mRNA_Ecto-sp13_S_contig6864.17827.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6864.17827.1
Unique NamemRNA_Ecto-sp13_S_contig6864.17827.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6864.17827.1 vs. uniprot
Match: A0A6H5KAB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.960e-7
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = -2 
Query:  864 MYKVYEEAFNKQRKEERKSINDEERKDSKEDSSCGSMSRPASDSK-REGPPS 1016
            M KVYE+AFNKQR EERKS   +E++DS EDS+ GS+SRPA DSK R+GPPS
Sbjct:    1 MDKVYEQAFNKQRVEERKSNEGKEKEDSTEDSTRGSLSRPARDSKKRKGPPS 52
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BLAST of mRNA_Ecto-sp13_S_contig6864.17827.1 vs. uniprot
Match: A0A6H5JZW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.230e-6
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = -2 
Query:  846 RKEERKSINDEERKDSKEDSSCGSMSRPASDSK-REGPPSREYPPA 980
            R+EE K   D+E+KD KEDSS GS+SRPASDSK R+GPPSREYPPA
Sbjct:   29 REEEGKGNEDKEKKDGKEDSSWGSLSRPASDSKKRKGPPSREYPPA 74
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BLAST of mRNA_Ecto-sp13_S_contig6864.17827.1 vs. uniprot
Match: A0A6H5JJV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV3_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.580e-6
Identity = 42/80 (52.50%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:  736 PRVPTHFP--YFLR------RFCYIAEHKKHEIWDRKFICRSELRAGGYSLEGGPSLL-ESLAGRDILPQLLSSLLSFLS 948
            PR+PT FP  + LR       FC  +   +    D +   RS   AGGYSLEGGP LL ESLAGRD LPQ LSSL SF S
Sbjct:    8 PRLPTGFPLAHLLRLNFSTSSFCTFSYALRPLFPDAR---RSVNGAGGYSLEGGPFLLLESLAGRDKLPQPLSSLPSFFS 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6864.17827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KAB0_9PHAE5.960e-769.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW1_9PHAE2.230e-673.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV3_9PHAE4.580e-652.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6864contigEcto-sp13_S_contig6864:1198..2304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1107
Hectar predicted targeting categoryother localisation
Exons1
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463942.7945523-CDS-Ecto-sp13_S_contig6864:1197..17581681463942.7945523-CDS-Ecto-sp13_S_contig6864:1197..1758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6864 1198..1758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463942.8074634-UTR-Ecto-sp13_S_contig6864:1758..23041681463942.8074634-UTR-Ecto-sp13_S_contig6864:1758..2304Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6864 1759..2304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6864.17827.1prot_Ecto-sp13_S_contig6864.17827.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6864 1198..1758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6864.17827.1

