mRNA_Ecto-sp13_S_contig69.17875.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69.17875.1
Unique NamemRNA_Ecto-sp13_S_contig69.17875.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69.17875.1 vs. uniprot
Match: A0A6H5KQU0_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU0_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.050e-95
Identity = 162/175 (92.57%), Postives = 167/175 (95.43%), Query Frame = 1 
Query:    1 LWLEGNRFVARFQSDPTATDWGVRFTAYGILDCDGRDSSGCNDNGAVVDGLNVGDASCGPTNGAAQGVAAPAQTGIVTGTTTVAVPALVAKGRAGAREVELCCWVLDLLSREGHAVPEVASRLCDNSALEAFGACLKTFSQQRRLGIIRLITGIVARVGPAAGAEVTAARSSAVA 525
            LWLEGNRFVARFQSDPTATDWGVRFTAYGILDCDGRDSSGC+ +GAVVDGLNVGDASCGPTNGAAQGVAAPA TGIVTGTT VAVPALVAKGRAG REVELCCWVLDLLSR+GHAVP+VASRLCDNSALEAFGACLKTFSQQ RL I+RLITGIVARVGPAAGAEVT ARS AVA
Sbjct: 1609 LWLEGNRFVARFQSDPTATDWGVRFTAYGILDCDGRDSSGCDGSGAVVDGLNVGDASCGPTNGAAQGVAAPASTGIVTGTTAVAVPALVAKGRAGTREVELCCWVLDLLSRKGHAVPKVASRLCDNSALEAFGACLKTFSQQWRLSILRLITGIVARVGPAAGAEVTVARSPAVA 1783
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BLAST of mRNA_Ecto-sp13_S_contig69.17875.1 vs. uniprot
Match: D7FKJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKJ2_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 4.320e-94
Identity = 159/175 (90.86%), Postives = 163/175 (93.14%), Query Frame = 1 
Query:    1 LWLEGNRFVARFQSDPTATDWGVRFTAYGILDCDGRDSSGCNDNGAVVDGLNVGDASCGPTNGAAQGVAAPAQTGIVTGTTTVAVPALVAKGRAGAREVELCCWVLDLLSREGHAVPEVASRLCDNSALEAFGACLKTFSQQRRLGIIRLITGIVARVGPAAGAEVTAARSSAVA 525
            LWLEGNRFVARFQSDPTATDWGVRFTAYGILDCDGRDSSGCN NG VVDGLNV DASCGPTNGAAQGVA PA TG+VTGTTTVAVP LVAKGRAGAREVELCCWVLD LSREGHA+PEVASRLCDNSALEAF ACLKTFSQ+RRL I+R ITGIVARVGP AGAEVTAA SSAVA
Sbjct: 1065 LWLEGNRFVARFQSDPTATDWGVRFTAYGILDCDGRDSSGCNGNGTVVDGLNVDDASCGPTNGAAQGVATPAPTGVVTGTTTVAVPTLVAKGRAGAREVELCCWVLDSLSREGHAMPEVASRLCDNSALEAFEACLKTFSQERRLSILRFITGIVARVGPTAGAEVTAAGSSAVA 1239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69.17875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQU0_9PHAE1.050e-9592.57HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FKJ2_ECTSI4.320e-9490.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69contigEcto-sp13_S_contig69:13217..13742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score312.8
Seed ortholog evalue1e-82
Seed eggNOG ortholog2880.D7FKJ2
Model size528
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.RNA localization to chromatin
EggNOG OGsCOG5184@1,KOG1426@2759,KOG2242@1,KOG2242@2759
EC2.3.2.26
Cds size525
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463947.6802227-CDS-Ecto-sp13_S_contig69:13216..137411681463947.6802227-CDS-Ecto-sp13_S_contig69:13216..13741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 13217..13741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69.17875.1prot_Ecto-sp13_S_contig69.17875.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69 13217..13741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69.17875.1

>prot_Ecto-sp13_S_contig69.17875.1 ID=prot_Ecto-sp13_S_contig69.17875.1|Name=mRNA_Ecto-sp13_S_contig69.17875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
LWLEGNRFVARFQSDPTATDWGVRFTAYGILDCDGRDSSGCNDNGAVVDG
LNVGDASCGPTNGAAQGVAAPAQTGIVTGTTTVAVPALVAKGRAGAREVE
LCCWVLDLLSREGHAVPEVASRLCDNSALEAFGACLKTFSQQRRLGIIRL
ITGIVARVGPAAGAEVTAARSSAVA
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mRNA from alignment at Ecto-sp13_S_contig69:13217..13742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69.17875.1 ID=mRNA_Ecto-sp13_S_contig69.17875.1|Name=mRNA_Ecto-sp13_S_contig69.17875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=526bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69:13217..13742+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTGGCTTGAAGGGAACCGCTTCGTCGCTCGTTTCCAAAGCGACCCCAC
CGCCACTGACTGGGGAGTCCGCTTTACTGCCTACGGGATACTCGACTGCG
ACGGCAGGGACAGCAGTGGTTGTAACGACAATGGTGCGGTAGTGGATGGG
TTGAACGTTGGCGATGCTTCGTGTGGCCCCACAAACGGAGCGGCGCAGGG
TGTGGCCGCACCGGCACAAACGGGCATTGTGACCGGTACTACTACTGTGG
CCGTTCCCGCCTTAGTGGCGAAAGGACGAGCAGGGGCCCGTGAGGTCGAG
TTATGCTGCTGGGTTCTGGACTTGCTAAGTCGCGAGGGACATGCGGTGCC
CGAGGTGGCATCGCGCCTGTGCGACAACAGCGCGTTGGAGGCGTTCGGGG
CATGCCTGAAGACCTTTTCTCAGCAGCGGCGACTAGGCATCATACGGCTC
ATCACCGGCATCGTTGCGAGAGTTGGACCAGCGGCGGGAGCGGAGGTGAC
GGCAGCGCGCTCCTCGGCCGTGGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69:13217..13742+

>mRNA_Ecto-sp13_S_contig69.17875.1 ID=mRNA_Ecto-sp13_S_contig69.17875.1|Name=mRNA_Ecto-sp13_S_contig69.17875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69:13217..13742+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTGGCTTGAAGGGAACCGCTTCGTCGCTCGTTTCCAAAGCGACCCCAC
CGCCACTGACTGGGGAGTCCGCTTTACTGCCTACGGGATACTCGACTGCG
ACGGCAGGGACAGCAGTGGTTGTAACGACAATGGTGCGGTAGTGGATGGG
TTGAACGTTGGCGATGCTTCGTGTGGCCCCACAAACGGAGCGGCGCAGGG
TGTGGCCGCACCGGCACAAACGGGCATTGTGACCGGTACTACTACTGTGG
CCGTTCCCGCCTTAGTGGCGAAAGGACGAGCAGGGGCCCGTGAGGTCGAG
TTATGCTGCTGGGTTCTGGACTTGCTAAGTCGCGAGGGACATGCGGTGCC
CGAGGTGGCATCGCGCCTGTGCGACAACAGCGCGTTGGAGGCGTTCGGGG
CATGCCTGAAGACCTTTTCTCAGCAGCGGCGACTAGGCATCATACGGCTC
ATCACCGGCATCGTTGCGAGAGTTGGACCAGCGGCGGGAGCGGAGGTGAC
GGCAGCGCGCTCCTCGGCCGTGGCT
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