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Homology
BLAST of mRNA_Ecto-sp13_S_contig6811.17753.1 vs. uniprot
Match: A0A6H5JT76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT76_9PHAE) HSP 1 Score: 838 bits (2164), Expect = 9.550e-299 Identity = 559/651 (85.87%), Postives = 575/651 (88.33%), Query Frame = 1
Query: 82 MFVKTHAAAAASTVMVLISLRTGEGFVPPAGANPRTGSSXXXXXXXXXXXXXXXXXXXXXX-TPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKGLSSVEGTIERKQQLKVAELKKQLQRFASLRMWRRATETFEKAKADGLPITAATYTHAINVMSKGGRWKEAIELLEEMIAANNDSNGGPKVAPSVVSYNAAITACSRASKVPAALRLLDEMSARSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLDQVRELDPTPSESTMADVLTSAIAACVTEGAWEQATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDNSGKDEAQRPTLECYNAVVLGSAMAGDPKEALRTLKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTAITILDEQRSGAFPDAPPDRWSYNNAIEACGRAGMVEPAVALLDAMRAASHRNRRLRPCXXXXXXXXXXXXXXXXXXXXXXXXXGMKKDGIKGDQLCSLAAFSAVAAVGRAEKAAEILEDLARGGVSTSEGAVASAKEGLVEIFGSDVGGGGRFARVMAAFEVLEAAHAEKAKKKAELAAAEEGRSA 2031
MFVKTHAAAAASTVMVLISL +GEGFV PAGAN +TGS XXXXX TPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QGKGLSSV+GTIERKQQLKVAEL+KQLQRFASLRMWRRATE F+KAKAD LPITAATYTHAINVMSKGGRWKEAIELLEEMIAA NDSNGGPKV PSVVSYNAAITACSRA+KVPAALRLLDEMS+RSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXX RAAGMEPDLVCLKGAMEACRSKGAPKEAGVVL+QVRELDP PS STMADVLTSAIAACVTEGAWEQATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDN GKDEAQRPTLECY+AVVLGSA+AGDPKEALR LKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTA+T+LDEQRSGAFPDAPPDRWSYNNAIEACGR LDAMRAASHRNRRLRPCXXXXXXXXXXXXXXXXXXXXXXXXX MKKDGIKGDQLCSLAAFSAVAAVGRA+KAAEILEDLARGGVSTSEGAVASAKEGLVE+ GSD+ GGGRFARVMAAFEVLEAA AEKA KKAEL+AAEEGRSA
Sbjct: 1 MFVKTHAAAAASTVMVLISLGSGEGFVQPAGANLKTGSGXXXXXSNCCPSAATSVGRKAAGHTPALLADRGNTRHRIGNGNLILMCEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQKQQQGKGLSSVDGTIERKQQLKVAELEKQLQRFASLRMWRRATEAFDKAKADRLPITAATYTHAINVMSKGGRWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRANKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPRPSASTMADVLTSAIAACVTEGAWEQATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDNGGKDEAQRPTLECYDAVVLGSALAGDPKEALRILKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTAVTVLDEQRSGAFPDAPPDRWSYNNAIEACGRXXXXXXXXXXLDAMRAASHRNRRLRPCXXXXXXXXXXXXXXXXXXXXXXXXXXMKKDGIKGDQLCSLAAFSAVAAVGRADKAAEILEDLARGGVSTSEGAVASAKEGLVEVLGSDIEGGGRFARVMAAFEVLEAAQAEKAAKKAELSAAEEGRSA 651
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 807.4 |
| Seed ortholog evalue | 5e-231 |
| Seed eggNOG ortholog | 2880.D7FIX3 |
| Model size | 2034 |
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| Ec32 ortholog description | Pentatricopeptide repeat |
| Ec32 ortholog | Ec-07_007800.1 |
