mRNA_Ecto-sp13_S_contig6881.17855.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6881.17855.1
Unique NamemRNA_Ecto-sp13_S_contig6881.17855.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 8.740e-33
Identity = 78/126 (61.90%), Postives = 88/126 (69.84%), Query Frame = 2 
Query:   59 ALAHLKERIHTTRAVP*RERTTGSSCSPR-----TTALVQ--NCNDKAP*-SMAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQGEIPASLGQLAKLEQL 412
            A A + +R   +R +P  ER  G   + R      TALVQ  NC +KAP   MAQTDRKALVALYNAT G KWKN +NWNTSAALS+WY VEVNSQGRVVKLSL  NNLQG IP  +G+LA LE L
Sbjct:   73 ASAPVAKRRLPSRRLPLAERGRGDQGNGRFQLFPATALVQSANCKEKAPFYKMAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQGPIPVEVGRLAVLEYL 198
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: A0A6H5KDU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.030e-31
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 2 
Query:  140 PRTTALVQNCNDKAP*-SMAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQG 367
            P TTALVQNC +KAP  +MAQ DRKALVALYNAT GAKW+N RNWNT AALS+WYGVEV+SQGRVV L L GNNLQG
Sbjct:  122 PATTALVQNCKEKAPHYTMAQPDRKALVALYNATGGAKWRNKRNWNTRAALSQWYGVEVDSQGRVVTLHLGGNNLQG 198
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.480e-29
Identity = 63/92 (68.48%), Postives = 71/92 (77.17%), Query Frame = 2 
Query:  143 RTTALVQNCNDKAP*-SMAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQGEIPASLGQLAKLEQLY 415
            R  A +Q     AP  +MAQ DR+ALVALYNAT GAKW+N RNWNT AALS+WYGVEV+SQGRVV LSLAGNNLQG IP  LGQL  L+ L+
Sbjct:   79 RACAKLQRKGGSAPYYTMAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTIPPELGQLTALQFLH 170
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.120e-27
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 2 
Query:  188 SMAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQGEIPASLGQLAKLE 406
            +MAQTDRKALVALYNAT GA+WKN +NW TSAALS+W+GVEVN+QGRVVKLSL  NNL+G IP  LG L++LE
Sbjct:   70 TMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSRLE 142
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 6.340e-27
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 2 
Query:  176 KAP*SMAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQGEIPASLGQLAKLEQLY 415
            + P +MAQTDR+ALVALY A  GAKW+N RNWNTSAALS+W+GVEVNSQGRVV L L  NNLQG IP  LG L  L+ L+
Sbjct:   20 RPPYTMAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQGRIPTELGNLHMLDTLW 99
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.210e-25
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 2 
Query:  191 MAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQGEIPASLGQLAKLEQ 409
            MAQTDR ALVALY AT G  W+ ++NW+T A L  W+GV+VN QGRVVKL L  NNL+GEIPA+LGQLA L+Q
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQQ 73
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: A0A6H5KND6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.840e-24
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 2 
Query:  188 SMAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNL 361
            +MAQTDRKALVALYNAT  AKW+  RNWNTSAALS+W+GVEVN QGRVVKLSL GNNL
Sbjct:   52 TMAQTDRKALVALYNATGRAKWEYTRNWNTSAALSQWHGVEVNCQGRVVKLSLGGNNL 109
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.920e-22
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  188 SMAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQGEIPASLGQLAKLEQLY 415
            +M QTDR ALVALY+A  G  WKN  NWN  A LS+W+G+ +N QGRVV++ LA NNLQG IP +LG L+KLE+L+
Sbjct:   50 TMPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQGSIPEALGALSKLERLW 125
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.850e-21
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 2 
Query:  191 MAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQGEIPASLGQLAKLEQLY 415
