mRNA_Ecto-sp13_S_contig6823.17775.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6823.17775.1
Unique NamemRNA_Ecto-sp13_S_contig6823.17775.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6823.17775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6823contigEcto-sp13_S_contig6823:2..3464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3157
Hectar predicted targeting categoryother localisation
Exons2
Cds size2697
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463937.858421-UTR-Ecto-sp13_S_contig6823:1..2141681463937.858421-UTR-Ecto-sp13_S_contig6823:1..214Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6823 2..214 -
1681463937.8867216-UTR-Ecto-sp13_S_contig6823:3217..34641681463937.8867216-UTR-Ecto-sp13_S_contig6823:3217..3464Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6823 3218..3464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463937.8689435-CDS-Ecto-sp13_S_contig6823:214..27601681463937.8689435-CDS-Ecto-sp13_S_contig6823:214..2760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6823 215..2760 -
1681463937.8775704-CDS-Ecto-sp13_S_contig6823:3066..32171681463937.8775704-CDS-Ecto-sp13_S_contig6823:3066..3217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6823 3067..3217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6823.17775.1prot_Ecto-sp13_S_contig6823.17775.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6823 215..3217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6823.17775.1

>prot_Ecto-sp13_S_contig6823.17775.1 ID=prot_Ecto-sp13_S_contig6823.17775.1|Name=mRNA_Ecto-sp13_S_contig6823.17775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=899bp
MMCIKVVLALRIYINNISNDSLFWNSVQTGCHAGETRPKASRGLERLVDT
PAGARYAQLRPSTPPMAETVGVAHQGSTTQQQIVNSPPVSPGMPVGGANA
QDRNKTGVGDSEDPVRDRDRTPSSAGVGGAPGGGVTGEGVSMGAGPLFAP
FSRPNSSGIPAGSGVAGRGRAVVGGAQPQSTPHRTAVTNVGLPSAALGSS
GASSRNAPGLGRGQAPTSSPKQLSRLVRRSGPQPVGPQPVGMVSMYGDAA
VLPVQRVSTDEEAQTQWRAKHPAEAMSVPLAVLVLIVNIVAGASVFSRDN
HSLELEVPVCVLILFATLFAPIYTHMYQQRPWYGDWSSTTHLADLVVVAS
DLTARLGCGNALLLRFYPSRMRGEIGERITMAATYCKLWNWIVGHRQLGH
DLSREFVQKSIGWLSASGCMLVDTDGRVSPNRDLTWLVVTLNRCLRENKL
KETDEEEVKRGLAGIAPLGELVLPPVLAAKTGPKVAKGGIREVWMKEAGV
YWRISDSSIRIAWSGDNKGIGYVGGILVRVSQSDASVGWRVAERDGKALL
RGDLTLPGVNLVASIVGYANTMFGVAFLIGRELSRGYWVVFANTLGEVVS
ILIVAGPSLGLGDIRAWWVMADPTNGLRALTRSSRGNCMGILVVEALSSL
TGAVIAALGSGSDYVWAAAGAISGVITIIVGFTPGAIAKASIACLSVFVV
GVAGEIALLAITQGSDWLTWCVVACSTAEVILLGFLLLDLVRASRTKRRV
