mRNA_Ecto-sp13_S_contig69006.17885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69006.17885.1
Unique NamemRNA_Ecto-sp13_S_contig69006.17885.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69006.17885.1 vs. uniprot
Match: D7G424_ECTSI (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G424_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.590e-24
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:   67 QVRPPILFIAAEHDQLCPVGTVREAAAQAINAKLSIHNKTHFDIYLGETLQVTVR 231
            +VRPPILFIAAEHDQLCPVGTVREAAAQAINAKLSIH+KTHFDIYLG+TLQ  ++
Sbjct:  295 KVRPPILFIAAEHDQLCPVGTVREAAAQAINAKLSIHDKTHFDIYLGDTLQAILK 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69006.17885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G424_ECTSI3.590e-2487.27AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69006contigEcto-sp13_S_contig69006:41..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.8
Seed ortholog evalue7.4e-20
Seed eggNOG ortholog2880.D7G424
Model size249
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs2RZEK@2759,COG1073@1
Cds size237
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463948.5674453-UTR-Ecto-sp13_S_contig69006:40..521681463948.5674453-UTR-Ecto-sp13_S_contig69006:40..52Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69006 41..52 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463948.5775714-CDS-Ecto-sp13_S_contig69006:52..2891681463948.5775714-CDS-Ecto-sp13_S_contig69006:52..289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69006 53..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69006.17885.1prot_Ecto-sp13_S_contig69006.17885.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69006 53..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69006.17885.1

>prot_Ecto-sp13_S_contig69006.17885.1 ID=prot_Ecto-sp13_S_contig69006.17885.1|Name=mRNA_Ecto-sp13_S_contig69006.17885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MLLLGPFAYAPVCNARETQVRPPILFIAAEHDQLCPVGTVREAAAQAINA
KLSIHNKTHFDIYLGETLQVTVRLRRLF*
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mRNA from alignment at Ecto-sp13_S_contig69006:41..289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69006.17885.1 ID=mRNA_Ecto-sp13_S_contig69006.17885.1|Name=mRNA_Ecto-sp13_S_contig69006.17885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69006:41..289+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCCTTCGGCCATGCTGCTGCTCGGACCGTTTGCATACGCGCCTGTCTG
CAATGCGCGTGAAACACAGGTTCGGCCGCCGATTCTCTTCATCGCGGCGG
AACACGACCAACTGTGCCCGGTGGGCACGGTCAGGGAAGCGGCGGCGCAG
GCGATCAACGCCAAGCTGTCCATCCACAATAAGACGCACTTCGACATCTA
CTTGGGGGAAACTCTGCAGGTGACAGTGAGATTACGGAGGCTTTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69006:41..289+

>mRNA_Ecto-sp13_S_contig69006.17885.1 ID=mRNA_Ecto-sp13_S_contig69006.17885.1|Name=mRNA_Ecto-sp13_S_contig69006.17885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69006:41..289+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGCTCGGACCGTTTGCATACGCGCCTGTCTGCAATGCGCGTGA
AACACAGGTTCGGCCGCCGATTCTCTTCATCGCGGCGGAACACGACCAAC
TGTGCCCGGTGGGCACGGTCAGGGAAGCGGCGGCGCAGGCGATCAACGCC
AAGCTGTCCATCCACAATAAGACGCACTTCGACATCTACTTGGGGGAAAC
TCTGCAGGTGACAGTGAGATTACGGAGGCTTTTTTGA
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