mRNA_Ecto-sp13_S_contig12092.1776.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12092.1776.1
Unique NamemRNA_Ecto-sp13_S_contig12092.1776.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12092.1776.1 vs. uniprot
Match: A0A6H5JZI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI2_9PHAE)

HSP 1 Score: 535 bits (1378), Expect = 1.370e-175
Identity = 281/310 (90.65%), Postives = 287/310 (92.58%), Query Frame = 1 
Query:    1 MTDSSPRARASDASGSRIFGSPGYGKNYPAAAAVAAVPARDPVAAIDQQRRGRVGDSPAHGAGASAVGGHTRGSVSEGGNGAASTTASVVRVPPPMPNTIVLPSTEVRLGLPHSNISPLLKAERGVFPFVPDGAEKDKEDEALQASAGAEAVVRDCLYNSHGMVALDGYLWKPGSIRLVRRWMMLVDNTLYYFVKPGDRKPRGVISLPGCIAEAVSSDEQEPAGEDLAARKEKEPRKSRVPNGYYGLRLFRPNHHGKDSNARLFLAKTAQERDDWVVELRVASRVVPLEDSFQIKALLRKGAFASVSETV 930
            MTDSSPRARASDASGSRIF SPGYGK  PAAAAV   PARDPVA IDQQRRG VGDSPAHGAG    GGHTR SVSEGGNGAA+T ASV RVPPPMPNTIVLPSTEV+LGLPHSNISPLLKAERGVFPFVPDGAEKDK +EALQASAGAE VVRDCLYNSHGMVALDGYLWKPGSIRLVRRWMMLVDNTLYYFVKPGDRK RGVISLPGCIAEAVSSDEQEPAGEDL+ARKEKEPRKSRVPNGYYGLRLFRPNHHGKDSNARLFLAKTAQERD+WV ELRVASRVVPLED F+IKALLRKGAFASV   V
Sbjct:  871 MTDSSPRARASDASGSRIFSSPGYGKKDPAAAAV---PARDPVAVIDQQRRGMVGDSPAHGAG----GGHTRASVSEGGNGAAATAASVARVPPPMPNTIVLPSTEVQLGLPHSNISPLLKAERGVFPFVPDGAEKDKGEEALQASAGAEEVVRDCLYNSHGMVALDGYLWKPGSIRLVRRWMMLVDNTLYYFVKPGDRKARGVISLPGCIAEAVSSDEQEPAGEDLSARKEKEPRKSRVPNGYYGLRLFRPNHHGKDSNARLFLAKTAQERDEWVAELRVASRVVPLEDIFEIKALLRKGAFASVHRCV 1173
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BLAST of mRNA_Ecto-sp13_S_contig12092.1776.1 vs. uniprot
Match: D8LD50_ECTSI (Asparagine-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD50_ECTSI)

HSP 1 Score: 504 bits (1299), Expect = 1.240e-174
Identity = 271/312 (86.86%), Postives = 275/312 (88.14%), Query Frame = 1 
Query:    1 MTDSSPRARASDASGSRIFGSPGYGKNYPAAAAVAAVPARDPVAAIDQQRRGRVGDSPAHGAGASAVGGHTRGSVSEGGNGAASTT--ASVVRVPPPMPNTIVLPSTEVRLGLPHSNISPLLKAERGVFPFVPDGAEKDKEDEALQASAGAEAVVRDCLYNSHGMVALDGYLWKPGSIRLVRRWMMLVDNTLYYFVKPGDRKPRGVISLPGCIAEAVSSDEQEPAGEDLAARKEKEPRKSRVPNGYYGLRLFRPNHHGKDSNARLFLAKTAQERDDWVVELRVASRVVPLEDSFQIKALLRKGAFASVSETV 930
            MTDSSPRARASDASGSRIF SPG+GKN PAAAA  AVPARDPVAAIDQQRRGR GDSPAHGA                          ASV RVPPPMPNTIVLPSTEVRLGLPHSNISPLLKAERGVFPFVPDGAEKDKE+EALQASAGAEAVVRDCLYNSHGMVALDGYLWKPGSIRLVRRWMMLVDNTLYYFVKPGDRKPRGVISLPGCIAEAVSSDEQEPAGEDLAARKEKEPRKSRVPNGYYGLRLFRPNHHGKDSNARLFLAKTAQ+RD+WV ELRVASRVVPLED FQIKALLRKGAFASV   V