LGRENNRAERPTNAIGERPTLKGGQYDSLGIGVGTPEPVLSVGGIRGSSK
WPPSTIIRAGGFRHGIRSFHCDDVPQNIADISDGWMVLRETRARPAEQSG
STNAHAFGFEFWGFLVKLANGGAHPILSTHAFPDAILSPRGRDQSMGV*
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mRNA from alignment at Ecto-sp13_S_contig6823:2..3464-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6823.17775.1 ID=mRNA_Ecto-sp13_S_contig6823.17775.1|Name=mRNA_Ecto-sp13_S_contig6823.17775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3463bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6823:2..3464- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGAGTCCTTCGGGACTATTGCGAGTCTCGGAACTCCTTTTTTCTGTC
GTTACCGTTCGACCAACTAAGCGCCAATTCAAGCCGTCTTCTCTAATCGC
AGTGTATTGTACTTCCCGTCATTTAGTGAGCCACTGCATACTGTTTCAAC
ACAGCAGTGACAATACCAGGAACACCACACAAAGGTTACAACCCATCTAT
GTTTTAGTTCGGGCTCCCCAGAGCACTCATCAAGGTGGAACCAAAGAATG
ATGTGCATCAAAGTGGTGCTTGCTTTGAGAATATACATCAACAACATCTC
CAACGATTCATTGTTTTGGAATTCCGTTCAGACAGGTTGCCACGCTGGAG
AAACGCGCCCGAAAGCCTCACGCGGATTAGAACGGCTGGTGGATACTCGT
GAGTGCTATTTCTATGCTTGACCACTATCCATCACCAGATTCCGAGCGCA
TAGATGAGAGTAATAGCCGAGCGTCGCATTTGTTTCTGACGCTGTTTCTG
GTGTTGTCGTCTTCGTGGCCGCGTCTGGGCTTTCGTCATTCAGCTCAGTT
TTCATCAATCAAGCAAACGTAGTATCGATCTAGTGCAGCGTGTTTTGTGC
CTCTCTGCATTGTTTTCCCGTTGCTAGTGGGTTCAATTCTCGGTATTGAC
TAACATCATTTTCTCACAGCTCGCCTCGCTCAAATTCGACCGTATTCAAC
GCAGCGGCTGGGGCGAGATACGCACAACTGAGACCTAGTACGCCACCGAT
GGCCGAAACGGTTGGAGTGGCTCATCAGGGCTCCACTACGCAACAGCAGA
TAGTGAACAGTCCACCCGTCAGTCCTGGAATGCCGGTCGGTGGTGCCAAC
GCCCAAGACCGAAACAAAACTGGGGTTGGCGATTCCGAGGATCCTGTACG
TGACCGGGACCGTACCCCTTCGTCCGCTGGGGTTGGGGGAGCCCCAGGAG
GGGGAGTGACCGGGGAAGGTGTTAGCATGGGCGCCGGGCCTTTGTTTGCG
CCGTTCTCTCGCCCGAACTCCAGCGGGATCCCCGCCGGGTCCGGAGTGGC
CGGTCGCGGGCGGGCCGTGGTTGGGGGCGCACAGCCGCAGTCGACGCCGC
ACCGAACGGCTGTGACAAATGTTGGGCTGCCGTCTGCTGCGTTGGGGAGT
TCGGGGGCATCTTCAAGGAACGCGCCTGGGCTTGGACGAGGGCAGGCCCC
TACGTCCTCGCCCAAACAGCTAAGCCGGCTTGTCAGACGGAGTGGCCCGC
AGCCCGTTGGCCCGCAGCCCGTTGGGATGGTTTCAATGTACGGCGACGCG
GCAGTTCTACCAGTTCAAAGGGTTTCGACCGACGAAGAGGCGCAAACGCA
GTGGCGAGCGAAACACCCCGCTGAGGCTATGTCCGTCCCTCTCGCAGTGT
TGGTGCTGATAGTCAATATCGTGGCGGGTGCGTCGGTCTTCTCTCGCGAC
AACCATTCATTGGAACTAGAGGTGCCTGTGTGTGTATTGATATTATTTGC
TACACTCTTTGCCCCGATATACACTCACATGTACCAACAGCGCCCGTGGT
ACGGTGACTGGTCTTCAACGACACACTTGGCGGATCTGGTGGTCGTTGCT
AGCGACCTGACGGCCCGGCTGGGCTGTGGTAACGCGCTCCTCCTTCGATT
TTATCCTTCTAGGATGAGGGGCGAGATCGGCGAGAGGATCACCATGGCCG
CTACATACTGTAAACTGTGGAACTGGATCGTAGGGCATCGTCAGCTGGGG
CACGACCTGAGCCGAGAATTTGTGCAGAAGTCGATAGGGTGGCTCAGCGC
