mRNA_Ecto-sp13_S_contig68119.17754.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68119.17754.1
Unique NamemRNA_Ecto-sp13_S_contig68119.17754.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: A0A6H5K0A7_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 4.660e-32
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    4 FFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            +  AEMIYRWMFDGPYS LFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDD+
Sbjct:  240 YMVAEMIYRWMFDGPYSCLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDI 299
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: D7FJZ2_ECTSI (Proline iminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ2_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 4.830e-31
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    4 FFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            +  AEMIYRWMFDGPYS LFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDD+
Sbjct:  445 YMVAEMIYRWMFDGPYSCLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDI 504
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: A0A835ZBB4_9STRA (Proline iminopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.560e-21
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    4 FFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            +FT EM+YRWM DG Y+ L GLK AAELLA +  W  LYD+ AL KC VPCAAAVYYDDM
Sbjct:  351 YFTGEMVYRWMLDGDYAQLEGLKGAAELLAERTEWTVLYDKDALSKCQVPCAAAVYYDDM 410
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: A0A7S2UWW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWW7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.870e-19
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 IFFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            ++FT EM++ +MFDG YS L  LK AAELLA+ + W +LYD+ AL +C VPCAAAVYYDDM
Sbjct:  128 VYFTGEMVFPFMFDGCYSELAPLKKAAELLAADDSWVSLYDKDALAQCPVPCAAAVYYDDM 188
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: A0A3D3X0V3_9BACT (Alpha/beta hydrolase n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A3D3X0V3_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 5.800e-17
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 IFFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            +FFT EMIY WMFD  Y  L  LK+AAE+LA+ +GWP LYD  AL K  VPCAAA+YY+DM
Sbjct:  322 VFFTGEMIYPWMFD-EYKVLQPLKEAAEILAAYDGWPRLYDPDALRKNTVPCAAAIYYNDM 381
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: A0A0G4FUJ8_VITBC (AB hydrolase-1 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FUJ8_VITBC)

HSP 1 Score: 78.6 bits (192), Expect = 1.540e-15
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 IFFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            I FT EM++ WMF+  Y  L  L+D A L+A+K+ WP LY   +L++CDVPCAAAVYY+DM
Sbjct:  448 ILFTGEMVFSWMFE-DYEKLRPLRDVANLIANKDDWPPLYSIDSLKRCDVPCAAAVYYEDM 507
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: L1IZK6_GUITC (AB hydrolase-1 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IZK6_GUITC)

HSP 1 Score: 74.7 bits (182), Expect = 3.290e-14
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 IFFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            I+FTAE I+ WM+D  Y  L GLK  A LLASK+ W  LYD+  L  C VP AAAVYYDDM
Sbjct:  317 IYFTAEHIFDWMYD-DYLHLQGLKPVAALLASKQHWTKLYDKERLNACQVPTAAAVYYDDM 376
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: A0A7S4KZ08_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KZ08_GUITH)

HSP 1 Score: 74.7 bits (182), Expect = 3.490e-14
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 IFFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            I+FTAE I+ WM+D  Y  L GLK  A LLASK+ W  LYD+  L  C VP AAAVYYDDM
Sbjct:  443 IYFTAEHIFDWMYD-DYLHLQGLKPVAALLASKQHWTKLYDKERLNACQVPTAAAVYYDDM 502
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: A0A7I8KJV5_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KJV5_SPIIN)

HSP 1 Score: 74.3 bits (181), Expect = 4.740e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 IFFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            +FFT EM++ W+FD    +L  LK+AA LL+ KE WP+LYD  AL K +VP AAAVYY+DM
Sbjct:  412 VFFTGEMVFPWVFD-EMGALTHLKEAANLLSEKEDWPSLYDIDALNKNEVPVAAAVYYEDM 471
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BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Match: A0A7I8IVJ3_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IVJ3_SPIIN)