Sbjct:    1 MTDSSPRARASDASGSRIFSSPGFGKNDPAAAA--AVPARDPVAAIDQQRRGRGGDSPAHGAXXXXXXXXXXXXXXXXXXXXXXXXXXASVARVPPPMPNTIVLPSTEVRLGLPHSNISPLLKAERGVFPFVPDGAEKDKEEEALQASAGAEAVVRDCLYNSHGMVALDGYLWKPGSIRLVRRWMMLVDNTLYYFVKPGDRKPRGVISLPGCIAEAVSSDEQEPAGEDLAARKEKEPRKSRVPNGYYGLRLFRPNHHGKDSNARLFLAKTAQDRDEWVAELRVASRVVPLEDIFQIKALLRKGAFASVHRCV 310
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12092.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZI2_9PHAE1.370e-17590.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD50_ECTSI1.240e-17486.86Asparagine-rich protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12092contigEcto-sp13_S_contig12092:479..3892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score508.8
Seed ortholog evalue1.7e-141
Seed eggNOG ortholog2880.D8LD50
Model size930
KEGG koko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Ec32 ortholog descriptionasparagine-rich protein
Ec32 orthologEc-11_000460.1
EC2.7.11.17
Cds size930
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462642.3760867-CDS-Ecto-sp13_S_contig12092:478..5981681462642.3760867-CDS-Ecto-sp13_S_contig12092:478..598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12092 479..598 -
1681462642.3888934-CDS-Ecto-sp13_S_contig12092:1472..15391681462642.3888934-CDS-Ecto-sp13_S_contig12092:1472..1539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12092 1473..1539 -
1681462642.398183-CDS-Ecto-sp13_S_contig12092:2471..26241681462642.398183-CDS-Ecto-sp13_S_contig12092:2471..2624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12092 2472..2624 -
1681462642.4075835-CDS-Ecto-sp13_S_contig12092:3302..38921681462642.4075835-CDS-Ecto-sp13_S_contig12092:3302..3892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12092 3303..3892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12092.1776.1prot_Ecto-sp13_S_contig12092.1776.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12092 479..3892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12092.1776.1

>prot_Ecto-sp13_S_contig12092.1776.1 ID=prot_Ecto-sp13_S_contig12092.1776.1|Name=mRNA_Ecto-sp13_S_contig12092.1776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=310bp
MTDSSPRARASDASGSRIFGSPGYGKNYPAAAAVAAVPARDPVAAIDQQR
RGRVGDSPAHGAGASAVGGHTRGSVSEGGNGAASTTASVVRVPPPMPNTI
VLPSTEVRLGLPHSNISPLLKAERGVFPFVPDGAEKDKEDEALQASAGAE
AVVRDCLYNSHGMVALDGYLWKPGSIRLVRRWMMLVDNTLYYFVKPGDRK
PRGVISLPGCIAEAVSSDEQEPAGEDLAARKEKEPRKSRVPNGYYGLRLF
RPNHHGKDSNARLFLAKTAQERDDWVVELRVASRVVPLEDSFQIKALLRK
GAFASVSETV
