mRNA_Ecto-sp13_S_contig6856.17819.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6856.17819.1
Unique NamemRNA_Ecto-sp13_S_contig6856.17819.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6856.17819.1 vs. uniprot
Match: D8LHU9_ECTSI (Diacylglycerol kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU9_ECTSI)

HSP 1 Score: 533 bits (1372), Expect = 9.300e-183
Identity = 333/397 (83.88%), Postives = 347/397 (87.41%), Query Frame = 1 
Query:    1 LGRHRRLILPPIAVLKDQPRKKRGLIRDAVSKVRRVLPGHRDDECEPPSYSVDPNDPEAVAPATGGASAGQGXXXXXXXXXXXXXXXXXAVKEAAAALDVSGAKEVGSRLAGKVRVAGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKVLDAMPIELEDDVWEEALKGEGYRSVNNDVDDESGDGDDDSETSPPATSIREAEVDGVWEEALSLSAAAKEEGGESPLAGDAEGERTAAGTAVKGLAGGEKASSRRGGQSLRPRPVAGEKAAEEAVAERGGDERTVGWSSEEQGSPGIAAVDGDGGQRDGDXXXXG----DSGGAWVSGKSADGEGGAEEDNNVAVTAAAEESGPAGRGDAPAISSPGNKGWSDSSSQEDGGVADDVIPEGARETIVS 1179
            LGRHRRLILPP AVLKDQPRKKRGLIRDAVSKVRRVLPGHR+DEC+P SYSVDPNDPEAVAPATGGASAGQ XXXXXXXXXXXXX    AV+EAAAALDVSGAK VGSRLAGKVR AGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKVLDAMPIELEDDVWEEALKGEGYRSVN DVDD              ATSIRE+EVDGVWEEALSLSAAAKEE GESPLAGDAEGERTAAGTAVKGLAGG++ASSRRGGQSLRPRP AGE+ AEEAVAERGGDERT+GWSSEE+GSPGIAA DGD       XXXX     +SGGAWVSGKSADGEGG  E+NNVAVTAAA ESGPAG GDAPA SSP ++ WSDSSS EDGG+ DD IPEGARETIVS
Sbjct:  293 LGRHRRLILPPTAVLKDQPRKKRGLIRDAVSKVRRVLPGHREDECDPSSYSVDPNDPEAVAPATGGASAGQXXXXXXXXXXXXXXGFVEAVREAAAALDVSGAKGVGSRLAGKVRDAGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKVLDAMPIELEDDVWEEALKGEGYRSVNKDVDDXXXXXXXXXXXXXXATSIRESEVDGVWEEALSLSAAAKEEEGESPLAGDAEGERTAAGTAVKGLAGGDEASSRRGGQSLRPRPAAGEETAEEAVAERGGDERTIGWSSEERGSPGIAADDGDXXXXXXXXXXXXXXXXESGGAWVSGKSADGEGGVGEENNVAVTAAAAESGPAG-GDAPATSSPDDEAWSDSSSHEDGGLEDDDIPEGARETIVS 688
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BLAST of mRNA_Ecto-sp13_S_contig6856.17819.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 516 bits (1328), Expect = 4.910e-168
Identity = 333/397 (83.88%), Postives = 340/397 (85.64%), Query Frame = 1 
Query:    1 LGRHRRLILPPIAVLKDQPRKKRGLIRDAVSKVRRVLPGHRDDECEPPSYSVDPNDPEAVAPATGGASAGQGXXXXXXXXXXXXXXXXXAVKEAAAALDVSGAKEVGSRLAGKVRVAGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKVLDAMPIELEDDVWEEALKGEGYRSVNNDVDDESGDGDDDSETSPPATSIREAEVDGVWEEALSLSAAAKEEGGESPLAGDAEGERTAAGTAVKGLAGGEKASSRRGGQSLRPRPVAGEKAAEEAVAERGGDERTVGWSSEEQGSPGIAAVDGDGGQRDGDXXXXGDSGG----AWVSGKSADGEGGAEEDNNVAVTAAAEESGPAGRGDAPAISSPGNKGWSDSSSQEDGGVADDVIPEGARETIVS 1179
