mRNA_Ecto-sp13_S_contig6850.17809.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6850.17809.1
Unique NamemRNA_Ecto-sp13_S_contig6850.17809.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6850.17809.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 378 bits (970), Expect = 2.640e-116
Identity = 326/455 (71.65%), Postives = 335/455 (73.63%), Query Frame = 1 
Query:    4 GHELDAGVVDARSSNGSLSKSATVSDAAVASISPATGERANXXXXXXXXXXXXXGKRRTGKKPRPAEKGLKVAATALPATSRSEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQRDGRLVADLALPSARQQPPPEPRGGVVVDATAXXXXAARTSHAGKPMPLARSKSGGPATPADEEEGPTMAALFGEEEDNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDVADGAMPSAAAAPAAPATKSYPPLRTAPEKKPAWREGERYGVVLGDSFYSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGENNPWQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWRGRGSGTVGDVGGGGQQQRWAAEMEYASRDPSNPEPVRFTGDAVRYEYLRAV 1368
            GHE DAGVVDARSS G LSKSA  S+AAVAS+ PATGER               GKRRTGKKP  AE+ LK AATA+PA SRS    XXXXXXXXXXXX                                                    A  R GRL ADLAL  ARQQ   EPRGGVVVDA A    AARTSHAGKP P A SKSGG ATPADEEEGP+MAALFGEEEDNE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  T VADGAMPSAAAA AAPATKSYPPL+TAPEKKPAWREGERYGVVLG+SFY S XXXXXXXXXXXXXXXXXXXXXXXXXXXXX TGENNP QYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWRG      GDVGGGGQQQRWAAEMEY SRDPSNPEPVRFTGDAVR + +  V
Sbjct:  559 GHEKDAGVVDARSSEGPLSKSAAASNAAVASLCPATGERTKAPPVRSPAKQPVAGKRRTGKKPGAAEEKLKGAATAVPAASRSX---XXXXXXXXXXXXGARAGGGIAESALPTAGGSHAKKRPRSPLPSPRQEEEGGRPERHGEAKRRAAAAPRGGRLAADLALLPARQQRQTEPRGGVVVDANATA--AARTSHAGKPTPSASSKSGGSATPADEEEGPSMAALFGEEEDNEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADTGVADGAMPSAAAA-AAPATKSYPPLQTAPEKKPAWREGERYGVVLGESFYGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TGENNPGQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWRGXXXXXXGDVGGGGQQQRWAAEMEYESRDPSNPEPVRFTGDAVRAQDVECV 1006
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BLAST of mRNA_Ecto-sp13_S_contig6850.17809.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 7.860e-85
Identity = 230/293 (78.50%), Postives = 234/293 (79.86%), Query Frame = 1 
Query:  592 AGKPMPLARSKSGGPATPADEEEGPTMAALFGEEEDNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT--DVADGAMPSAAAAPAAPATKSYPPLRTAPEKKPAWREGERYGVVLGDSFYSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGENNPWQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWRGRGSGTVGDVGGGGQQQRWAAEMEYASRDPSNPEPVRFTGDAVRYEYLRAVADGGYFRWRTRFGRLAGMPAAGGYCRIRKAVS 1464
            AGKP P A            EEEGPTMAALFGEEEDNE     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A   DVADGAMPSAAAAPA   TKSYPPL+TAPEK PAWREGERYGVVLGDSFY S XXXXXXXXXXXXXXXXXXXXX         TGE+NP QYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRW+GRGSGT GDV GGGQQQRWAAE+EY SRDPSNPEPVRFTGDAVR   L A    G F      GRL  MPAAGGYCRIRKAVS