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mRNA from alignment at Ecto-sp13_S_contig12092:479..3892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12092.1776.1 ID=mRNA_Ecto-sp13_S_contig12092.1776.1|Name=mRNA_Ecto-sp13_S_contig12092.1776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12092:479..3892- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGACTCGTCTCCAAGGGCGCGAGCAAGCGACGCGAGCGGTAGCCG
TATTTTCGGCAGCCCGGGCTACGGCAAGAACTACCCCGCCGCCGCCGCCG
TCGCCGCGGTCCCCGCGAGGGATCCCGTCGCGGCGATAGACCAACAACGG
AGGGGCAGGGTCGGAGACTCCCCCGCCCACGGCGCTGGCGCCAGCGCCGT
CGGTGGCCACACGAGAGGTAGCGTGAGCGAAGGGGGCAACGGCGCCGCCT
CCACCACCGCCTCCGTGGTAAGAGTACCGCCCCCGATGCCGAACACCATC
GTCCTGCCGTCGACGGAGGTGAGACTCGGCCTCCCACACTCGAACATCTC
TCCGCTCTTGAAGGCCGAGCGCGGCGTGTTTCCGTTCGTGCCCGACGGGG
CGGAGAAGGACAAGGAGGACGAGGCTCTGCAGGCGTCGGCGGGGGCGGAG
GCGGTGGTGCGCGACTGCCTGTACAACAGCCACGGCATGGTCGCCCTGGA
CGGGTACCTCTGGAAGCCCGGGTCGATTCGGCTGGTCCGCCGGTGGATGA
TGCTCGTGGACAACACTCTGTACTACTTCGTCAAGCCCGGGTATGGAAAA
GGCCGTCCCATGTGGAATAGATAGAATAGAAGCACTCTCTTGTTTTCCAC
TGTTATAGTAAGATTGACCCCGCATTAGATCATAAGCGTGTTCGACTTAT
CGTCGTTGGTGTGTTGTTTATTTGTAGTTGTTGGGGGGCAAATTTACGTT
CCGTTCAAGGTATTGATTGTTGAGTCGTTCGGTGCTATGTTGGTTTGGGT
GAAAACAGCAGTACCTTAGAACTTGTTCCCTTGATTGCAACACTAAACCT
TATTGTTCTCAATGCGATGTCGTTGAGCCCTCTGCACCAAATCGTCATCA
TTGTCGCTGTTTCCTGGGAAATCCGGTCTCTGTTTCAAGACGCTAGAACG
CTAAATTGGGCACCAGCCGTTGTTGGTTGTCCCGGAAGCCTCGAAAGCTC
CACTGTCAGGTTGATCTGTCGGGGTTGATTGCACACCTCTTCATCCTGTT
CATCCACCGTTCCTCTCGGGGGGGTTCCAGAACGGACCCGCAATCAAGTC
AGTCTCGGGTCCCAGGCTCAACTCGTTTCGTGTGTCGTCGCTATCGTCGA
GCGTAGGTTATCGTTGTATAGTCTTCAACTTTGCGTAGGAATCTGTTTAC
CGCTGAGCTATTCTCTGCTGTTTCACCTAACTAATTGCTGTTTGGCTCGG
TTCTGCGGACATGTGCAGGGATCGGAAACCCAGAGGCGTTATTTCTTTGC
CGGGGTGCATCGCGGAGGCGGTGTCCTCGGACGAACAAGAACCAGCGGGG
GAAGACCTTGCCGCTAGGAAGGAGAAGGAGCCTCGCAAGTCCCGCGTGCC
CAACGGGTACTACGGTCTCAGGTACGCACGCTGCCGCTGCTGCCGCTGCT
GCTGCGGCTTGCTCTTGTTCTGGAGACCGGAGTTCCCGCCGCGGCAGACA
GGCGTTTTTTATGGAAAGGAAGGAAACGTTTAGGATAGACATGCCTTTAA
AAAGGCATGGAACTCCCGCCTCCACCAGCAAGCGTTTTTAACGGTAAAAG
GGAAAAGTACATGGGATAGACATGCCCCTGAAGGGATGGAACTCCCACCT
CGACAAGCAGGCGTTTCTAACAGGGAAGGCGAAATAAGCACACCTTAGGG
TTGGAGTTGAGAGGACGAAGGGGAGCCTCCGTTTCTGTTGCTCCCACGCT
TCGCTGGTCCTTTCTACCGTACCGTACCGTCTTGGCGTCATGCGTTCGAC
GTCATCGTCCGATTATGCTTCATGCTCTCCAGCGGTATGTAGCACTTGTG
CGCGTCGTTGAGCCACATTTTTTGTCGACGCCCTAGTTGCTGCTCCAGCC
GCATGCATTGCTGAGTATTTTTTCCCACCAATGCGTCGTCATAATATCCT
TCCGTTGCAGCCGCTTGGCATGACGTGCAGTCTCCGTGTGATCATCTTGA
CCATCTTGACGGGCTTGCCTCCTGGTCCACGTTTGCTGCGAGTTTCTCAT
CATGGTTTCCCGCGCAATTTTTACGTCCCGTTTCCGTCCCGTTTCCGTCT
CGTTTCCGTCTCGTTTCCGTCTCGTTTCCGTCTCGTTTCCGTCCCGCTTC
GTCCCGTTTTTTTTACCGGCGCGGCCGGTGTATTATGGCCTACGCATCTC
CCGTCCGTCTTGCCTGTGTGGACGCTTGCCCCCCCCCCCGTCGGTGATGT