            LGRHRRLILPPIAVLKDQPRKKRGLIRDAVSKVRRVLPGHRDDECEPP YSVDPNDPE VAPATGGASAGQ XXXXXXXXXXXXXX   AV+EAAAALDVSGAKEVGSRLAGKVR AGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKVLDAMPIELEDDVWEEALKGEG RSV+ DVDD              ATSIREAEVDGVWEEALSLSAAAK E GES LAGDAEGERTAAGTAVKGL GGEKASSRRGGQSLRPRP A E+AAEEAVAERGGDERTVG       SPGIAAVDGDGGQ DG XXXX         AW SGKSAD EGG  E+NNV VTAAA ESGPAG GDAPAISSP ++ W+DSSSQEDGGV DDVIPEGARETIVS
Sbjct:  303 LGRHRRLILPPIAVLKDQPRKKRGLIRDAVSKVRRVLPGHRDDECEPPPYSVDPNDPETVAPATGGASAGQXXXXXXXXXXXXXXXFVEAVREAAAALDVSGAKEVGSRLAGKVRDAGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKVLDAMPIELEDDVWEEALKGEGCRSVDKDVDDXXXXXXXXXXXXXXATSIREAEVDGVWEEALSLSAAAKGEEGESSLAGDAEGERTAAGTAVKGLGGGEKASSRRGGQSLRPRPAADEEAAEEAVAERGGDERTVG-------SPGIAAVDGDGGQWDGXXXXXXXXXXXXXXAWGSGKSADDEGGVGEENNVGVTAAAAESGPAG-GDAPAISSPVDEAWTDSSSQEDGGVEDDVIPEGARETIVS 691
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6856.17819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU9_ECTSI9.300e-18383.88Diacylglycerol kinase (Partial) (Fragment) n=1 Tax... [more]
A0A6H5LB27_9PHAE4.910e-16883.88Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6856contigEcto-sp13_S_contig6856:5913..7923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score549.3
Seed ortholog evalue1.5e-153
Seed eggNOG ortholog2880.D8LHU9
Preferred nameDGKK
Model size1179
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006793,GO:0006796,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0009611,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0023052,GO:0030168,GO:0032501,GO:0035556,GO:0042060,GO:0044237,GO:0044238,GO:0044255,GO:0044464,GO:0046339,GO:0046486,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0071704,GO:0071944
Exons3
EggNOG free text desc.diacylglycerol kinase activity
EggNOG OGsKOG1170@1,KOG1170@2759
Ec32 ortholog descriptiondiacylglycerol kinase
Ec32 orthologEc-18_000560.1
EC2.7.1.107
Cds size1179
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463942.0032246-CDS-Ecto-sp13_S_contig6856:5912..67521681463942.0032246-CDS-Ecto-sp13_S_contig6856:5912..6752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6856 5913..6752 -
1681463942.01931-CDS-Ecto-sp13_S_contig6856:7053..73251681463942.01931-CDS-Ecto-sp13_S_contig6856:7053..7325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6856 7054..7325 -