Sbjct:  511 AGKPTPSAXXXXXXXXXXXGEEEGPTMAALFGEEEDNEPESATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAGIDVADGAMPSAAAAPA---TKSYPPLQTAPEKMPAWREGERYGVVLGDSFYGSGXXXXXXXXXXXXXXXXXXXXXRRGLVGDDDTGESNPGQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWKGRGSGTGGDVVGGGQQQRWAAEVEYESRDPSNPEPVRFTGDAVRI--LCARGRWGTFWGAHPLGRLNEMPAAGGYCRIRKAVS 798
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6850.17809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP83_9PHAE2.640e-11671.65EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRR3_ECTSI7.860e-8578.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6850contigEcto-sp13_S_contig6850:6378..7928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1464
Hectar predicted targeting categoryother localisation
Exons2
Cds size1464
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463941.2240055-CDS-Ecto-sp13_S_contig6850:6377..64901681463941.2240055-CDS-Ecto-sp13_S_contig6850:6377..6490Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6850 6378..6490 -
1681463941.2351465-CDS-Ecto-sp13_S_contig6850:6577..79281681463941.2351465-CDS-Ecto-sp13_S_contig6850:6577..7928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6850 6578..7928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6850.17809.1prot_Ecto-sp13_S_contig6850.17809.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6850 6378..7928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6850.17809.1

>prot_Ecto-sp13_S_contig6850.17809.1 ID=prot_Ecto-sp13_S_contig6850.17809.1|Name=mRNA_Ecto-sp13_S_contig6850.17809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
PGHELDAGVVDARSSNGSLSKSATVSDAAVASISPATGERANAPAVQSPA
KQSVAGKRRTGKKPRPAEKGLKVAATALPATSRSEPAAAAPPPPGPTEGG
ARAGGGIAESARPTAGGSHAKKRPRSPPPSRRHEEEGGCPEQRAGAKRRA
AAAPQRDGRLVADLALPSARQQPPPEPRGGVVVDATATATAAARTSHAGK
PMPLARSKSGGPATPADEEEGPTMAALFGEEEDNEPESATAAAEADVEAP
GAAVLAAAAAALAVEVAAATATATASAAATDVADGAMPSAAAAPAAPATK
SYPPLRTAPEKKPAWREGERYGVVLGDSFYSSGGGGGTLAASGKRGGRRA
KGGNRRGVVDDDDTGENNPWQYVHLKYDFVPGRTNLDVPATLRQRPLTEN
EGRWRGRGSGTVGDVGGGGQQQRWAAEMEYASRDPSNPEPVRFTGDAVRY
EYLRAVADGGYFRWRTRFGRLAGMPAAGGYCRIRKAVS
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mRNA from alignment at Ecto-sp13_S_contig6850:6378..7928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6850.17809.1 ID=mRNA_Ecto-sp13_S_contig6850.17809.1|Name=mRNA_Ecto-sp13_S_contig6850.17809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6850:6378..7928- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGGACACGAACTGGATGCAGGCGTCGTCGATGCGCGTAGCAGCAATGG
GTCTCTCTCGAAATCCGCCACCGTTTCCGATGCGGCGGTCGCGTCTATCA
GTCCCGCCACTGGGGAGAGAGCGAATGCACCGGCTGTGCAGTCACCTGCG
AAGCAATCGGTGGCAGGAAAGAGGCGGACGGGGAAGAAACCGCGGCCGGC
AGAGAAGGGGTTGAAAGTCGCGGCCACGGCCCTTCCGGCAACGTCGCGAT
CAGAACCAGCAGCAGCAGCACCACCACCACCAGGCCCAACAGAAGGTGGT
GCGAGAGCTGGCGGGGGCATCGCCGAGTCTGCCCGACCGACGGCAGGCGG
CAGCCATGCCAAGAAGCGGCCCCGCTCCCCTCCTCCCTCCCGTCGACATG
AAGAAGAGGGAGGATGCCCAGAACAGCGCGCAGGAGCCAAACGCCGCGCT
GCTGCCGCCCCGCAACGTGACGGGCGACTCGTGGCCGACCTGGCGTTGCC