ATCAGGTTGCATGTTGGTGGACACTGATGGCAGGGTATCGCCCAACCGGG
ACCTCACATGGTTGGTGGTGACGCTGAATCGCTGCCTGAGAGAGAACAAG
CTGAAGGAAACAGACGAGGAGGAGGTGAAGCGTGGTTTGGCCGGAATTGC
CCCTCTGGGTGAGCTGGTCCTTCCGCCCGTCCTGGCGGCGAAGACAGGGC
CTAAGGTGGCGAAAGGTGGCATCCGGGAGGTCTGGATGAAAGAGGCTGGG
GTGTACTGGCGTATCTCTGACTCGTCGATACGAATTGCTTGGTCTGGAGA
TAACAAGGGGATCGGGTACGTGGGCGGAATCCTAGTGAGGGTCTCTCAAT
CAGACGCATCTGTCGGTTGGCGTGTGGCGGAGCGGGACGGTAAAGCACTT
CTGAGGGGGGATCTGACACTTCCTGGTGTCAACCTTGTGGCCTCAATCGT
CGGATATGCCAACACAATGTTCGGAGTCGCTTTCCTCATTGGCCGGGAAC
TGTCTCGAGGATACTGGGTGGTCTTCGCGAACACGCTAGGGGAAGTAGTC
TCAATACTGATAGTCGCCGGGCCTTCGCTCGGACTGGGTGACATACGGGC
GTGGTGGGTGATGGCAGACCCCACCAATGGACTTCGCGCTCTGACCAGAT
CAAGTAGGGGCAACTGCATGGGTATCCTTGTAGTCGAAGCTCTGTCATCC
CTAACGGGAGCAGTTATCGCCGCACTGGGGTCGGGCTCGGATTATGTGTG
GGCGGCGGCGGGTGCCATCTCCGGGGTAATAACAATCATCGTCGGGTTTA
CCCCAGGAGCCATCGCTAAAGCATCTATCGCCTGTCTGTCTGTGTTTGTC
GTCGGCGTGGCGGGTGAAATAGCATTGCTCGCAATTACCCAGGGATCGGA
TTGGCTGACTTGGTGCGTGGTTGCGTGCTCGACGGCCGAGGTCATACTAC
TTGGCTTCCTCTTGCTCGACCTAGTCCGGGCGTCAAGGACGAAGAGGCGC
GTGCTAGGGAGAGAAAACAACAGGGCCGAGAGGCCAACGAATGCAATCGG
CGAGCGTCCCACGCTGAAAGGGGGGCAGTATGATTCCCTTGGAATAGGGG
TCGGAACGCCTGAGCCCGTTCTTTCAGTCGGGGGCATACGGGGCTCATCT
AAATGGCCACCTTCTACGATCATACGAGCCGGGGGTTTTAGGCACGGTAT
TCGGAGTTTTCACTGTGATGACGTTCCGCAGAACATCGCCGACATTAGCG
ACGGCTGGATGGTCCTCAGAGAGACGCGCGCCCGCCCGGCCGAACAGTCT
GGTTCAACAAATGCCCATGCGTTTGGCTTTGAGTTTTGGGGCTTCCTGGT
GAAACTAGCAAACGGGGGGGCGCACCCGATACTGAGCACTCACGCCTTCC
CGGACGCCATTCTATCACCCAGAGGAAGAGACCAGAGTATGGGTGTGTGA
CCGCTACCGGCGTGGAGCGCTTCATGTACTTCTCTAGAGATAACTCGGTG
ACTATGGAAGTGGGGAAACTGAGGGGTAGGGCCCTCGACAGGAAAGGAGC
CGGGAAGTCGCCCCCTTCCGAGAAGGGTGAAGGCGGAACGCTACCGTCCC
CCTGAGTACCTATGGCAGGAGAAGGGGGCCTTTGCCCGAGGGAACGGGGT
CTTTGCGATCTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6823:2..3464-

>mRNA_Ecto-sp13_S_contig6823.17775.1 ID=mRNA_Ecto-sp13_S_contig6823.17775.1|Name=mRNA_Ecto-sp13_S_contig6823.17775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6823:2..3464- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTGCATCAAAGTGGTGCTTGCTTTGAGAATATACATCAACAACAT
CTCCAACGATTCATTGTTTTGGAATTCCGTTCAGACAGGTTGCCACGCTG
GAGAAACGCGCCCGAAAGCCTCACGCGGATTAGAACGGCTGGTGGATACT
CCGGCTGGGGCGAGATACGCACAACTGAGACCTAGTACGCCACCGATGGC
CGAAACGGTTGGAGTGGCTCATCAGGGCTCCACTACGCAACAGCAGATAG
TGAACAGTCCACCCGTCAGTCCTGGAATGCCGGTCGGTGGTGCCAACGCC
CAAGACCGAAACAAAACTGGGGTTGGCGATTCCGAGGATCCTGTACGTGA
CCGGGACCGTACCCCTTCGTCCGCTGGGGTTGGGGGAGCCCCAGGAGGGG
