mRNA_Ecto-sp13_S_contig6868.17831.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6868.17831.1
Unique NamemRNA_Ecto-sp13_S_contig6868.17831.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: D7G2R5_ECTSI (DUF2040 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R5_ECTSI)

HSP 1 Score: 619 bits (1596), Expect = 3.650e-217
Identity = 389/430 (90.47%), Postives = 394/430 (91.63%), Query Frame = 3
Query:   93 MRKSGVKFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRPPGATSVFDANSDDEEEESKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDEYEMQDGNEQAAATAKRKEAAXXXXXVASEGGPTNGASQGGREXXXXXXXGEADSSSGRTDESGGPTARMVDPRAGEQKKSRRDEAGVRDSER--RRRDDSGEAVDNVTKRARLAGEAAGGG--------GVEQRQDERTDEDKSAAEAADXXXXXXXXXXXXXXXXXXARERFLARKKAA 1352
            MRKSGVKFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRP G+TSVFDANSDDEEE+SKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDEYEMQDGNEQA          XXXXX   EGGP NGASQGGRE       G+ADSS GRTDESGGPTARMVDPRAGEQKKSRRDEAGVRDSER  RRR DSGEAVDNV KRARLAGEA+ GG        GVEQRQDERTDE+KSAAEAADXXXXXXXXXXXXXXXXXXARERFLARKKAA
Sbjct:    1 MRKSGVKFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRPAGSTSVFDANSDDEEEDSKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDEYEMQDGNEQAXXXXXXXXXXXXXXXX-XEGGPANGASQGGREGRDG---GDADSSPGRTDESGGPTARMVDPRAGEQKKSRRDEAGVRDSERSGRRRGDSGEAVDNVAKRARLAGEASDGGDASVGDDGGVEQRQDERTDEEKSAAEAADXXXXXXXXXXXXXXXXXXARERFLARKKAA 426          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: A0A835YZI8_9STRA (Coiled-coil domain-containing protein 55-domain containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI8_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.610e-51
Identity = 129/253 (50.99%), Postives = 164/253 (64.82%), Query Frame = 3
Query:  111 KFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRPPGATSVFDANSDDEEEESKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAR--EKEKR-QPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKT---GMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDEYEM 851
            ++GL+G A +LK  S +A  A         + AP R P  A + F  +SD +      D +   AVN+RLAA  A++ ++ +K    A+  DPSVFDYD VYD + + R+ K AAA  AR  +K KR QP+YIGNLL+QAK+R VE DR++DRKL KERE  DK  G A MKFVTSAYK KLMEQKKWE+ Q+ E ERE + +       GM  FYSNL+TKNIAMGGDV   A SAFTAGS+RHAA   +++
Sbjct:    3 RYGLLGNAKTLKAQSVAAKTAKAP------RKAPARGP--AVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDVAN-ATSAFTAGSRRHAAAAAFKV 246          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: A0A7S1XVS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVS8_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.570e-35
Identity = 87/153 (56.86%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  372 ALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEG--EATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKR 824
            AL  D SVFDYD VYD M  +R+S  AAA  A E+++R+ KY  NLLKQA+MR ++SDRI++RKL++E     ++ G  +   KFV +AY+K+L E++ WE  ++ E ERE RNDVTKTGM GFYSNL+TKNIAMGGDV K+A S+FT GSK+
