mRNA_Ecto-sp13_S_contig12099.1781.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12099.1781.1
Unique NamemRNA_Ecto-sp13_S_contig12099.1781.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: A0A6H5JPG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPG3_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 8.300e-58
Identity = 95/108 (87.96%), Postives = 102/108 (94.44%), Query Frame = 1
Query:    1 GHLFSTQTLISQRRGNVAPIGGWGAGLHLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRGPTNG 324
            G   +  ++ ++RRGNVAPIGGWGAGLHLLAPS+DGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDL+VGTMSGEVVALSANVPYHPLNAWTSQVRGPTNG
Sbjct:  537 GEAAADASIQAKRRGNVAPIGGWGAGLHLLAPSDDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLIVGTMSGEVVALSANVPYHPLNAWTSQVRGPTNG 644          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: A0A0S4JVN8_BODSA (Membrane-associated protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JVN8_BODSA)

HSP 1 Score: 103 bits (257), Expect = 1.640e-23
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 GHLFSTQTLISQRRGNVAPIGGWGAGLHLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRGPTNG 324
            G + +   L++    N   I     GLH++ PS DGH+Y+I G T C  +ID+GE+  SMVLADD+  +G LDL+V T+SG V+A S + P+HPL  W S+++    G
Sbjct:  604 GPVIAPSLLLNLNNSNPPAIPETSKGLHIIVPSHDGHLYIISGPTGCYERIDIGEKSSSMVLADDLTNNGMLDLVVSTLSGSVLAYSTDTPFHPLKQWGSRIKALNGG 711          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: A0A7S4C7U7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C7U7_9EUGL)

HSP 1 Score: 99.8 bits (247), Expect = 3.680e-22
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   76 GLHLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRG 312
            GLH++  S DGH+Y+I+G +AC++KID GE   SMVLADD+ G+G +DL+V TM+G V  L+    +HPL  WTSQ +G
Sbjct:  701 GLHIVVMSHDGHMYIIDGKSACIDKIDFGENSYSMVLADDLSGNGYMDLIVSTMNGNVYLLNTETKFHPLKTWTSQTQG 779          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: L1I970_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I970_GUITC)

HSP 1 Score: 99.4 bits (246), Expect = 5.080e-22
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   82 HLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRGPTN 321
            H++ PS DG +Y++ GAT C  K+D+GE   SMVLADD+ G+G +DLLV TM+G V+ L  +V YHP+ AWTS+ +G  N
Sbjct:  986 HIIVPSHDGFLYIVNGATGCSFKVDVGENSYSMVLADDITGNGKMDLLVTTMNGNVICLGTDVDYHPMKAWTSKEQGNNN 1065          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: A0A7S1EHG6_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EHG6_HEMAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.240e-21
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   82 HLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRGPTN 321
            H++ P+ DG +YVI+G T C  K D+GE+  +MVLADDV G+G +DLLV TM+G V+AL  +V YHP+ AWTS+ +G  N
Sbjct:  439 HVVVPAHDGFLYVIDGKTGCTFKYDVGEKSYAMVLADDVTGNGFMDLLVSTMNGNVIALGTDVQYHPMKAWTSREQGNNN 518          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: G0TZB7_TRYVY (Putative FG-GAP repeat protein (Putative intergrin alpha chain protein) n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0TZB7_TRYVY)

HSP 1 Score: 97.4 bits (241), Expect = 2.360e-21
Identity = 43/90 (47.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   46 NVAPIGGWGA--GLHLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVR 309
            N   +G  G+  GLH++ PS DG +Y++ GAT CV+ ID+GE+  +MVLADDV G+G LDL+V T++G ++ L  +  +HPL AW S+V+
Sbjct:  626 NDTVVGAHGSERGLHIVIPSHDGVLYIVSGATGCVDGIDIGEKASAMVLADDVTGNGKLDLVVSTLAGSIMVLETSATFHPLKAWPSRVK 715          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: A0A422NPR5_9TRYP (Putative FG-GAP repeat protein n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A422NPR5_9TRYP)

HSP 1 Score: 97.1 bits (240), Expect = 3.220e-21
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   22 TLISQRRGNVAPIGGWGAGLHLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRGPTNG 324
            TL SQ+RG          GLHL+ PS DG +Y++ G T CV+ ID+ E+  +MVLADD+ G+G LDL+V T+SG V+       +HPL AWTS+V+  TNG
Sbjct:  606 TLPSQQRGPE--------GLHLVVPSHDGVLYIVSGTTGCVDGIDINEKSSTMVLADDLTGNGKLDLVVSTLSGSVMVFETPATFHPLKAWTSRVKS-TNG 697          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: A0A150FXB0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FXB0_GONPE)

HSP 1 Score: 95.1 bits (235), Expect = 4.510e-21
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   70 GAGLHLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRGPTNG 324
            G+GL ++ P+ DG +YVI+G   C +  D+GE   + VL DD+DGDG L+LL  TMSG V A     PYHPL  WTSQ  GP  G
Sbjct:  109 GSGLQVVVPAFDGFLYVIDGLQGCADVADMGETSYAAVLVDDLDGDGALELLATTMSGNVYAWETGAPYHPLKTWTSQTLGPNGG 193          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: UPI0004F45326 (putative FG-GAP repeat protein, putative,intergrin alpha chain protein n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F45326)