CTTATTCTCCCACGGTATGGCGACGGGACGGGATGGGGTTACGGCACACA
TTGGGGTATATACATGGAACGGAATGACACACGGGACACGCGCGCGCGGA
CAGGCTTTTCCGGCCGAACCACCACGGTAAAGACAGCAACGCCCGACTCT
TTCTGGCCAAGACCGCCCAGGTAAGCCCTACCCGTACCAGTACAGTGTAA
CCCTTGCCGTCTACCGTAGGCGACATGACATGACATGATGTAAGGTATCA
CACACCCTGGATGATGATGGTTTTCACGGTTCGATTGTTTCTCAGCAAAA
AGAAGCGAGTGGCGGTGCCGAAGATGGCGGTGTTGGAACCAACCGTCTCG
TCGAGAGCTTTCTGAAAACCAACCAACCAACTTGTTGTACTTACTGTGCG
TGGTGGTGTAATCGAGCTTTAATGGAAAATGGTGCAGCGGGTGTGATATC
TTCAGTCACCCACGAACGTTAACCCTAATACCCAAAGCATCTAGCCGTAG
CTGTCCTTCCAAGGCTCACTTCGACTAGGGGAAGATGTCAGTGGACGAGT
GACGGTTTCATGTCCTGTGGGTCGTACCGAAACAATGGTTGATGTGAAGG
ATTTGTCTGTGATTAGGCATTATTTTTCTGGGAACTTGCGTGTGTTCGTC
CTGAGCGGGAGAACTTTTCGCTCAGCTGTCGTCGTGCGTTGTCGTTTGTA
CCGTGTGTTGGGGGCGGCTTTGTGGCTATTGGATTGTTTTTGTGTCGACG
AGAGCGGTAAGAATGGTTTGTACCTCACCCCACGATGGTTTGTACCTTGT
TAAGATAAACGCGGTGTCATGTACTTCGAAGTACTCCCTTTTTGTGGACA
CACCAGTGCACCTCACCTACCCTGTACCGTATTTTTTTTTTTTGTCATGA
CCAATGTACCATAATTTTTTGTCGTGACGAAAGCAGGGTACGCCATCCAA
AGAAGGATTGTGCCTCTTTTTGACGTAGTGGGTGTACCTCATCTCATCAT
GTATGGTATTGTACCCCTAATTGCTGGATGATACGTATTTGCAGGAACGC
GACGACTGGGTGGTAGAGCTTCGGGTGGCGTCGAGGGTGGTGCCTTTGGA
AGACAGCTTCCAGATCAAGGCGTTGCTCAGGAAGGGGGCTTTCGCGTCTG
TGAGTGAAACTGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12092:479..3892-

>mRNA_Ecto-sp13_S_contig12092.1776.1 ID=mRNA_Ecto-sp13_S_contig12092.1776.1|Name=mRNA_Ecto-sp13_S_contig12092.1776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12092:479..3892- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGACTCGTCTCCAAGGGCGCGAGCAAGCGACGCGAGCGGTAGCCG
TATTTTCGGCAGCCCGGGCTACGGCAAGAACTACCCCGCCGCCGCCGCCG
TCGCCGCGGTCCCCGCGAGGGATCCCGTCGCGGCGATAGACCAACAACGG
AGGGGCAGGGTCGGAGACTCCCCCGCCCACGGCGCTGGCGCCAGCGCCGT
CGGTGGCCACACGAGAGGTAGCGTGAGCGAAGGGGGCAACGGCGCCGCCT
CCACCACCGCCTCCGTGGTAAGAGTACCGCCCCCGATGCCGAACACCATC
GTCCTGCCGTCGACGGAGGTGAGACTCGGCCTCCCACACTCGAACATCTC
TCCGCTCTTGAAGGCCGAGCGCGGCGTGTTTCCGTTCGTGCCCGACGGGG
CGGAGAAGGACAAGGAGGACGAGGCTCTGCAGGCGTCGGCGGGGGCGGAG
GCGGTGGTGCGCGACTGCCTGTACAACAGCCACGGCATGGTCGCCCTGGA
CGGGTACCTCTGGAAGCCCGGGTCGATTCGGCTGGTCCGCCGGTGGATGA
TGCTCGTGGACAACACTCTGTACTACTTCGTCAAGCCCGGGGATCGGAAA
CCCAGAGGCGTTATTTCTTTGCCGGGGTGCATCGCGGAGGCGGTGTCCTC
GGACGAACAAGAACCAGCGGGGGAAGACCTTGCCGCTAGGAAGGAGAAGG
AGCCTCGCAAGTCCCGCGTGCCCAACGGGTACTACGGTCTCAGGCTTTTC
CGGCCGAACCACCACGGTAAAGACAGCAACGCCCGACTCTTTCTGGCCAA
GACCGCCCAGGAACGCGACGACTGGGTGGTAGAGCTTCGGGTGGCGTCGA
GGGTGGTGCCTTTGGAAGACAGCTTCCAGATCAAGGCGTTGCTCAGGAAG
GGGGCTTTCGCGTCTGTGAGTGAAACTGTC
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