>prot_Ecto-sp13_S_contig6864.17827.1 ID=prot_Ecto-sp13_S_contig6864.17827.1|Name=mRNA_Ecto-sp13_S_contig6864.17827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
VTSRAEWNDPKGGGPCPAQTAFLYLCTAPSDSIVGTTPTRFRPFSYGIGD
TVHSLEGSARGLLKIVNKTNHVFEHRRTGAGRRSTPGEPTNTKQSGASAP
VSCFEQECGKRQGCDDVMHQWRVRSEDDPVSIFGFGFSSRTRCPQVFPRC
PHPAKAVPVLRCRRIAVFHFQGPTENICKQPKYKHI*
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mRNA from alignment at Ecto-sp13_S_contig6864:1198..2304+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6864.17827.1 ID=mRNA_Ecto-sp13_S_contig6864.17827.1|Name=mRNA_Ecto-sp13_S_contig6864.17827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6864:1198..2304+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACGAGTCGAGCTGAGTGGAACGACCCAAAAGGAGGTGGCCCATGCCC
CGCCCAAACAGCATTCCTGTATTTGTGCACAGCACCCTCAGACAGTATTG
TTGGAACGACACCCACACGTTTTAGACCGTTTTCTTACGGAATCGGAGAC
ACCGTCCACAGCCTTGAGGGGTCTGCCCGAGGACTGCTGAAGATCGTAAA
CAAAACAAATCACGTTTTCGAGCACCGACGCACCGGCGCAGGTCGCCGTT
CCACCCCTGGAGAACCAACCAACACCAAACAATCCGGAGCGAGTGCGCCC
GTCTCGTGTTTTGAGCAAGAGTGTGGGAAGCGTCAGGGTTGTGATGATGT
GATGCATCAGTGGCGAGTCCGGTCGGAGGATGATCCGGTTTCTATCTTCG
GATTTGGATTTTCGAGCCGAACCCGTTGTCCACAAGTCTTTCCGCGATGT
CCACACCCGGCCAAAGCAGTGCCAGTACTTCGCTGTCGCCGGATCGCCGT
TTTCCATTTTCAGGGGCCGACAGAAAACATTTGCAAACAACCAAAATATA
AACACATCTGAAACATGTATGTACCGTAAGCTACAGAGTTTTTCCCCCGG
GTTAGATTTCTTCCCTATACCATTCGGCCTGGAAGCATGAGTTCGTCGAC
TTAGCCCCGGGGTAGATCGTTTTCGACCAAAAAAAAGTACATCCCTCGGA
TATGTCAGTTTCCCCAACCGGGGGTACCACTTTTCCCACGAGTTCCCACG
CATTTCCCATATTTTCTGAGACGATTTTGTTACATCGCGGAGCACAAAAA
GCATGAGATATGGGACAGAAAATTCATTTGCAGATCTGAGCTTCGAGCTG
GCGGGTACTCTCTGGAAGGCGGGCCCTCCCTCTTGGAATCACTCGCGGGA
CGAGACATACTCCCACAGCTGCTGTCCTCCTTGCTGTCTTTTCTCTCTTC
GTCGTTGATGCTCTTACGTTCCTCCTTCCTCTGCTTGTTGAACGCTTCCT
CGTAAACTTTATACATGTCAGTTTCACCACTCTCTGTGTTGAGTGTGTGG
ACCATCCCTATCTTGAATAACCCCCCATGGGCCGCGGGTTCCCCCCAGAG
TTGCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6864:1198..2304+

>mRNA_Ecto-sp13_S_contig6864.17827.1 ID=mRNA_Ecto-sp13_S_contig6864.17827.1|Name=mRNA_Ecto-sp13_S_contig6864.17827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6864:1198..2304+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACGAGTCGAGCTGAGTGGAACGACCCAAAAGGAGGTGGCCCATGCCC
CGCCCAAACAGCATTCCTGTATTTGTGCACAGCACCCTCAGACAGTATTG
TTGGAACGACACCCACACGTTTTAGACCGTTTTCTTACGGAATCGGAGAC
ACCGTCCACAGCCTTGAGGGGTCTGCCCGAGGACTGCTGAAGATCGTAAA
CAAAACAAATCACGTTTTCGAGCACCGACGCACCGGCGCAGGTCGCCGTT
CCACCCCTGGAGAACCAACCAACACCAAACAATCCGGAGCGAGTGCGCCC
GTCTCGTGTTTTGAGCAAGAGTGTGGGAAGCGTCAGGGTTGTGATGATGT
GATGCATCAGTGGCGAGTCCGGTCGGAGGATGATCCGGTTTCTATCTTCG
GATTTGGATTTTCGAGCCGAACCCGTTGTCCACAAGTCTTTCCGCGATGT
CCACACCCGGCCAAAGCAGTGCCAGTACTTCGCTGTCGCCGGATCGCCGT
TTTCCATTTTCAGGGGCCGACAGAAAACATTTGCAAACAACCAAAATATA
AACACATCTGA
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