1681463942.0846448-CDS-Ecto-sp13_S_contig6856:7856..79231681463942.0846448-CDS-Ecto-sp13_S_contig6856:7856..7923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6856 7857..7923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6856.17819.1prot_Ecto-sp13_S_contig6856.17819.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6856 5913..7923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6856.17819.1

>prot_Ecto-sp13_S_contig6856.17819.1 ID=prot_Ecto-sp13_S_contig6856.17819.1|Name=mRNA_Ecto-sp13_S_contig6856.17819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=393bp
LGRHRRLILPPIAVLKDQPRKKRGLIRDAVSKVRRVLPGHRDDECEPPSY
SVDPNDPEAVAPATGGASAGQGTGSSDGGGSDQGSGFVEAVKEAAAALDV
SGAKEVGSRLAGKVRVAGEKVLDAGFDVAAGLDVAGDSAKEGGRRLAEKV
LDAMPIELEDDVWEEALKGEGYRSVNNDVDDESGDGDDDSETSPPATSIR
EAEVDGVWEEALSLSAAAKEEGGESPLAGDAEGERTAAGTAVKGLAGGEK
ASSRRGGQSLRPRPVAGEKAAEEAVAERGGDERTVGWSSEEQGSPGIAAV
DGDGGQRDGDGQGQGDSGGAWVSGKSADGEGGAEEDNNVAVTAAAEESGP
AGRGDAPAISSPGNKGWSDSSSQEDGGVADDVIPEGARETIVS
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mRNA from alignment at Ecto-sp13_S_contig6856:5913..7923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6856.17819.1 ID=mRNA_Ecto-sp13_S_contig6856.17819.1|Name=mRNA_Ecto-sp13_S_contig6856.17819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2011bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6856:5913..7923- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGGCCGACACCGCCGCTTGATCCTCCCCCCGATCGCGGTGCTCAAGGA
CCAGCCGCGAAAAAAACGTAAGAGGACCTCACGCGAGGGAGGTGTACTCA
TATAAGCGCGTGCCGTCGTCTTACCACCATTGACCTCGCATCCCGATGGA
GCGATATGCCGGGTTTTGGCCGGCCCAGGCTACATTTTACAAGGATGAAC
CGGAAGCTGGTCATGACTCCCGCGAGGGGGGGAGGGGTGATACCGTGTAC
ATCAGTTTTCTCCTTGTTTGGTCAAGCAACAGCAGTCGTCGCCGCATTAA
AAACGATCGGTTTAGATTGCCTTCTTCCCGCGTAAGTTTTTTTTTTTCAC
AACCATCGTGGCCCGTGAGTTGAAAAGCATGGGACAGGGCCGACACTTTT
TGAGATGCTTCCCCCGCGTTCAGACGCTCAAGAGTATTAGAAAAAGTCCG
TCCATGAAAAGAGGACCGCTGTATTCCCCTCTAGCTCAAGCCCGATCACC
GCTCAGCATTACGACCTTCCCCTTGAAATATCTGCTCCTCCTCCCGCCCC
CCCCCCCGCCCCCCTAAATCCTGGCATTCCTATTGCTATACTGTACAGGC
GGTCTGATCCGGGACGCGGTGAGCAAGGTGCGGAGGGTCCTTCCCGGACA
CCGCGACGACGAGTGCGAGCCGCCTTCGTACAGCGTCGATCCTAACGACC
CCGAAGCGGTAGCGCCGGCGACGGGGGGAGCATCGGCCGGGCAAGGCACT
GGCTCTTCGGACGGAGGAGGGTCCGACCAGGGGAGCGGCTTCGTGGAGGC
CGTGAAGGAGGCGGCGGCGGCGCTGGACGTGTCGGGGGCGAAGGAGGTTG
GGAGCCGGCTCGCCGGAAAGGTGAGAGATAGAGTTGAGGCGGAGCGTGGA
AGTCCCCCGAAAGGGATCGATCGGGTGCATGCACCTGCCAGCAGGCGTTG
ATCGCGTCGTCGCTGTGAGATGTTCTGTTTTGCGACGTATGTACGGGTCA
CTCTCTTTTTTTTTTCTGGCCCCGAACACCGATCGCATGGTTGGTGTATA
ATGCGGCTGCCGTGGAGGAAATACATCAAGTTTCCTAGGCCTTGGAACGA
GCGAAAGTTAACGATGAACGCTGCTGTTTTTGTCCACCAACTGCCGCCAC
