mRNA_Ecto-sp13_S_contig6864.17828.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6864.17828.1
Unique NamemRNA_Ecto-sp13_S_contig6864.17828.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: A0A6H5KG72_9PHAE (S1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG72_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.680e-71
Identity = 114/127 (89.76%), Postives = 115/127 (90.55%), Query Frame = 1
Query:    1 VTHKIHRTFAVDHDGHETAQRPANMARVAATSALLAKKKGRGGGNNEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 381
            VTH IHRTFAVDHDG ETA+RPANM R AATSALLAK        NEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK
Sbjct:   47 VTHSIHRTFAVDHDGQETARRPANMGRAAATSALLAKXXXXXXXXNEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 173          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: D7G916_ECTSI (S1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G916_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.440e-57
Identity = 103/130 (79.23%), Postives = 103/130 (79.23%), Query Frame = 1
Query:   73 MARVAATSALLAKKKGRGGGNNEGAKPRERKEKDDVIE---------------------------VEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 381
            MARVAATSALLAKKKGRGGGNNEGAKPRERKEKDDVIE                           VEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK
Sbjct:    1 MARVAATSALLAKKKGRGGGNNEGAKPRERKEKDDVIEPDSIFTSHAEKDCSAKACRMLVLLSQKVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 130          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: A0A835YXL6_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.830e-46
Identity = 77/97 (79.38%), Postives = 86/97 (88.66%), Query Frame = 1
Query:   91 TSALLAKKKGRGGGNNEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 381
            T+ +  KKKGRGG N EGA PRE+K KDDVIEVEGVVKE LPSAMFRVE+  T +++LCTISG+IRKNFVRILVGDPV+VELSPYDLTRGRITFRYK
Sbjct:   48 TTIMHQKKKGRGGQNTEGATPREKKVKDDVIEVEGVVKESLPSAMFRVEISPTNQIILCTISGKIRKNFVRILVGDPVKVELSPYDLTRGRITFRYK 144          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: A0A7S4EBF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBF0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.230e-32
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1
Query:  154 RERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 375
            RERK KDD IEV+GVV E LPSA FRVE+GAT +V+LCTISG+IRKNFV+ILVGD V+VELSPYDLTRGRITFR
Sbjct:   54 RERKVKDDKIEVDGVVTEALPSANFRVEIGATKQVLLCTISGKIRKNFVKILVGDSVKVELSPYDLTRGRITFR 127          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: A0A6U1NIU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NIU1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 8.560e-32
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 1
Query:  169 KDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 381
            K+DVIEVEGVVKE LP+AMFRVE+ A   V+LCTISG+IRKNFV++LVGD VRVELSPYDLTRGRITFRY+
Sbjct:   90 KEDVIEVEGVVKESLPNAMFRVELEANQNVILCTISGKIRKNFVKVLVGDSVRVELSPYDLTRGRITFRYR 160          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: A0A1Z5KC21_FISSO (Translation initiation factor IF-1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC21_FISSO)

HSP 1 Score: 108 bits (271), Expect = 3.760e-28
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   91 TSALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 381
            +SA+  KK+ R  GN    K  R RK KDDVIEVE VV EGLP+AMFR  + GA  + + +L TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFRY+
Sbjct:   25 SSAIYGKKEARAQGNERKNKTERVRKTKDDVIEVEAVVVEGLPNAMFRCAIDGAPESQEPILATISGKIRKNFVKILVGDKVLIELSPYDLTRGRITFRYR 125          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: A0A7R9YY09_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY09_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.370e-28
Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   58 QRPANMARVAAT-SALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 375
            Q P    R AA  +AL  KK  R  GN    K  RE+K+KDDVIEVEGVV E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   43 QAPVVDVRFAAPKTALFGKKAARAQGNERKNKTVREKKKKDDVIEVEGVVLESLPNAMFRCAIDGAPDTQEPVLATISGKIRKNFVKILVGDKVTIELSPYDLTRGRITFR 153          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: A0A7S4K9U1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9U1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.760e-27
Identity = 64/108 (59.26%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   64 PANMARVAATSALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 375
            P +++     + L  KK  R  GN    +P RE+K KDDVIEVEG V E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   46 PVHVSVAVPNTILFGKKAARAQGNERKNRPVREKKVKDDVIEVEGTVLESLPNAMFRCAIDGAPETQEPVLATISGKIRKNFVKILVGDTVTIELSPYDLTRGRITFR 153          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: K0SHA7_THAOC (S1-like domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHA7_THAOC)