Sbjct:    4 ALTEDASVFDYDGVYDSMTSARDS--AAAAQASERKERKSKYTENLLKQAQMRKLQSDRIYERKLRREAAEVAEMHGGVKDEDKFVGAAYRKQLEEREAWEKAEREEAEREARNDVTKTGMMGFYSNLLTKNIAMGGDV-KNAQSSFTVGSKQ 153          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: A0A7S3HBP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBP6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.020e-33
Identity = 88/196 (44.90%), Postives = 124/196 (63.27%), Query Frame = 3
Query:  237 SVFDANSDDEEEESKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKR 824
            S+FD   DD +E+S    + V+ VN +LA  +A  E+        A  A+P ++DYD  YD  K   ++K   +     K+  + +Y+ NLL  +KMR  E +R+F++ L KER+ +D   G+   KFVT+AYKKKL+E KKWE + +L DE EQR DV K+GM GFY+NL+TKN+AMGGDV+  A S +TAGS R
Sbjct:   31 SMFDR--DDSDEDSSAVSNDVSRVNAQLARRNAILEQTMSA----AASAEPDIYDYDGAYDSFKAKEQAKHQLSQPIATKDAPKARYVNNLLATSKMREKEKERVFEKNLLKERKVEDAEFGDKD-KFVTAAYKKKLLEDKKWEYEDRLADEVEQRTDVRKSGMEGFYANLLTKNVAMGGDVDAHAVSVYTAGSAR 219          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: W7TFP5_9STRA (DUF2040 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFP5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.990e-32
Identity = 101/264 (38.26%), Postives = 145/264 (54.92%), Query Frame = 3
Query:  180 RGRPIGSKPAPRRRPPGATSVFDANSDDEEEESKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTK---------TGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDEYEMQDGNEQAAATAKRKEAAXXXXXVASEGGPTN 944
            RGRP  +  APRR    A S+ D +SDD  +E  G L+   + NK L A S K +K  ++    A  +DPS++DYD VYD +   RE +   A  A ++EK+  +YI NL + A+++  E DR ++R+L KER+ +D L  +  + FVTSAYKKKLME +KWE   +LE+                   +GM  F+SNL+TKNIAMG DV+ +A SA+T GSK+  +     +      AA T   K+       V   GG ++
Sbjct:   25 RGRPRPASAAPRRPAGSAFSLDDDDSDDNGQEEDG-LASKASFNKMLQAQSIKAQKSLEEAEAAARASDPSIYDYDAVYDEIHAKREERDNMAAEAAKEEKKTSRYITNLKRAAELKKQEQDRFYERRLAKERKEEDALYKDKDV-FVTSAYKKKLMETQKWETIDRLEEXXXXXXXXXXXXKGAPGGGSGMDAFFSNLLTKNIAMGADVKVAARSAYTVGSKQQESAFGTSLPSATSTAAETVDNKDVLDPSSRVVDHGGASH 286          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: A0A8K1FKC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKC2_PYTOL)

HSP 1 Score: 132 bits (333), Expect = 9.920e-31
Identity = 79/154 (51.30%), Postives = 105/154 (68.18%), Query Frame = 3
Query:  363 YEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MGGFYSNLITKNIAMGGDVEKSANSAFTAG 815
            +E AL  DPSVFDYD VYD ++ SR+ KV+     RE EK Q KYIG L+++AK+R +E DR+ +R+L KEREA D   G+   K ++++YK+KL E K+W+ +    D +E   DVTK G   M GFYSNL+TKNIAMGGD   S +SA+T G
Sbjct:   82 HEKALAEDPSVFDYDGVYDEIQSSRQDKVSRRKAQRETEKAQSKYIGTLMEKAKVREIELDRVRERRLLKEREADDAQYGDKE-KLISASYKRKLQEMKRWDEEDARLDAKEAAEDVTKRGNEAMVGFYSNLLTKNIAMGGDTSNS-HSAYTVG 233          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: A0A7S4E5L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5L4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.100e-30
Identity = 81/181 (44.75%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  306 VNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQP--KYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDE 842