CGCGGCCGCTGTCGTGCAAAGGTTCGGGTCGCCGGCGAGAAGGTTTTGGA
TGCCGGGTTCGACGTGGCGGCTGGCCTTGATGTCGCCGGGGACAGCGCTA
AGGAGGGGGGGCGGCGGCTGGCGGAGAAGGTGTTGGACGCCATGCCGATC
GAGCTCGAGGACGATGTGTGGGAAGAGGCGTTAAAGGGGGAGGGATACAG
GAGTGTGAACAACGATGTAGATGACGAGAGTGGTGATGGTGACGATGATT
CTGAGACGTCGCCCCCTGCGACTAGTATTCGTGAAGCCGAGGTCGACGGA
GTGTGGGAGGAGGCCCTGTCCCTGTCGGCTGCGGCGAAAGAAGAGGGGGG
GGAGTCGCCGCTCGCGGGCGATGCCGAGGGGGAGAGGACGGCCGCGGGGA
CGGCCGTGAAAGGGTTGGCGGGGGGAGAGAAGGCGTCGTCGAGGCGCGGG
GGCCAGTCATTGCGACCAAGGCCAGTAGCGGGTGAAAAAGCAGCGGAAGA
AGCTGTAGCGGAGAGGGGAGGGGATGAGCGGACCGTCGGGTGGTCGTCTG
AAGAGCAAGGGTCTCCTGGCATTGCAGCAGTTGACGGTGATGGCGGTCAA
AGGGATGGCGATGGTCAAGGTCAGGGTGACAGCGGCGGCGCGTGGGTTTC
GGGGAAAAGTGCGGACGGTGAAGGCGGGGCCGAAGAAGATAACAACGTTG
CCGTGACAGCGGCAGCTGAAGAGTCGGGCCCTGCGGGAAGAGGGGATGCA
CCGGCGATATCATCTCCTGGCAACAAAGGTTGGAGCGATTCGTCGTCGCA
GGAGGACGGGGGCGTGGCGGATGACGTCATCCCTGAGGGGGCTAGGGAGA
CGATCGTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6856:5913..7923-

>mRNA_Ecto-sp13_S_contig6856.17819.1 ID=mRNA_Ecto-sp13_S_contig6856.17819.1|Name=mRNA_Ecto-sp13_S_contig6856.17819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6856:5913..7923- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGGCCGACACCGCCGCTTGATCCTCCCCCCGATCGCGGTGCTCAAGGA
CCAGCCGCGAAAAAAACGCGGTCTGATCCGGGACGCGGTGAGCAAGGTGC
GGAGGGTCCTTCCCGGACACCGCGACGACGAGTGCGAGCCGCCTTCGTAC
AGCGTCGATCCTAACGACCCCGAAGCGGTAGCGCCGGCGACGGGGGGAGC
ATCGGCCGGGCAAGGCACTGGCTCTTCGGACGGAGGAGGGTCCGACCAGG
GGAGCGGCTTCGTGGAGGCCGTGAAGGAGGCGGCGGCGGCGCTGGACGTG
TCGGGGGCGAAGGAGGTTGGGAGCCGGCTCGCCGGAAAGGTTCGGGTCGC
CGGCGAGAAGGTTTTGGATGCCGGGTTCGACGTGGCGGCTGGCCTTGATG
TCGCCGGGGACAGCGCTAAGGAGGGGGGGCGGCGGCTGGCGGAGAAGGTG
TTGGACGCCATGCCGATCGAGCTCGAGGACGATGTGTGGGAAGAGGCGTT
AAAGGGGGAGGGATACAGGAGTGTGAACAACGATGTAGATGACGAGAGTG
GTGATGGTGACGATGATTCTGAGACGTCGCCCCCTGCGACTAGTATTCGT
GAAGCCGAGGTCGACGGAGTGTGGGAGGAGGCCCTGTCCCTGTCGGCTGC
GGCGAAAGAAGAGGGGGGGGAGTCGCCGCTCGCGGGCGATGCCGAGGGGG
AGAGGACGGCCGCGGGGACGGCCGTGAAAGGGTTGGCGGGGGGAGAGAAG
GCGTCGTCGAGGCGCGGGGGCCAGTCATTGCGACCAAGGCCAGTAGCGGG
TGAAAAAGCAGCGGAAGAAGCTGTAGCGGAGAGGGGAGGGGATGAGCGGA
CCGTCGGGTGGTCGTCTGAAGAGCAAGGGTCTCCTGGCATTGCAGCAGTT
GACGGTGATGGCGGTCAAAGGGATGGCGATGGTCAAGGTCAGGGTGACAG
CGGCGGCGCGTGGGTTTCGGGGAAAAGTGCGGACGGTGAAGGCGGGGCCG
AAGAAGATAACAACGTTGCCGTGACAGCGGCAGCTGAAGAGTCGGGCCCT
GCGGGAAGAGGGGATGCACCGGCGATATCATCTCCTGGCAACAAAGGTTG
GAGCGATTCGTCGTCGCAGGAGGACGGGGGCGTGGCGGATGACGTCATCC
CTGAGGGGGCTAGGGAGACGATCGTGTCG
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