| Cds size | 1953 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463935.9945924-CDS-Ecto-sp13_S_contig6811:931..1464 | 1681463935.9945924-CDS-Ecto-sp13_S_contig6811:931..1464 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6811 932..1464 - |
| 1681463936.007268-CDS-Ecto-sp13_S_contig6811:2007..2470 | 1681463936.007268-CDS-Ecto-sp13_S_contig6811:2007..2470 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6811 2008..2470 - |
| 1681463936.0169468-CDS-Ecto-sp13_S_contig6811:2780..3153 | 1681463936.0169468-CDS-Ecto-sp13_S_contig6811:2780..3153 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6811 2781..3153 - |
| 1681463936.0265486-CDS-Ecto-sp13_S_contig6811:3497..3621 | 1681463936.0265486-CDS-Ecto-sp13_S_contig6811:3497..3621 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6811 3498..3621 - |
| 1681463936.03687-CDS-Ecto-sp13_S_contig6811:4559..5019 | 1681463936.03687-CDS-Ecto-sp13_S_contig6811:4559..5019 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6811 4560..5019 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463936.0468225-UTR-Ecto-sp13_S_contig6811:5019..5100 | 1681463936.0468225-UTR-Ecto-sp13_S_contig6811:5019..5100 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig6811 5020..5100 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6811.17753.1 >prot_Ecto-sp13_S_contig6811.17753.1 ID=prot_Ecto-sp13_S_contig6811.17753.1|Name=mRNA_Ecto-sp13_S_contig6811.17753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=651bp
MFVKTHAAAAASTVMVLISLRTGEGFVPPAGANPRTGSSSGGSSNCCPSA ATSEESKPAGHTPALLADRSSTRHRRGNGNLILMCEGGGGSPAAVGATAG TAGRKGRKPPSAAAGVRRRPPQKQQQGKGLSSVEGTIERKQQLKVAELKK QLQRFASLRMWRRATETFEKAKADGLPITAATYTHAINVMSKGGRWKEAI ELLEEMIAANNDSNGGPKVAPSVVSYNAAITACSRASKVPAALRLLDEMS ARSGLSPDIYSYAAVMSGLAKARNPGRAIELLGEMRAAGMEPDLVCLKGA MEACRSKGAPKEAGVVLDQVRELDPTPSESTMADVLTSAIAACVTEGAWE QATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDNSG KDEAQRPTLECYNAVVLGSAMAGDPKEALRTLKVDVPKAGLQPNTQGFNH VLQGFAKVGDWKTAITILDEQRSGAFPDAPPDRWSYNNAIEACGRAGMVE PAVALLDAMRAASHRNRRLRPCRYSYRGALQACRAAVDDAAALRLLEGMK KDGIKGDQLCSLAAFSAVAAVGRAEKAAEILEDLARGGVSTSEGAVASAK EGLVEIFGSDVGGGGRFARVMAAFEVLEAAHAEKAKKKAELAAAEEGRSA * back to topmRNA from alignment at Ecto-sp13_S_contig6811:932..5100- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig6811.17753.1 ID=mRNA_Ecto-sp13_S_contig6811.17753.1|Name=mRNA_Ecto-sp13_S_contig6811.17753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6811:932..5100- (Ectocarpus species13 EcNAP12_S_4_19m) ACCTCGTTCCCATTGCGCAGGGCGACCAAGGGTGTCGTCAACACACCACC
GTGAGGCGTGGGAAGAGCTTGGTAGATCATCATGTTCGTGAAAACCCATG
CTGCTGCGGCAGCGAGTACAGTGATGGTGCTCATTTCCCTTCGTACTGGG
GAGGGCTTTGTCCCGCCCGCTGGTGCCAACCCCAGAACCGGCAGTAGCAG