HSP 1 Score: 74.3 bits (181), Expect = 4.770e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 IFFTAEMIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAVYYDDM 183
            +FFT EM++ W+FD    +L  LK+AA LL+ KE WP+LYD  AL K +VP AAAVYY+DM
Sbjct:  382 VFFTGEMVFPWVFD-EMGALTHLKEAANLLSEKEDWPSLYDIDALNKNEVPVAAAVYYEDM 441
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68119.17754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0A7_9PHAE4.660e-3291.67AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
D7FJZ2_ECTSI4.830e-3191.67Proline iminopeptidase n=1 Tax=Ectocarpus siliculo... [more]
A0A835ZBB4_9STRA4.560e-2168.33Proline iminopeptidase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2UWW7_9STRA4.870e-1962.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3D3X0V3_9BACT5.800e-1763.93Alpha/beta hydrolase n=1 Tax=Candidatus Acetotherm... [more]
A0A0G4FUJ8_VITBC1.540e-1555.74AB hydrolase-1 domain-containing protein n=1 Tax=V... [more]
L1IZK6_GUITC3.290e-1460.66AB hydrolase-1 domain-containing protein n=1 Tax=G... [more]
A0A7S4KZ08_GUITH3.490e-1460.66Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7I8KJV5_SPIIN4.740e-1457.38Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A7I8IVJ3_SPIIN4.770e-1457.38Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68119contigEcto-sp13_S_contig68119:198..383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score117.9
Seed ortholog evalue1.6e-24
Seed eggNOG ortholog2880.D7FJZ2
Model size186
KEGG koko:K01259
KEGG ReactionR00135
KEGG Pathwayko00330,map00330
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons1
EggNOG free text desc.alpha/beta hydrolase fold
EggNOG OGs2QSNW@2759,COG0596@1
EC3.4.11.5
Cds size168
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.0779462-CDS-Ecto-sp13_S_contig68119:197..3651681463936.0779462-CDS-Ecto-sp13_S_contig68119:197..365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68119 198..365 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.0918741-UTR-Ecto-sp13_S_contig68119:365..3831681463936.0918741-UTR-Ecto-sp13_S_contig68119:365..383Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68119 366..383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68119.17754.1prot_Ecto-sp13_S_contig68119.17754.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68119 198..365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68119.17754.1

>prot_Ecto-sp13_S_contig68119.17754.1 ID=prot_Ecto-sp13_S_contig68119.17754.1|Name=mRNA_Ecto-sp13_S_contig68119.17754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MIYRWMFDGPYSSLFGLKDAAELLASKEGWPALYDRSALEKCDVPCAAAV
YYDDM*
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mRNA from alignment at Ecto-sp13_S_contig68119:198..383-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68119.17754.1 ID=mRNA_Ecto-sp13_S_contig68119.17754.1|Name=mRNA_Ecto-sp13_S_contig68119.17754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68119:198..383- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTTTTTTACAGCCGAGATGATCTACCGATGGATGTTCGACGGGCCGTA
CTCGAGCCTGTTCGGGTTGAAAGATGCGGCGGAACTTCTGGCGAGTAAAG
AGGGATGGCCGGCACTGTACGACCGCAGCGCCCTAGAAAAGTGCGACGTT
CCCTGCGCCGCCGCAGTGTACTACGACGACATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68119:198..383-

>mRNA_Ecto-sp13_S_contig68119.17754.1 ID=mRNA_Ecto-sp13_S_contig68119.17754.1|Name=mRNA_Ecto-sp13_S_contig68119.17754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68119:198..383- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTACCGATGGATGTTCGACGGGCCGTACTCGAGCCTGTTCGGGTT
GAAAGATGCGGCGGAACTTCTGGCGAGTAAAGAGGGATGGCCGGCACTGT
ACGACCGCAGCGCCCTAGAAAAGTGCGACGTTCCCTGCGCCGCCGCAGTG
TACTACGACGACATGTGA
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