGGAGGCGGCGGGAGCGGCTGCTACGGCTCCGCCGC
GGCGGTGGCCCAGGAGGACCTGCTGCCCCTGTCGCCGAGGATGGCGAGGG
GGGCCGAGGCGGCGGCGGCGGCTGCCGCGGCAGAGGCCGCCCGGGGGCGG
GGTTGCAGCAAGGGCGACGGCGCGGGAGGTTGGAGCTTGAAGTCGTTCTT
CTTCGGGGTTGTGTTCTCGGCGCTGCTCGTGTTGGGGGGGTTGTGGGCTG
TCGGCGTTCCGCTGTTGTCCGGACAGCTTGGGTTCGGCCTGAGGGTCCTG
GAGGACGGCGAGAACGGTCGGCAAGCGGTTGTTCTCATACACGGCTCGGT
AAGCGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6917:88..3047-

>mRNA_Ecto-sp13_S_contig6917.17905.1 ID=mRNA_Ecto-sp13_S_contig6917.17905.1|Name=mRNA_Ecto-sp13_S_contig6917.17905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6917:88..3047- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCAGCAACCAACAACACCAGCTGCTTAGGTGTGTTTGCTACTTAAA
ACTCTCGATTTTGATGCCTCCCACGCCTCACCGGACCCGAGTCCGGCCCA
GCCCAAGCACGAGCAAGTCCCCACGACGCAGGGGGCTCGCCGCGGAGTTC
GTCGACTCGGACAACGATGAAGCCGCGTGTTGCGCTCGGTATCACGTCTC
GGTCCGCAGTGCAAAGAACCTGAAGCGAGAGGGATTCCGCGGGCTGACAA
ACCCGTACTGCCAGCTGAACGTGGGGAGGCAAGGCCCTTACACCACCGAT
GTCGTCTTCGACTCCGTCAACCCTTCGTGGGAAGACAATCGCCAGACTTT
CGAGTTCAGGGAGGCAAAGGGTCCGCAGGAGGATAAGCTGACGCTAGCAT
GCTTCAATTCTGGGGACGTACCCGAGCTGATCGGAAGGCTGAGTGTGGCC
CTGTCCCACGCCACCCACAAGGTCATCAGCCTTCCCATGTTCCGCAAAGA
CCTCGGGGGGTCCCAAGTCTGGGCGGGTAGCGTTGAGATCGAGCTCCACT
ACATCCCGGAAGGCGAGGCGGGGTCCCCGGCTCGCGGCGGACGGGTAGGT
AGGCCCGCTCTTGACGAGACTGATGTCAACGGTGGCGGCAACAACCCCTA
CACGCCCATGTCCCCGTCCGCGACGACGACGCCGACGACGTCCCTCGCCT
CTTCCTTCGTCAAGGCGGCCTTGTCCTTGCCGCACAAGCCGCGGGCCTCC
GGCGGTGCCGGCGACGGCGCGGCAGCGGTGCAGGCGGAGCTGCTGGCCCT
CTCTCCGCGGACGGTGACGAGGGGAACGGAGAAGAAAAATGGGATATCGG
CTACGAAGTCGCCGGCGTTGGCAAAATCCAGCTCTCTGCCGGGCACGGAG
AAAGCGGCAGCCTCGTCCTGTTCCTCCTCCGCAGGAACCCACAGGGGAGG
CGGCGGGAGCGGCTGCTACGGCTCCGCCGCGGCGGTGGCCCAGGAGGACC
TGCTGCCCCTGTCGCCGAGGATGGCGAGGGGGGCCGAGGCGGCGGCGGCG
GCTGCCGCGGCAGAGGCCGCCCGGGGGCGGGGTTGCAGCAAGGGCGACGG
CGCGGGAGGTTGGAGCTTGAAGTCGTTCTTCTTCGGGGTTGTGTTCTCGG
CGCTGCTCGTGTTGGGGGGGTTGTGGGCTGTCGGCGTTCCGCTGTTGTCC
GGACAGCTTGGGTTCGGCCTGAGGGTCCTGGAGGACGGCGAGAACGGTCG
GCAAGCGGTTGTTCTCATACACGGCTCGGTAAGCGGGGGG
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