mRNA_Ecto-sp13_S_contig6843.17802.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6843.17802.1
Unique NamemRNA_Ecto-sp13_S_contig6843.17802.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6843.17802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6843contigEcto-sp13_S_contig6843:1157..3391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size461
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463940.5773096-UTR-Ecto-sp13_S_contig6843:1156..13801681463940.5773096-UTR-Ecto-sp13_S_contig6843:1156..1380Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6843 1157..1380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463940.5865564-CDS-Ecto-sp13_S_contig6843:1380..15871681463940.5865564-CDS-Ecto-sp13_S_contig6843:1380..1587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6843 1381..1587 +
1681463940.5952628-CDS-Ecto-sp13_S_contig6843:3361..33911681463940.5952628-CDS-Ecto-sp13_S_contig6843:3361..3391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6843 3362..3391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6843.17802.1prot_Ecto-sp13_S_contig6843.17802.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6843 1381..3391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6843.17802.1

>prot_Ecto-sp13_S_contig6843.17802.1 ID=prot_Ecto-sp13_S_contig6843.17802.1|Name=mRNA_Ecto-sp13_S_contig6843.17802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MIDENGINESYYGTLHHEQLHYRPTKGYRVQDVVICSLQARRWKKQQQYN
RWQQKVQHGCRRGRHSNGRSRPDCQSMID
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mRNA from alignment at Ecto-sp13_S_contig6843:1157..3391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6843.17802.1 ID=mRNA_Ecto-sp13_S_contig6843.17802.1|Name=mRNA_Ecto-sp13_S_contig6843.17802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6843:1157..3391+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGGCACTGTTTTCCCACTTGAGAATCGGGGGTGAAAAGGGCAAACGGT
ATGGGTGGGTAGTGGGTGATTGAGTTTTGTGTTGATAAGCGCAGAGAAAA
GCCGATGGTACTGCACATGTCCACGTGAAAAGGCTTTAAGTATGTAGGGC
ACAGGCGCACTCAACATTAGATAGGGAACAGAAGTGGTGCCACTTCATTC
ACGGGGGCTCAAACGTGCTTAAAGATGATCGACGAGAACGGGATAAACGA
ATCGTACTACGGAACCTTGCACCATGAACAACTGCACTACCGTCCGACAA
AAGGGTACCGCGTGCAGGACGTTGTGATCTGCTCGCTGCAAGCACGAAGG
TGGAAGAAGCAGCAGCAGTATAACCGGTGGCAGCAGAAAGTACAACACGG
TTGCAGAAGGGGCAGGCACAGCAATGGACGGGTGGGTAAATGAGAACTTC
ATGAAGGCAGTACTAACGTCCTCTTCGCCGGCGAAGGCGGACGTTGATAC
GTACGTAGACCCTCGTCGTCATTGGTGAGGAGGTGGTCACCGATCTTCAG
ACACCAGTTAGCCCACTCGGGGGGGGGGGGAGTTGGGAGGTTGCCGCTGC
CTGTTGCCGTGAGAAAACGTGGCGGGAACGGAGAACACATTTAGCACATT
CTCCCCGCAGGAGGTACTGCTGTGGTATGTATTTTATCTGCAAAATAAAA
ACTCAGAAGGGATGGGGTATGTCGACACACAAAACCGGTGGAGAGCAAAG
TACACAGAACGGAAATGGCACACAGGAGGAGTTGCGGATGTCTTGAGCCA
CGTCAACCTTCACGAGGTACTGCTGTATGTTATCTGCAAACACAAGTACT
AAGCAGGGATATAGCATATGTCGGCACGCACTGACCGATGATGAATGAAG
GCTTGAGCACAAAAGTAGCAAGGCTTGTCGGCGTATCGGACAGAGTCAGA
GTCCAGACCAGGCGCAGTTGCCGGACAGGAAGCGGTGGCAGACGGGGTAC
TCCTGTGTGCAACAAATACAGGAGGAGGAGGGATTACGGGTATTAGGGAC
GTATAAATGTGTATCATCAATTCATCACAGATGATGTGCATAGCATGCAT
GTTGTGCATGTGGTGGTGCATGTGGTGCGGTTATGGAAAGCGTGGTGGCG
ACCAAGGAAGTAATGCGCACGATAAAAAAAGGGGTTGTTGTGTTCGACGG
GGCGACCTCGCATCGCTGGGCGTCAACGGGTTTTTGCGCAATAAAGATTT
GTCTATTTTGAGCAAACACCAAACAACGGATGAAAGAGACGTTTAACGTG
CCCCAGAACGGTCACGTTGGTAGTCATCCGTACGTTACGTTCCGCGGTGG
ATCTTGGTGGTGATCGTGTACTTTTCGGGTTATTTACGGACAGTCCCCTG
ATAGGTGATCTCGAAATTTGAATCTCTTTCCGGTTGTGTTATCTTGTTCA
TGAGGTGTTGTGTTTTTGATAAAGCTTACATGTGATGATATTACTCTGCT
ATGCGAAATATCCAAGTTGGTTACTCATGTCGGTATAATGACGGAGTTTT
TTTTTTTTTTTTGAGAAAAACGGGGTTGTGTTGTACAGGGCGACGTCGCA
TCGCCGGGCGTCAACGAGTTTTCGCGCAAAAACATTTGTCGATTTGGAGC
GAACACCAGCAATGGATGAAAGAGACGTCTCACGTGCCCAAGAACGGTTA
TTACGTCGGTGTCATTGATACGTTTTGCAGTGGCTCTCGATGTCGACCGT
GGCGACGTCGGTCAGATGTACGTTTTTCACAGCACGTACACACGACGGAT
GCTTCCGTGATGATACTGCGCTGCCGTGCTAAACAATATGCATTGTTGCG
TGTGGTGTGTTATCATGATCGACATCAAGAGGCTTGGCCCCTACGAGTAG
CCCCTCAATGTGTCATTTTACTAACTTCACGCTTGCTTTGTTGATGTGTA
AAATGCTCGTGTGTCTACTCTGCGGCCGGATGACACTGTCACGGCCGATG
CACCAGCGGTACTTCGGTTTTTGGTTGTCGTGCCCTCATGTGTGTCACGT
CCAGGCGTTAAAATAGTTAATAGGGTACGGTGAATTTTTTTTTGCGGCAT
CCTTCCAGCAGCACCCCACAGAAAAATTAGTCTCGCCGGGAGCCTGACCT
ACTATTCTCTACACCCCCGCCCCTCCCCTCTCGATGTACCCCTCTGTTTT
CACAGTCGCGCCCGGACTGCCAGAGCATGATCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6843:1157..3391+

>mRNA_Ecto-sp13_S_contig6843.17802.1 ID=mRNA_Ecto-sp13_S_contig6843.17802.1|Name=mRNA_Ecto-sp13_S_contig6843.17802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6843:1157..3391+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGACGAGAACGGGATAAACGAATCGTACTACGGAACCTTGCACCA
TGAACAACTGCACTACCGTCCGACAAAAGGGTACCGCGTGCAGGACGTTG
TGATCTGCTCGCTGCAAGCACGAAGGTGGAAGAAGCAGCAGCAGTATAAC
CGGTGGCAGCAGAAAGTACAACACGGTTGCAGAAGGGGCAGGCACAGCAA
TGGACGGTCGCGCCCGGACTGCCAGAGCATGATCGAC
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