GAGTGACCGGGGAAGGTGTTAGCATGGGCGCCGGGCCTTTGTTTGCGCCG
TTCTCTCGCCCGAACTCCAGCGGGATCCCCGCCGGGTCCGGAGTGGCCGG
TCGCGGGCGGGCCGTGGTTGGGGGCGCACAGCCGCAGTCGACGCCGCACC
GAACGGCTGTGACAAATGTTGGGCTGCCGTCTGCTGCGTTGGGGAGTTCG
GGGGCATCTTCAAGGAACGCGCCTGGGCTTGGACGAGGGCAGGCCCCTAC
GTCCTCGCCCAAACAGCTAAGCCGGCTTGTCAGACGGAGTGGCCCGCAGC
CCGTTGGCCCGCAGCCCGTTGGGATGGTTTCAATGTACGGCGACGCGGCA
GTTCTACCAGTTCAAAGGGTTTCGACCGACGAAGAGGCGCAAACGCAGTG
GCGAGCGAAACACCCCGCTGAGGCTATGTCCGTCCCTCTCGCAGTGTTGG
TGCTGATAGTCAATATCGTGGCGGGTGCGTCGGTCTTCTCTCGCGACAAC
CATTCATTGGAACTAGAGGTGCCTGTGTGTGTATTGATATTATTTGCTAC
ACTCTTTGCCCCGATATACACTCACATGTACCAACAGCGCCCGTGGTACG
GTGACTGGTCTTCAACGACACACTTGGCGGATCTGGTGGTCGTTGCTAGC
GACCTGACGGCCCGGCTGGGCTGTGGTAACGCGCTCCTCCTTCGATTTTA
TCCTTCTAGGATGAGGGGCGAGATCGGCGAGAGGATCACCATGGCCGCTA
CATACTGTAAACTGTGGAACTGGATCGTAGGGCATCGTCAGCTGGGGCAC
GACCTGAGCCGAGAATTTGTGCAGAAGTCGATAGGGTGGCTCAGCGCATC
AGGTTGCATGTTGGTGGACACTGATGGCAGGGTATCGCCCAACCGGGACC
TCACATGGTTGGTGGTGACGCTGAATCGCTGCCTGAGAGAGAACAAGCTG
AAGGAAACAGACGAGGAGGAGGTGAAGCGTGGTTTGGCCGGAATTGCCCC
TCTGGGTGAGCTGGTCCTTCCGCCCGTCCTGGCGGCGAAGACAGGGCCTA
AGGTGGCGAAAGGTGGCATCCGGGAGGTCTGGATGAAAGAGGCTGGGGTG
TACTGGCGTATCTCTGACTCGTCGATACGAATTGCTTGGTCTGGAGATAA
CAAGGGGATCGGGTACGTGGGCGGAATCCTAGTGAGGGTCTCTCAATCAG
ACGCATCTGTCGGTTGGCGTGTGGCGGAGCGGGACGGTAAAGCACTTCTG
AGGGGGGATCTGACACTTCCTGGTGTCAACCTTGTGGCCTCAATCGTCGG
ATATGCCAACACAATGTTCGGAGTCGCTTTCCTCATTGGCCGGGAACTGT
CTCGAGGATACTGGGTGGTCTTCGCGAACACGCTAGGGGAAGTAGTCTCA
ATACTGATAGTCGCCGGGCCTTCGCTCGGACTGGGTGACATACGGGCGTG
GTGGGTGATGGCAGACCCCACCAATGGACTTCGCGCTCTGACCAGATCAA
GTAGGGGCAACTGCATGGGTATCCTTGTAGTCGAAGCTCTGTCATCCCTA
ACGGGAGCAGTTATCGCCGCACTGGGGTCGGGCTCGGATTATGTGTGGGC
GGCGGCGGGTGCCATCTCCGGGGTAATAACAATCATCGTCGGGTTTACCC
CAGGAGCCATCGCTAAAGCATCTATCGCCTGTCTGTCTGTGTTTGTCGTC
GGCGTGGCGGGTGAAATAGCATTGCTCGCAATTACCCAGGGATCGGATTG
GCTGACTTGGTGCGTGGTTGCGTGCTCGACGGCCGAGGTCATACTACTTG
GCTTCCTCTTGCTCGACCTAGTCCGGGCGTCAAGGACGAAGAGGCGCGTG
CTAGGGAGAGAAAACAACAGGGCCGAGAGGCCAACGAATGCAATCGGCGA
GCGTCCCACGCTGAAAGGGGGGCAGTATGATTCCCTTGGAATAGGGGTCG
GAACGCCTGAGCCCGTTCTTTCAGTCGGGGGCATACGGGGCTCATCTAAA
TGGCCACCTTCTACGATCATACGAGCCGGGGGTTTTAGGCACGGTATTCG
GAGTTTTCACTGTGATGACGTTCCGCAGAACATCGCCGACATTAGCGACG
GCTGGATGGTCCTCAGAGAGACGCGCGCCCGCCCGGCCGAACAGTCTGGT
TCAACAAATGCCCATGCGTTTGGCTTTGAGTTTTGGGGCTTCCTGGTGAA
ACTAGCAAACGGGGGGGCGCACCCGATACTGAGCACTCACGCCTTCCCGG
ACGCCATTCTATCACCCAGAGGAAGAGACCAGAGTATGGGTGTGTGA
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