HSP 1 Score: 107 bits (267), Expect = 3.430e-27
Identity = 65/106 (61.32%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   70 NMARVAATSALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 375
            +  R AAT++L  KK  R  GN    K  R +K KDDVIEVEG V E +P+AMFR  + GA  T   VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   47 HSCRPAATTSLFGKKAARAAGNERKNKTVRVKKPKDDVIEVEGTVIESMPNAMFRCTIDGAPDTQDPVLATISGKIRKNFVKILVGDSVTIELSPYDLTRGRITFR 152          
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Match: A0A1E7F4X1_9STRA (Translation initiation factor IF-1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4X1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.520e-27
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   61 RPANMARVAATSALLAKKKGRGGGN-NEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRV---EVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 381
            R   ++ +++ SAL  KK+ R  GN ++  K R +K KDDVIEV G+V E LP+AMFR    E   T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR++
Sbjct:   45 RTVPVSSISSGSALFGKKEARAQGNESKRKKNRVKKVKDDVIEVNGIVLESLPNAMFRCAIEEAPDTQEPVLATISGKIRKNFVKILVGDKVLMELSPYDLTRGRITFRHR 155          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6864.17828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG72_9PHAE5.680e-7189.76S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
D7G916_ECTSI1.440e-5779.23S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YXL6_9STRA5.830e-4679.38S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4EBF0_9STRA1.230e-3281.08Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U1NIU1_9STRA8.560e-3280.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5KC21_FISSO3.760e-2863.37Translation initiation factor IF-1 n=1 Tax=Fistuli... [more]
A0A7R9YY09_9STRA4.370e-2863.06Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4K9U1_9STRA1.760e-2759.26Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0SHA7_THAOC3.430e-2761.32S1-like domain-containing protein n=1 Tax=Thalassi... [more]
A0A1E7F4X1_9STRA3.520e-2756.76Translation initiation factor IF-1 n=1 Tax=Fragila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6864contigEcto-sp13_S_contig6864:7038..7812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score184.5
Seed ortholog evalue3.1e-44
Seed eggNOG ortholog2880.D7G916
Preferred nameinfA
Model size384
KEGG koko:K02518
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009507,GO:0009536,GO:0043021,GO:0043022,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044877
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGs2S8M9@2759,COG0361@1
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-15_002280.1
Cds size384
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463942.8372002-CDS-Ecto-sp13_S_contig6864:7037..72351681463942.8372002-CDS-Ecto-sp13_S_contig6864:7037..7235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6864 7038..7235 -
1681463942.8503382-CDS-Ecto-sp13_S_contig6864:7626..78121681463942.8503382-CDS-Ecto-sp13_S_contig6864:7626..7812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6864 7627..7812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6864.17828.1prot_Ecto-sp13_S_contig6864.17828.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6864 7038..7812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6864.17828.1

>prot_Ecto-sp13_S_contig6864.17828.1 ID=prot_Ecto-sp13_S_contig6864.17828.1|Name=mRNA_Ecto-sp13_S_contig6864.17828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
VTHKIHRTFAVDHDGHETAQRPANMARVAATSALLAKKKGRGGGNNEGAK
PRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFV
RILVGDPVRVELSPYDLTRGRITFRYK*
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mRNA from alignment at Ecto-sp13_S_contig6864:7038..7812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6864.17828.1 ID=mRNA_Ecto-sp13_S_contig6864.17828.1|Name=mRNA_Ecto-sp13_S_contig6864.17828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=775bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6864:7038..7812- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTACGCATAAGATCCATCGAACGTTTGCGGTCGACCACGATGGCCATGA GACCGCCCAGCGGCCGGCGAACATGGCGAGGGTTGCAGCAACTAGCGCAC TTCTAGCAAAAAAGAAGGGAAGGGGAGGCGGGAACAACGAAGGGGCCAAG CCGCGGGAACGGAAGGAGAAGGACGATGTCATAGAGGTATGACGCAAGAT CGTTAGCACACCTTACGTACAACTCCGGCTTCAGTTTCAGGAGAAAATTT GCCTGAATGGTGTGGTTACATGTTGTCCACGTCTGCACGATGTAACGTCC ACGTCTGCACGATGTAATTTTATGAAAATGATTGGTATCTTTCGGTATAG GACGAGATACCGTGACTTCGTCGAGCACCACCAAAGCACCCGAAACCATT CTGCAGTGATGTCATTTCCGCCGTGCAGCATTTTCAGCGCTATGCGGGTG TTGCACACTGTTGATCTGCCTTGGCATTTGTTGATCCCGACAGCCCACGA TATTATTTTCACATCATATGCGGAGAAATATTGGTTCAGCGAAGGCTTGT CGAATGCCGGTGTTGTTTTCGCAACAGGTGGAAGGTGTGGTAAAGGAGGG GCTGCCCAGTGCGATGTTTCGTGTCGAAGTCGGGGCAACGGGAAAGGTGG TCTTGTGCACCATTAGCGGAAGGATACGCAAAAACTTCGTCCGGATTTTG GTCGGAGACCCGGTTCGGGTAGAGCTATCTCCGTACGATCTCACACGCGG CAGGATCACCTTCCGCTACAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6864:7038..7812-

>mRNA_Ecto-sp13_S_contig6864.17828.1 ID=mRNA_Ecto-sp13_S_contig6864.17828.1|Name=mRNA_Ecto-sp13_S_contig6864.17828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6864:7038..7812- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTACGCATAAGATCCATCGAACGTTTGCGGTCGACCACGATGGCCATGA
GACCGCCCAGCGGCCGGCGAACATGGCGAGGGTTGCAGCAACTAGCGCAC
TTCTAGCAAAAAAGAAGGGAAGGGGAGGCGGGAACAACGAAGGGGCCAAG
CCGCGGGAACGGAAGGAGAAGGACGATGTCATAGAGGTGGAAGGTGTGGT
AAAGGAGGGGCTGCCCAGTGCGATGTTTCGTGTCGAAGTCGGGGCAACGG
GAAAGGTGGTCTTGTGCACCATTAGCGGAAGGATACGCAAAAACTTCGTC
CGGATTTTGGTCGGAGACCCGGTTCGGGTAGAGCTATCTCCGTACGATCT
CACACGCGGCAGGATCACCTTCCGCTACAAGTAA
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