            V +++  + A Q K+A  +   A   DPS++DYD VYD MKE    K++A +        +P  +YIG+L + AK+R  E DR+++R+L KE+E QDK     T +FVT+AYKK+L E +KW+ + +  DE E+R     +GM GFYSNL+T+NIA G DVEK+A S++T GS+R+A  DE
Sbjct:   52 VAQQMRDLGAAQRKRAXXQAAQAAAVDPSIYDYDGVYDQMKEDERKKISARSGLSNTNHSKPGARYIGSLKQAAKVREREFDRVYERQLLKEQE-QDKDTYGDTERFVTAAYKKQLQESRKWDAEDRRMDEVEERTSAQTSGMAGFYSNLLTRNIAAGADVEKAAVSSYTHGSRRNAFVDE 231          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: A0A662Y6L8_9STRA (DUF2040 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6L8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.500e-30
Identity = 88/183 (48.09%), Postives = 116/183 (63.39%), Query Frame = 3
Query:  279 KGDLSGVTAVNKRLAAISAK--QEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MGGFYSNLITKNIAMGGDVEKSANSAFTA 812
            K D     A  +R+   +A+  Q+ Q ++    AL  DPSVFDYD VYD MK +R+S+V    V RE EK+QPKYIG LL QAK+R VE++RI +R+L  ER+A D L G+   K V+++YK+KL E K+W+ +       E R+DVTK G   M GFY+NL  KNIAMGG     A SA+TA
Sbjct:   30 KADEDAKAADRRRVGLEAARSLQQSQVERTRAQALADDPSVFDYDAVYDDMKSARQSEVTKRAVQREAEKKQPKYIGTLLAQAKIREVENERIRERRLLHERKADDALYGDKE-KLVSASYKRKLQEMKRWDEEDARLANLEDRDDVTKQGEHAMAGFYANL-NKNIAMGGSTAN-ARSAYTA 209          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: A0A2D4BZE0_PYTIN (DUF2040 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZE0_PYTIN)

HSP 1 Score: 129 bits (325), Expect = 1.000e-29
Identity = 78/160 (48.75%), Postives = 108/160 (67.50%), Query Frame = 3
Query:  372 ALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDE 842
            AL+ DPSVFDYD VYD ++ SR+ K++     RE EK+Q KYI +L+++AK+R +E +RI +R+L KER  +D L G+   K ++++YK+KLME K+W+ +    D  E   DVTK G   M GFYSNL+TKNIAMG D   S+ SA+T G K+   T E
Sbjct:   50 ALEEDPSVFDYDGVYDEIQSSRQDKLSKRKAEREAEKKQSKYITSLVEKAKIREIEHERIRERRLLKERATEDALYGDKE-KLISASYKRKLMEMKRWDEEDARLDAVEAAEDVTKRGTEAMAGFYSNLLTKNIAMGSDAS-SSRSAYTVGGKKETDTRE 207          
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Match: A0A1V9ZKX0_9STRA (DUF2040 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKX0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.830e-29
Identity = 82/158 (51.90%), Postives = 106/158 (67.09%), Query Frame = 3
Query:  351 AKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MGGFYSNLITKNIAMGGDVEKSANSAFTAG 815
            A++  ++AL +DP+VFDYD VYD M+  R  + AA  V       Q KYI  LL++AK+R +E DRI +R+L KERE  DKL G+ T KF+TS+YK+KLME K+WE +     E E   DVTK G   M GFY+NL+T NIAMGG +EK A SA+T G
Sbjct:   60 AERAVQEALASDPNVFDYDGVYDSMQAERVKQKAAKKVEGVP---QSKYINVLLEKAKIREIEHDRIRERRLLKEREEDDKLHGD-TEKFITSSYKRKLMEAKRWEEEDARLAEIEAAQDVTKRGELGMAGFYANLLTNNIAMGGTIEK-ATSAYTTG 212          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6868.17831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R5_ECTSI3.650e-21790.47DUF2040 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YZI8_9STRA2.610e-5150.99Coiled-coil domain-containing protein 55-domain co... [more]
