mRNA_Ecto-sp13_S_contig68285.17782.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68285.17782.1
Unique NamemRNA_Ecto-sp13_S_contig68285.17782.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68285.17782.1 vs. uniprot
Match: D7G3E9_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E9_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 5.170e-53
Identity = 110/157 (70.06%), Postives = 113/157 (71.97%), Query Frame = 1 
Query:    1 MATAVKTATGITAAVLLRGAGRRPLLRSVSTAAPVFTSSRLLPPQPPPRPRLQGTETASARGRFNPLAVARSGVTKGVTATTLSGGPTTRRCLSSGASSEGGDGGEQARRGEAAETGPAIPLGSKLAFKTIVDGKPMPPDEFEGKAVLVVNTASLCG 471
            MATA+KTA G TAAVLLRGAGRRPLLR VS                  RP LQGTETASARGRFNP AVAR GVTK V + TLS   TTRR L         DGGEQA RG AAETG AIPLGSKLAFK IVDGKPMPPD+FEGKAVLVVNTASLCG
Sbjct:    1 MATAMKTAAGTTAAVLLRGAGRRPLLRIVSXXXXXXXXXXXXXXXX--RPPLQGTETASARGRFNPSAVARGGVTKVVASVTLSRCSTTRRRLXXXXXXXXXDGGEQAGRGAAAETGTAIPLGSKLAFKAIVDGKPMPPDDFEGKAVLVVNTASLCG 155
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BLAST of mRNA_Ecto-sp13_S_contig68285.17782.1 vs. uniprot
Match: UPI00034D06E7 (glutathione peroxidase n=1 Tax=Azospirillum sp. B4 TaxID=95605 RepID=UPI00034D06E7)

HSP 1 Score: 53.9 bits (128), Expect = 7.650e-6
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:  322 ARRGEAAETGPAIPLGSKLAFKTI-VDGKPMPPDEFEGKAVLVVNTASLCG 471
            AR G+AA   P+   GS   +K I +DG P+P  +F+GKA+LVVNTASLCG
Sbjct:   29 ARHGDAAAPLPSSAAGSAYDYKFISIDGDPLPLSQFKGKAILVVNTASLCG 79
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BLAST of mRNA_Ecto-sp13_S_contig68285.17782.1 vs. uniprot
Match: A0A248JRI6_9PROT (Glutathione peroxidase n=5 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A248JRI6_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 9.970e-5
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  322 ARRGEAAETGPAIPLGSKLAFK-TIVDGKPMPPDEFEGKAVLVVNTASLCG 471
            AR  +AA   P+   GS   +K T +DG P+P  +F+GKA+LVVNTASLCG
Sbjct:   28 ARHVDAATPLPSSAAGSAYDYKFTSIDGDPLPLSQFKGKAILVVNTASLCG 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68285.17782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3E9_ECTSI5.170e-5370.06Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
UPI00034D06E77.650e-654.90glutathione peroxidase n=1 Tax=Azospirillum sp. B4... [more]
A0A248JRI6_9PROT9.970e-552.94Glutathione peroxidase n=5 Tax=Nitrospirillum amaz... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68285contigEcto-sp13_S_contig68285:129..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size474
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionGlutathione peroxidase
Ec32 orthologEc-00_006580.1
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463938.3818805-CDS-Ecto-sp13_S_contig68285:128..6021681463938.3818805-CDS-Ecto-sp13_S_contig68285:128..602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68285 129..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68285.17782.1prot_Ecto-sp13_S_contig68285.17782.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68285 129..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68285.17782.1

>prot_Ecto-sp13_S_contig68285.17782.1 ID=prot_Ecto-sp13_S_contig68285.17782.1|Name=mRNA_Ecto-sp13_S_contig68285.17782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MATAVKTATGITAAVLLRGAGRRPLLRSVSTAAPVFTSSRLLPPQPPPRP
RLQGTETASARGRFNPLAVARSGVTKGVTATTLSGGPTTRRCLSSGASSE
GGDGGEQARRGEAAETGPAIPLGSKLAFKTIVDGKPMPPDEFEGKAVLVV
NTASLCG*
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mRNA from alignment at Ecto-sp13_S_contig68285:129..602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68285.17782.1 ID=mRNA_Ecto-sp13_S_contig68285.17782.1|Name=mRNA_Ecto-sp13_S_contig68285.17782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68285:129..602- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACAGCCGTGAAAACCGCAACAGGCATTACTGCAGCAGTGCTCCT
CCGGGGTGCAGGGAGGCGACCACTCCTTCGCAGCGTCTCGACAGCGGCGC
CGGTGTTCACATCGTCCCGGCTGCTACCGCCGCAGCCGCCGCCTCGGCCA
CGGCTGCAGGGGACGGAGACGGCATCGGCACGGGGGCGCTTCAACCCCTT
AGCCGTGGCGCGCAGTGGAGTGACCAAGGGTGTTACGGCTACGACACTCA
GTGGGGGCCCGACGACACGGCGATGCCTCAGCTCGGGAGCGTCGTCGGAG
GGGGGGGACGGGGGAGAGCAGGCGCGGAGAGGAGAGGCCGCGGAGACGGG
GCCAGCGATACCGTTAGGGTCGAAGCTGGCGTTCAAAACAATTGTAGACG
GCAAGCCGATGCCCCCCGACGAATTCGAAGGCAAGGCGGTTCTCGTCGTC
AACACGGCCTCTCTCTGTGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68285:129..602-

>mRNA_Ecto-sp13_S_contig68285.17782.1 ID=mRNA_Ecto-sp13_S_contig68285.17782.1|Name=mRNA_Ecto-sp13_S_contig68285.17782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68285:129..602- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACAGCCGTGAAAACCGCAACAGGCATTACTGCAGCAGTGCTCCT
CCGGGGTGCAGGGAGGCGACCACTCCTTCGCAGCGTCTCGACAGCGGCGC
CGGTGTTCACATCGTCCCGGCTGCTACCGCCGCAGCCGCCGCCTCGGCCA
CGGCTGCAGGGGACGGAGACGGCATCGGCACGGGGGCGCTTCAACCCCTT
AGCCGTGGCGCGCAGTGGAGTGACCAAGGGTGTTACGGCTACGACACTCA
GTGGGGGCCCGACGACACGGCGATGCCTCAGCTCGGGAGCGTCGTCGGAG
GGGGGGGACGGGGGAGAGCAGGCGCGGAGAGGAGAGGCCGCGGAGACGGG
GCCAGCGATACCGTTAGGGTCGAAGCTGGCGTTCAAAACAATTGTAGACG
GCAAGCCGATGCCCCCCGACGAATTCGAAGGCAAGGCGGTTCTCGTCGTC
AACACGGCCTCTCTCTGTGGGTAA
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