            MAQTDR ALV LY AT G  W+  +NW+T A L  W+GV+VN QGRVVKL L  NNL+GEIPA+LG+L  L+QL+
Sbjct:    1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLH 75
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BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.410e-21
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:  191 MAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKLSLAGNNLQGEIPASLGQLAKLEQL 412
            MA TDR AL+AL+ AT GA+W+ + NW TS  L  WYGV+VN++GRVVKLSL  NNLQG +P  LG L  L+ L
Sbjct:    1 MASTDRNALIALFQATRGAEWRKSDNWGTSEGLGTWYGVDVNAEGRVVKLSLYNNNLQGSLPPQLGNLGALQHL 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6881.17855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G496_ECTSI8.740e-3361.90Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KDU0_9PHAE2.030e-3179.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVC7_9PHAE1.480e-2968.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK2_ECTSI3.120e-2775.34Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LFJ9_ECTSI6.340e-2768.75Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JK91_9PHAE6.210e-2567.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KND6_9PHAE9.840e-2482.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL09_ECTSI8.920e-2260.53Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LBY3_ECTSI1.850e-2162.67Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FUH5_ECTSI4.410e-2159.46Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6881contigEcto-sp13_S_contig6881:3327..5718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score118.6
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog2880.D7G496
Model size632
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2E19U@1,2S8MQ@2759
Cds size441
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6881.17855.1prot_Ecto-sp13_S_contig6881.17855.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6881 3327..5260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463945.5299916-CDS-Ecto-sp13_S_contig6881:3326..33761681463945.5299916-CDS-Ecto-sp13_S_contig6881:3326..3376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6881 3327..3376 -
1681463945.5406666-CDS-Ecto-sp13_S_contig6881:3523..35951681463945.5406666-CDS-Ecto-sp13_S_contig6881:3523..3595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6881 3524..3595 -
1681463945.554455-CDS-Ecto-sp13_S_contig6881:3907..39791681463945.554455-CDS-Ecto-sp13_S_contig6881:3907..3979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6881 3908..3979 -
1681463945.5693898-CDS-Ecto-sp13_S_contig6881:4135..42071681463945.5693898-CDS-Ecto-sp13_S_contig6881:4135..4207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6881 4136..4207 -
1681463945.5843854-CDS-Ecto-sp13_S_contig6881:5085..52601681463945.5843854-CDS-Ecto-sp13_S_contig6881:5085..5260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6881 5086..5260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463945.601931-UTR-Ecto-sp13_S_contig6881:5260..52721681463945.601931-UTR-Ecto-sp13_S_contig6881:5260..5272Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6881 5261..5272 -
1681463945.6150062-UTR-Ecto-sp13_S_contig6881:5540..57181681463945.6150062-UTR-Ecto-sp13_S_contig6881:5540..5718Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6881 5541..5718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6881.17855.1

>prot_Ecto-sp13_S_contig6881.17855.1 ID=prot_Ecto-sp13_S_contig6881.17855.1|Name=mRNA_Ecto-sp13_S_contig6881.17855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MAQTDRKALVALYNATVGAKWKNARNWNTSAALSRWYGVEVNSQGRVVKL
SLAGNNLQGEIPASLGQLAKLEQLYLYQNKLSGPIPKELRALTKLTSLIL
SSNNLTGPIPLELGRLAVLEYLDLGGNDLTGSIPPELGKLAALRWLD