A0A7S1XVS8_9STRA3.570e-3556.86Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3HBP6_9STRA1.020e-3344.90Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TFP5_9STRA3.990e-3238.26DUF2040 domain-containing protein n=2 Tax=Monodops... [more]
A0A8K1FKC2_PYTOL9.920e-3151.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4E5L4_9STRA1.100e-3044.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662Y6L8_9STRA4.500e-3048.09DUF2040 domain-containing protein n=2 Tax=Nothophy... [more]
A0A2D4BZE0_PYTIN1.000e-2948.75DUF2040 domain-containing protein n=1 Tax=Pythium ... [more]
A0A1V9ZKX0_9STRA2.830e-2951.90DUF2040 domain-containing protein n=1 Tax=Achlya h... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6868contigEcto-sp13_S_contig6868:2703..6095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score625.5
Seed ortholog evalue1.7e-176
Seed eggNOG ortholog2880.D7G2R5
Preferred nameNSRP1
Model size1831
KEGG koko:K07752,ko:K11414,ko:K13206,ko:K14437,ko:K20526
Hectar predicted targeting categorymitochondrion
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0040039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0048856,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Exons4
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2117@1,KOG2117@2759
Ec32 ortholog descriptionDomain of unknown function DUF2040
Ec32 orthologEc-11_003220.1
EC3.4.17.22,3.6.4.12
Cds size1263
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko03041,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6868.17831.1prot_Ecto-sp13_S_contig6868.17831.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6868 2795..5619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.0618238-UTR-Ecto-sp13_S_contig6868:2702..27941681463943.0618238-UTR-Ecto-sp13_S_contig6868:2702..2794Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6868 2703..2794 +
1681463943.1192393-UTR-Ecto-sp13_S_contig6868:5619..60951681463943.1192393-UTR-Ecto-sp13_S_contig6868:5619..6095Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6868 5620..6095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.0765276-CDS-Ecto-sp13_S_contig6868:2794..31351681463943.0765276-CDS-Ecto-sp13_S_contig6868:2794..3135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6868 2795..3135 +
1681463943.0892851-CDS-Ecto-sp13_S_contig6868:3642..38021681463943.0892851-CDS-Ecto-sp13_S_contig6868:3642..3802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6868 3643..3802 +
1681463943.1009457-CDS-Ecto-sp13_S_contig6868:4388..45281681463943.1009457-CDS-Ecto-sp13_S_contig6868:4388..4528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6868 4389..4528 +
1681463943.1099591-CDS-Ecto-sp13_S_contig6868:4997..56191681463943.1099591-CDS-Ecto-sp13_S_contig6868:4997..5619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6868 4998..5619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6868.17831.1

>prot_Ecto-sp13_S_contig6868.17831.1 ID=prot_Ecto-sp13_S_contig6868.17831.1|Name=mRNA_Ecto-sp13_S_contig6868.17831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=421bp
MRKSGVKFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRPPGATSV
FDANSDDEEEESKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPS
VFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVES
DRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDE
REQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAGSKRHAATDE
YEMQDGNEQAAATAKRKEAATAAAAVASEGGPTNGASQGGREGREGRDGG
EADSSSGRTDESGGPTARMVDPRAGEQKKSRRDEAGVRDSERRRRDDSGE
AVDNVTKRARLAGEAAGGGGVEQRQDERTDEDKSAAEAADKAREAAAAKA
KKEAAVRAARERFLARKKAA*
back to top

mRNA from alignment at Ecto-sp13_S_contig6868:2703..6095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6868.17831.1 ID=mRNA_Ecto-sp13_S_contig6868.17831.1|Name=mRNA_Ecto-sp13_S_contig6868.17831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6868:2703..6095+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACTTCTTTGCTGATAGCACGCGCAACCAAGAGGAAGACATTGGCGACA CGTGCAGGGAGATAATATACGCTGCGTACCCTCGGTCTCAACATGCGGAA GTCGGGGGTGAAATTCGGCCTCATTGGGACGGCTTCCTCCCTGAAGAAGG GCTCATCATCAGCAGCAGGAGCAGCAGGCAGGGGGCGCCCGATAGGGTCC AAGCCGGCACCGCGACGACGCCCGCCAGGCGCGACGTCGGTCTTCGACGC CAACTCGGACGACGAGGAGGAGGAATCTAAGGGAGACCTCAGCGGGGTGA CGGCGGTGAACAAGAGGCTGGCGGCGATCTCGGCCAAGCAGGAGAAGCAG GCGAAGAAGGAGTACGAGGACGCCCTGCAGGCCGACCCGTCCGTGTTCGA CTACGACCGCGTGTACGATGGCATGAAGGAGAGGTGTGAGCAAATGTCGT CGCTGGCAACATTATTTAGCGCTTCTTCTCTGCTCTTGGCAACATTACCA CTTGTTCTCTGTTCTTGTCCCTGTATTTACTCCTTGAGTGATGATCTTAC TACGTATGTTGGGGGCACTTTTGTGTTGGAACACTTCGCGGCTCTGTAAA TATCGCACCGCAGCCGAACCCGTAGTTTGGTGCATCTCGACGGCGTGCGA CGAGAGTTGAACGCGCTAGTCAGTCGCCAGCAACATTACCACTTCTTATG GTCTTGGCCCTGTGTGTATTACTTGGGCCATCGTCCTTTTAACCCCCGAG TATGTTCGTGTTTGCGTGTTGAACGCGCTACAATACGGTGCTGCTATGGC TTCACCTGCTGCTCGCATTGCACCGCAACCGTAACCAAACCGGAAAGATT TTTGCAGCTGTGGTGTTGGTGTCGCTCTCCCAATCCACCGCGAAGCACCC AAAGTCACCGTCCTACCCGTGTCCACCCTTTTTCCGCCAGTCGCGAGTCT AAGGTTGCGGCAGCGACGGTGGCGCGCGAGAAGGAAAAGAGGCAGCCCAA GTACATCGGCAACCTCCTCAAGCAGGCCAAGATGAGGGCGGTGGAGTCGG ACCGCATCTTCGACAGGAAGTTGCAGAAGGAGAGAGAGGCGCAAGACAAG GTAATAGAGGGGACGCACCACTTCTGCTGTTTGTTTCTATGAAGATACAC TTTTTCGAAGAGCCTGTTTTCCAGTGGTTGTATCACCTTGTTTTAGTTGT CTGATGCGCACATGATGACACAGAAGATTCCTTGTAGTCTGGGGCTTATG GATCAAAAACGGGGGGGGGGGGGGGGGGGGGGGGCCCCCCCATCGCTACC GAAAGAAGGGGGGGGGAGGTGTGGGGGGGGACCTTTTTTTCTTTTGACGC TGGCAAAACCCNNNNNNNNNNTTTTTTTTTTTCTGTTTTAGCTGTGATGT AGACAAATAAGTGGGATAATGTTGTGTGGGGGGGGGGGGAGGAGGAGAGG GGGGGGGGGGGGGGGGGGGGGGGGGGCGCGCGGACCCCGCTAATGCTGCA CGAAGATGTGGGTGGCAAGCTTGCGGGTGTACCATATTTACCTGCGACTG CAGCAACAGCCGTCCTCAGCGCAAAATCAACAAGTTGCGTTCCTGGCACG TCAATCCACCAAACTCGTGCTGACTAACATAGTCCGTGTGCGCCTCGTAC GCATTCCCATTATGACCATATACATAAATTTTGCAGTTAGAAGGCGAGGC GACGATGAAATTCGTCACGTCCGCGTACAAGAAGAAGCTCATGGAGCAGA AGAAGTGGGAGCTCCAGCAGCAGCTAGAGGACGAGAGGGAGCAGCGGAAT GACGTCACCAAGACGGGCATGGGCGGGTGCGTCAGTTGTTTGTTTTTTCT CAGCAGCGGTAGTATAAATAGTAAAGCACGGTCTCCTCCTCTCGTTACAT CTGGGGCCGATAGAAAGACAGGATGACTCTACTGCTGTAATTTGTTGTCT GTTCATTTTCAAACGGTAATGTTGGAATTGTTGGACGGATCGGGCGCGAC TTGGTTTGGACGCCTGGAATGATGACGGTGGGTCGTACGAGAGGTCGGCT