TTCCGCAAGACAACAACCACCGCCGGAACCGCGGGGCGGCGTCGTCGTCG
ACGCCACCGCCACCGCCACCGCGGCAGCGCGCACGTCGCATGCAGGCAAG
CCGATGCCGCTGGCGAGATCGAAAAGCGGCGGTCCGGCGACCCCGGCGGA
CGAAGAGGAGGGTCCGACGATGGCGGCTCTCTTCGGAGAAGAAGAGGACA
ACGAACCGGAGTCGGCGACAGCGGCAGCGGAAGCCGACGTCGAGGCGCCG
GGGGCAGCGGTGCTAGCGGCGGCGGCGGCAGCGCTGGCGGTAGAGGTGGC
GGCGGCGACCGCGACGGCTACGGCATCGGCAGCGGCAACTGACGTCGCAG
ACGGGGCGATGCCGTCAGCGGCGGCGGCACCGGCGGCACCGGCGACGAAG
TCGTACCCGCCGCTGCGAACGGCGCCCGAGAAAAAGCCGGCGTGGCGGGA
GGGGGAGCGTTACGGGGTCGTCTTGGGAGACTCGTTCTACAGCAGCGGCG
GTGGTGGTGGTACTCTAGCCGCGAGCGGCAAGAGAGGTGGTCGTCGTGCC
AAAGGAGGCAACAGGAGAGGTGTTGTCGACGATGACGATACGGGTGAGAA
CAACCCATGGCAGTACGTCCACCTCAAGTACGACTTCGTGCCCGGGCGGA
CGAACCTGGACGTTCCGGCCACGCTGCGGCAGCGGCCGCTGACGGAGAAC
GAAGGGAGGTGGAGAGGTCGGGGCAGCGGTACCGTCGGCGACGTCGGCGG
TGGCGGGCAGCAGCAGCGGTGGGCGGCGGAGATGGAGTACGCGAGCCGAG
ATCCCTCCAACCCGGAACCCGTTCGTTTCACCGGGGATGCTGTGAGGTAC
GGTAAAAAAGGAGGATTTGACGTGTTCGTCGACTCTTTGTCGTTTTCCCC
CCTTTTTTCGCGCTGTTTTGTTCACCTCGACCTTGTAGAATATTTACGCG
CTGTGGCGGATGGGGGATATTTTAGGTGGCGCACCCGCTTCGGGCGGTTA
GCCGGAATGCCGGCAGCCGGCGGGTATTGTCGCATCAGAAAAGCAGTATC
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6850:6378..7928-

>mRNA_Ecto-sp13_S_contig6850.17809.1 ID=mRNA_Ecto-sp13_S_contig6850.17809.1|Name=mRNA_Ecto-sp13_S_contig6850.17809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6850:6378..7928- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGGACACGAACTGGATGCAGGCGTCGTCGATGCGCGTAGCAGCAATGG
GTCTCTCTCGAAATCCGCCACCGTTTCCGATGCGGCGGTCGCGTCTATCA
GTCCCGCCACTGGGGAGAGAGCGAATGCACCGGCTGTGCAGTCACCTGCG
AAGCAATCGGTGGCAGGAAAGAGGCGGACGGGGAAGAAACCGCGGCCGGC
AGAGAAGGGGTTGAAAGTCGCGGCCACGGCCCTTCCGGCAACGTCGCGAT
CAGAACCAGCAGCAGCAGCACCACCACCACCAGGCCCAACAGAAGGTGGT
GCGAGAGCTGGCGGGGGCATCGCCGAGTCTGCCCGACCGACGGCAGGCGG
CAGCCATGCCAAGAAGCGGCCCCGCTCCCCTCCTCCCTCCCGTCGACATG
AAGAAGAGGGAGGATGCCCAGAACAGCGCGCAGGAGCCAAACGCCGCGCT
GCTGCCGCCCCGCAACGTGACGGGCGACTCGTGGCCGACCTGGCGTTGCC
TTCCGCAAGACAACAACCACCGCCGGAACCGCGGGGCGGCGTCGTCGTCG
ACGCCACCGCCACCGCCACCGCGGCAGCGCGCACGTCGCATGCAGGCAAG
CCGATGCCGCTGGCGAGATCGAAAAGCGGCGGTCCGGCGACCCCGGCGGA
CGAAGAGGAGGGTCCGACGATGGCGGCTCTCTTCGGAGAAGAAGAGGACA
ACGAACCGGAGTCGGCGACAGCGGCAGCGGAAGCCGACGTCGAGGCGCCG
GGGGCAGCGGTGCTAGCGGCGGCGGCGGCAGCGCTGGCGGTAGAGGTGGC
GGCGGCGACCGCGACGGCTACGGCATCGGCAGCGGCAACTGACGTCGCAG
ACGGGGCGATGCCGTCAGCGGCGGCGGCACCGGCGGCACCGGCGACGAAG
TCGTACCCGCCGCTGCGAACGGCGCCCGAGAAAAAGCCGGCGTGGCGGGA
GGGGGAGCGTTACGGGGTCGTCTTGGGAGACTCGTTCTACAGCAGCGGCG
GTGGTGGTGGTACTCTAGCCGCGAGCGGCAAGAGAGGTGGTCGTCGTGCC
AAAGGAGGCAACAGGAGAGGTGTTGTCGACGATGACGATACGGGTGAGAA
CAACCCATGGCAGTACGTCCACCTCAAGTACGACTTCGTGCCCGGGCGGA
CGAACCTGGACGTTCCGGCCACGCTGCGGCAGCGGCCGCTGACGGAGAAC
GAAGGGAGGTGGAGAGGTCGGGGCAGCGGTACCGTCGGCGACGTCGGCGG
TGGCGGGCAGCAGCAGCGGTGGGCGGCGGAGATGGAGTACGCGAGCCGAG
ATCCCTCCAACCCGGAACCCGTTCGTTTCACCGGGGATGCTGTGAGGTAC
GAATATTTACGCGCTGTGGCGGATGGGGGATATTTTAGGTGGCGCACCCG
CTTCGGGCGGTTAGCCGGAATGCCGGCAGCCGGCGGGTATTGTCGCATCA
GAAAAGCAGTATCC
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