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mRNA from alignment at Ecto-sp13_S_contig6881:3327..5718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6881.17855.1 ID=mRNA_Ecto-sp13_S_contig6881.17855.1|Name=mRNA_Ecto-sp13_S_contig6881.17855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2392bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6881:3327..5718- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGATTCTGTTCAGCAGTCCCATCTGGTTAGAGTTCAGCAAGGATTACA
TTCACCGTGCTCTGGCCCACCTTAAAGAGAGGATCCACACGACGAGAGCG
GTGCCGTAAAGAGAGAGAACGACAGGGTCCAGCTGTTCCCCGCGTACTAC
CGCGCTTGTGCAAAACTGCAACGACAAGGTGGGTCTGTTCTGTTCCTCTC
TGCTCTCTTTCATGGACTAGGTTGTTGATCCCGCCGCAAAGTGTGGCATC
GTTCATCGTTCGCACATCGCCGAGATTGTTCGCGCTCGAAGATGTTGTTG
TGGTTCTTCGATGCGATCACCTCTTGTGATACTGGTGTGATTCACCACTT
CAGTCGCGAGAGACGACCAACAGACATCGATGGTACGTGTGCTCTTTGAA
CAGATGTTTGTCTTCGCGAACGTCCCGCAAACTTCCGCGTACCCAGGCCC
CCTAGTCGATGGCGCAGACGGACCGCAAAGCGCTGGTTGCCCTATACAAC
GCGACCGTTGGGGCGAAGTGGAAGAACGCGCGAAACTGGAACACTAGTGC
CGCCCTCTCGCGATGGTACGGAGTCGAAGTCAACTCCCAGGGCCGCGTGG
TGAAGTTATCTCTGGCGGGCAACAACCTCCAAGGTGTTATTCCTCCATTT
CTTTCTTGCGATCTCGTTGACCTTCCCCGAGAACCCTTTGACCGACAGTG
GCCCTTTCATGAATTTGCAAGTCTTGCAACATGCCACAACGTTGTCTCTT
TCGTACGTTCCCGTGTTCTGCACACGGTCTACGCCTGAGTACCGCTCGTA
TATGAATTCCCCGCAGTACCAGCAGGCTGTGCGTACAATGCTACTTACTG
TATTTGTCCAAGCTAATCGACACTGCAATGTTTCGCCTCCTAGCTTGCTC
CTTGACCACGCGCCACCTGTACAGCACATCACCTTTCCTGGCTTTCAAGT
GCCTTTGATACGCTGGGGACCTTCGGTATCTCTTCTTTTGCAGGGCTCTG
ATGCGGCGCACGTTGTACCCTGGAGCATTTTCCACGATGAAACCGTTTCG
CACGGGCCCCGTAAGCTTGGTGGTTGGTTTCCGTGCTGACATCCATCCGT
TTTTGTTTGTCGCAGCCATGCCTGGTAAAATGTGGCAAATACCGCGTGAT
GTCAAAAATACAAAATACGGGAAGGGTGTATTCAAGACATCGGCAGGGTC
GGCGGGGAATAATCAAAAAATGACCCGACCGGCTTGTGGAGTATGTACTA
GCCTCCGCGACACGGAGCTCTGGTCACCTGCAAGGTTGAGGATCTGCAGC
GCTGCAAGATTTTCCAGCTCCAGTGGGGATGGGGCCTGTAGTCCAAAGGT
TCGACAATGTCGTTTCCGAAAGCGATCACCCTTTTCCGTCGAAACGAGCA
TGACCCCCGCCCAAGTGCTACGCGAGATCGATACTCTAGAAAACTACGTA
TTAGTTCAACGATACTACCTACGAACCAAACGACCTGTCCCATCCCCCAA
ATACGATGCAGGTGAAATCCCGGCGTCGCTCGGACAGCTCGCCAAGCTGG
AACAGCTCTACCTCTACCAAAACAAACTCAGCGGTAAGTGTCTCTGACAT
CTGCGGCGTGTACACGTCGTACACGTCATGACTGGGTTGCTTGAATCCCG
CCAATGCATTGGCAGGACCACTGTTCTAGAAGCTTCATCACGCTATATTC
TGGTTTGTTTCCCCGCTGTGCTGCTTTTATTTTGTCCAGGGCCAATACCC
AAGGAGCTGCGAGCTCTGACCAAGCTGACATCCCTGATCCTTAGCAGCAA
CAACCTCACTGGTGAGAAACGTGCCAAAAGGAATATTTGCGTTGTTCTGT
AGCACACATGATACAATTTCATGATATTTTTTGGTCTTCACCTATGTGTC
CTGCCAACGCTAGTGGGTGAGCACGAAATTTCGCAATTTCGGAACTCGCG
GGACATCTGTTGCGTATGCGAGTACGAAATTTCACAATTGCGGAAATCAC
GGGACATCTTTTGCTACGAGCTGCGTTGGTGAATAGGTGTTTGTAGAAGC
CGGGACATTTAGCTTTGATTCTTCCCGCTACATTGTGGGTACTGTGTTTT
CGGTTTTCCTCTTTCGATTGCAGGTCCCATCCCCTTGGAGCTTGGACGGC
TCGCCGTACTGGAGTACCTCGACCTTGGGGGGAACGACCTAACTGGTAAG
TAATTTCGTTCAAGTTTCCAAGATGAATCCCGCCGATGTGCTGGCAGGAC
AGGATCTACGGAGATCGATGATTCAGATAGAAGACAGCCGGGTTAAATAA
GAAAATACTCGCGCTCACTTCGTATGCTCTTTGTGCTTGCAGGATCCATC
CCGCCGGAGCTGGGGAAGCTAGCAGCACTGCGGTGGCTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6881:3327..5718-

>mRNA_Ecto-sp13_S_contig6881.17855.1 ID=mRNA_Ecto-sp13_S_contig6881.17855.1|Name=mRNA_Ecto-sp13_S_contig6881.17855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6881:3327..5718- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCAGACGGACCGCAAAGCGCTGGTTGCCCTATACAACGCGACCGT
TGGGGCGAAGTGGAAGAACGCGCGAAACTGGAACACTAGTGCCGCCCTCT
CGCGATGGTACGGAGTCGAAGTCAACTCCCAGGGCCGCGTGGTGAAGTTA
TCTCTGGCGGGCAACAACCTCCAAGGTGAAATCCCGGCGTCGCTCGGACA
GCTCGCCAAGCTGGAACAGCTCTACCTCTACCAAAACAAACTCAGCGGGC
CAATACCCAAGGAGCTGCGAGCTCTGACCAAGCTGACATCCCTGATCCTT
AGCAGCAACAACCTCACTGGTCCCATCCCCTTGGAGCTTGGACGGCTCGC
CGTACTGGAGTACCTCGACCTTGGGGGGAACGACCTAACTGGATCCATCC
CGCCGGAGCTGGGGAAGCTAGCAGCACTGCGGTGGCTCGAC
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