GAAGGTCGCGTGGGGTGCCTTGTCCACAACCGGTCGCGAAGGCACACTCC TGGTGTGTTCATGTGATCAACGAACCCCGTCACCCATACCCATGTCACCG GTATGAAGCACAAGCACTCTTTCGTGCGGTCATGCACGAGGTTTTGCTTG CACACGGTCATCCAAAACACGCTCGAAGGATCCCCCCCCGCCCCCTGATC TCGCATTATGCTCGTCTTTTTGTTCCGTGGCGTACCATGGTACAGGTTTT ACTCGAACCTTATCACCAAGAACATCGCCATGGGCGGCGACGTCGAGAAG TCTGCCAATAGCGCCTTCACTGCGGGTTCCAAGCGGCACGCGGCCACCGA CGAATACGAAATGCAGGACGGGAACGAACAGGCGGCAGCAACAGCCAAAA GAAAAGAGGCCGCAACCGCCGCCGCAGCCGTCGCCAGCGAAGGGGGCCCC ACGAACGGCGCCAGCCAGGGGGGTAGGGAGGGTAGGGAAGGTAGGGATGG GGGCGAAGCAGACAGCAGTTCGGGGAGAACCGACGAGTCCGGCGGCCCCA CGGCTAGGATGGTCGACCCCCGCGCCGGAGAACAGAAGAAAAGCAGAAGA GACGAGGCGGGGGTGCGAGATTCTGAGCGCCGACGACGAGACGATTCGGG TGAGGCCGTGGACAACGTCACGAAGCGGGCTCGCCTGGCGGGAGAGGCGG CGGGTGGGGGCGGGGTAGAGCAGCGGCAGGATGAGAGAACAGACGAGGAT AAAAGCGCGGCGGAGGCGGCGGACAAGGCACGGGAGGCCGCGGCCGCGAA GGCGAAGAAGGAGGCGGCCGTCAGGGCGGCTCGGGAGCGATTCCTTGCGA GAAAGAAGGCCGCATGAAGTAACACGACAAAACAGCAGTGCGGCGATTGC TGTGCCTGGTAGCAGGAGCTGTGGGAGTGATTGTAAATACGCCTTTTGTG TCGCATAGGGTATCGTAGCGTGGCTGGAGACTTTTAGTGATCAAAATTCG TCCCCGTCTGCAGTGATTTTGTCGTGCTCCTGACGTTTGCTAAGCGTATG TTGGCTCGAATGAGTGCCAGTTCGGCGGAAACACGCGCGTCTCCCGGCAT TCAGGGAGCAAATTTAGGCCAACGTGTACCGTACTATGGTTCACCTCATC GCCAAGCCTGGCATGATGTGGTGAACACACACTTGATGTTCACCTCTTGT CTTCCTGGTTGGTGCGGACGGCGCATGGGAACGACCGCGATTGACTCGCA AGGTCAAGGGTGCAACTTTTAAGGGATGGTTTACCCTCGGTAGTTTACGA TAACGATTCAAAAACTTGGCCTCGTTAGCGGCAACATCTCCGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6868:2703..6095+

>mRNA_Ecto-sp13_S_contig6868.17831.1 ID=mRNA_Ecto-sp13_S_contig6868.17831.1|Name=mRNA_Ecto-sp13_S_contig6868.17831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6868:2703..6095+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAAGTCGGGGGTGAAATTCGGCCTCATTGGGACGGCTTCCTCCCT
GAAGAAGGGCTCATCATCAGCAGCAGGAGCAGCAGGCAGGGGGCGCCCGA
TAGGGTCCAAGCCGGCACCGCGACGACGCCCGCCAGGCGCGACGTCGGTC
TTCGACGCCAACTCGGACGACGAGGAGGAGGAATCTAAGGGAGACCTCAG
CGGGGTGACGGCGGTGAACAAGAGGCTGGCGGCGATCTCGGCCAAGCAGG
AGAAGCAGGCGAAGAAGGAGTACGAGGACGCCCTGCAGGCCGACCCGTCC
GTGTTCGACTACGACCGCGTGTACGATGGCATGAAGGAGAGTCGCGAGTC
TAAGGTTGCGGCAGCGACGGTGGCGCGCGAGAAGGAAAAGAGGCAGCCCA
AGTACATCGGCAACCTCCTCAAGCAGGCCAAGATGAGGGCGGTGGAGTCG
GACCGCATCTTCGACAGGAAGTTGCAGAAGGAGAGAGAGGCGCAAGACAA
GTTAGAAGGCGAGGCGACGATGAAATTCGTCACGTCCGCGTACAAGAAGA
AGCTCATGGAGCAGAAGAAGTGGGAGCTCCAGCAGCAGCTAGAGGACGAG
AGGGAGCAGCGGAATGACGTCACCAAGACGGGCATGGGCGGGTTTTACTC
GAACCTTATCACCAAGAACATCGCCATGGGCGGCGACGTCGAGAAGTCTG
CCAATAGCGCCTTCACTGCGGGTTCCAAGCGGCACGCGGCCACCGACGAA
TACGAAATGCAGGACGGGAACGAACAGGCGGCAGCAACAGCCAAAAGAAA
AGAGGCCGCAACCGCCGCCGCAGCCGTCGCCAGCGAAGGGGGCCCCACGA
ACGGCGCCAGCCAGGGGGGTAGGGAGGGTAGGGAAGGTAGGGATGGGGGC
GAAGCAGACAGCAGTTCGGGGAGAACCGACGAGTCCGGCGGCCCCACGGC
TAGGATGGTCGACCCCCGCGCCGGAGAACAGAAGAAAAGCAGAAGAGACG
AGGCGGGGGTGCGAGATTCTGAGCGCCGACGACGAGACGATTCGGGTGAG
GCCGTGGACAACGTCACGAAGCGGGCTCGCCTGGCGGGAGAGGCGGCGGG
TGGGGGCGGGGTAGAGCAGCGGCAGGATGAGAGAACAGACGAGGATAAAA
GCGCGGCGGAGGCGGCGGACAAGGCACGGGAGGCCGCGGCCGCGAAGGCG
AAGAAGGAGGCGGCCGTCAGGGCGGCTCGGGAGCGATTCCTTGCGAGAAA
GAAGGCCGCATGA
back to top