HSP 1 Score: 96.3 bits (238), Expect = 6.000e-21
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   76 GLHLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRGPTNG 324
            GLH++ PS DG +YV+ G T CV+ ID+GE+  +MVLADD+ G+G LDL+V T+SG V+       YHPL AW S+V+  TNG
Sbjct:  631 GLHIVVPSHDGVLYVVSGTTGCVDGIDMGEKSSAMVLADDMAGNGKLDLIVSTLSGSVMVFETPATYHPLKAWGSRVKS-TNG 712          
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Match: A0A836B0M0_9CHLO (Uncharacterized protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A836B0M0_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 8.270e-21
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   70 GAGLHLLAPSEDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTSQVRGP 315
            GAGL ++ P+ DG +YVI+G   C +  DLGE   + VLADD+DGDG L+L+  TM+G V A     PYHPL  WTSQV GP
Sbjct:  777 GAGLQVVVPAFDGFLYVIDGLQGCADVADLGETSYAAVLADDIDGDGLLELVATTMNGNVYAFETGAPYHPLATWTSQVLGP 858          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12099.1781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPG3_9PHAE8.300e-5887.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0S4JVN8_BODSA1.640e-2342.59Membrane-associated protein, putative n=1 Tax=Bodo... [more]
A0A7S4C7U7_9EUGL3.680e-2253.16Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
L1I970_GUITC5.080e-2252.50Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S1EHG6_HEMAN1.240e-2153.75Hypothetical protein n=3 Tax=Hemiselmis andersenii... [more]
G0TZB7_TRYVY2.360e-2147.78Putative FG-GAP repeat protein (Putative intergrin... [more]
A0A422NPR5_9TRYP3.220e-2148.51Putative FG-GAP repeat protein n=1 Tax=Trypanosoma... [more]
A0A150FXB0_GONPE4.510e-2150.59Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
UPI0004F453266.000e-2153.01putative FG-GAP repeat protein, putative,intergrin... [more]
A0A836B0M0_9CHLO8.270e-2153.66Uncharacterized protein n=2 Tax=Chlamydomonas TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12099contigEcto-sp13_S_contig12099:794..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score199.9
Seed ortholog evalue6e-49
Seed eggNOG ortholog2880.D7FJ73
Model size324
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0007275,GO:0008150,GO:0009555,GO:0009653,GO:0009987,GO:0010208,GO:0010584,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0022607,GO:0030198,GO:0032501,GO:0032502,GO:0032989,GO:0043062,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046872,GO:0048229,GO:0048646,GO:0048856,GO:0048869,GO:0071840,GO:0085029
Exons2
EggNOG OGs2CMU7@1,2QRZ6@2759
Cds size324
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462642.7000318-CDS-Ecto-sp13_S_contig12099:793..10391681462642.7000318-CDS-Ecto-sp13_S_contig12099:793..1039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12099 794..1039 +
1681462642.7120519-CDS-Ecto-sp13_S_contig12099:1234..13121681462642.7120519-CDS-Ecto-sp13_S_contig12099:1234..1312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12099 1235..1312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12099.1781.1prot_Ecto-sp13_S_contig12099.1781.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12099 794..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12099.1781.1

>prot_Ecto-sp13_S_contig12099.1781.1 ID=prot_Ecto-sp13_S_contig12099.1781.1|Name=mRNA_Ecto-sp13_S_contig12099.1781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
GHLFSTQTLISQRRGNVAPIGGWGAGLHLLAPSEDGHVYVIEGATACVNK
IDLGERVRSMVLADDVDGDGTLDLLVGTMSGEVVALSANVPYHPLNAWTS
QVRGPTNG
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mRNA from alignment at Ecto-sp13_S_contig12099:794..1312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12099.1781.1 ID=mRNA_Ecto-sp13_S_contig12099.1781.1|Name=mRNA_Ecto-sp13_S_contig12099.1781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12099:794..1312+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCATCTGTTTTCAACCCAAACCTTGATTTCGCAGCGAAGAGGAAACGT TGCGCCAATCGGGGGATGGGGTGCGGGTTTGCACCTCCTTGCTCCGTCGG AGGACGGCCACGTGTACGTCATCGAGGGGGCGACGGCATGCGTGAACAAG ATCGACCTAGGGGAGCGCGTGCGGAGCATGGTTCTGGCGGATGATGTCGA CGGCGACGGGACCCTTGACCTTCTCGTGGGCACCATGAGCGGCGAAGTAA GGCGTAGTGTTGCTGTTGTTGTTGTTGTGGTCGTCTCCGTTATTGATGTT GTGCTGTTGCTGCTGCTGCTGCTGATACTGGCACGCCGTGTGCGGCAAAG CGACGCGTGGCTCTTCGCAGGTGTTATGATGATAACAGATTCGCCTGTCC TCCCCTCGTATCGCTTGCTTCGTGTGGTGAAATTTTTGTAGGTGGTGGCG CTGTCGGCGAACGTGCCGTACCACCCGCTGAACGCCTGGACTTCTCAAGT GCGGGGCCCCACCAATGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12099:794..1312+

>mRNA_Ecto-sp13_S_contig12099.1781.1 ID=mRNA_Ecto-sp13_S_contig12099.1781.1|Name=mRNA_Ecto-sp13_S_contig12099.1781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12099:794..1312+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCATCTGTTTTCAACCCAAACCTTGATTTCGCAGCGAAGAGGAAACGT
TGCGCCAATCGGGGGATGGGGTGCGGGTTTGCACCTCCTTGCTCCGTCGG
AGGACGGCCACGTGTACGTCATCGAGGGGGCGACGGCATGCGTGAACAAG
ATCGACCTAGGGGAGCGCGTGCGGAGCATGGTTCTGGCGGATGATGTCGA
CGGCGACGGGACCCTTGACCTTCTCGTGGGCACCATGAGCGGCGAAGTGG
TGGCGCTGTCGGCGAACGTGCCGTACCACCCGCTGAACGCCTGGACTTCT
CAAGTGCGGGGCCCCACCAATGGT
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