CGGCGGCAGCAGCAACTGCTGTCCCAGCGCTGCTACTTCTGAGGAGAGCA
AACCTGCTGGCCATACGCCTGCGTTGCTCGCGGATCGTAGTAGCACTAGG
CATAGGAGAGGAAACGGGAACTTGATTTTGATGTGCGAGGGCGGGGGGGG
CTCGCCGGCTGCGGTAGGTGCAACGGCAGGCACGGCAGGGAGGAAGGGGC
GGAAGCCGCCGTCAGCAGCGGCAGGAGTCAGAAGAAGACCGCCTCAAAAA
CAGCAGCAGGGAAAGGGTTTGTCGTCGGTCGAGGGCACGATTGAGAGAAA
GCAGCAGCTCAAGGTGGCGGAGCTGAAGAAGCAGTTGCAACGTGAGTCCA
CAGCAGCAGTACTACTGCACAGACGCGTGACACGAGATATCACGCCCCGT
GGACCGATTGTCAAAGCTCGATTGGTCGACAGTAGGAATGGTGGCGGTGC
TGAAATATGGCGGCAATGGAACCGCCTCGTCGAAGGCTTTGTGAAAAAGT
GCTTGTTTGGTTTGAACATCCTCTTCGTCGTGGAGTGATCGAGCATTGGA
AACGGGTACCAAGGGGTGTGGTACCCACAGGTCCAATGTAAGACGTAGTA
GTTGTGTACGCTGCTGGTTATCCTGCGCGCACACGAAGGGTGTAGTAGCG
TGGCAAGAACCCACAGATTTGCCCATTTCACATGCAATGGCTTGGACTCC
TGCACTATCGCCACAGATATTCTCACAAGTGAGGCTGCATTATACTAGAG
TGTAAGCGAGAGCTACTGTAGATGACAGGATTTGTGTACTGTAAGCTTGT
GACCGGGAAGGGCGTCTGTCCTGCCTCCGTGGTAGCCACCGCGGTATTCA
TAGCATCAGCCTGAAACAGGTGTGAACACCACATCCCGTTGGCAACGACT
TACCACAACGCGACATTTGCACGAATCACTGGAAACAGTAGAGTCTCCAA
AGCTGCGCAAGGCAATCGGGTGATTGGATCGTAACGGCGTGGACACAACA
TCAACAACGGTGCTACCTGTAGTGTGAAGCCTCCACAGTTCCCCCGGTAG
ATGATCTCAGAATGCAGCCCATCAATCCAATACAGGGTTGAGTTCGGTGA
TCTTAAACATTCATGCTTAAACCAATTGTCTTATCTTCAAGTCTAATCAT
TCTGACAGCAGTGTACAAGTAGACCCCAAGTTCGTCCAAGGCAGCATCAC
CCATGACCCAAGATTCTGCCTGGACATGACATGCTCTCGCCCCCCCGCCC
CCCGCCCTCCGCATGCGCCTCTCCTGAAGGTTTCGCATCGTTACGGATGT
GGCGACGTGCGACCGAGACCTTTGAGAAGGCTAAGGCCGACGGGCTGCCC
ATCACCGCCGCAACCTACACGCACGCCATCAATGTCATGAGCAAGGGCGG
AAGGTATGGGAGTTTTTATGTGGGTATGTCATAGCAGGAGCCGGGGACGA
CGTTAATTGAGGAGATGCATGGCTGAGAATGCGACAGGCTTTGCGTGCGG
GATGCGAGTTAGGGTGTTACGTCAACCTGGTTGTGTTGATGTTCCCACCA
AGGTGCTACGGCCTACATTGGATACGTACAGCCCTGTTCCGTCCCCAGGG
ACTCCTCTCAGTGACCGCCAACATCAGCGAAAACGACATGGATCCTGAGG
TTTGACCAACTATGTGTGTTTCGCCTTTTGCTAACAACGCTGCCCCGCCC
CCACCCCCGCCCCCCCCTCCCCCGAAACAACAACTTTCCCCCGAAAGATG
GAAAGAAGCGATAGAACTGCTAGAAGAAATGATCGCCGCTAACAACGACA
GCAATGGCGGCCCCAAGGTCGCTCCATCAGTGGTGAGCTACAACGCGGCC
ATCACGGCGTGCTCGAGGGCAAGCAAGGTGCCTGCGGCGCTCCGCCTCCT
CGACGAGATGTCCGCTAGGTCTGGCCTCTCTCCCGACATCTACAGCTACG
CGGCGGTCATGTCAGGCCTGGCCAAGGCCAGGAATCCGGGGCGCGCGATC
GAGCTGCTGGGGGAGATGCGCGCGGCAGGGATGGAGCCGGACCTGGTGTG
CCTGAAGGGGGCGATGGAGGCTTGCCGGAGCAAGGGGGCGCCGAAGGAGG
CGGGCGTGGTTCTTGACCAGGTGGGTGGCGCTACGTGTTGTCTCGCAAGT
GATGGAAGAAAAGTTGTTGTGGTGTGTTTGGAGAAGATGTGTAGACCGAC
GCCCCAAGAAGAGGGTTGCATGATGCTTGATGAACCCAACTTAGTAAGGG
GACTGAAGATGGGACGGATGGTGAGACGCGGGGAGAGGGTGCTCGTGTGC
AGGAGCTGTGCTTGGCCTGCGGCGGAAAATCGGCCATATCGCGATATCGC
TTGCCAGAGCTCCGTTCGTTGTATCGATTGGGGCCCTCACTCCCCCCACC
CCCCCCCTTGTGCCACCCCGACAAAAACAGGTCCGAGAGCTAGACCCCAC
ACCGAGCGAAAGCACCATGGCCGACGTCCTCACCTCTGCCATCGCGGCGT
GCGTGACGGAGGGCGCCTGGGAGCAAGCCACAGACTGGCTCACCGACATC
CGGATGGCGAGAGGGGGAAGGCTTCCGCCACCGGAGGCCTACGCCGCCGC
CGCAAACGCTTGCGCCCGGGCGGGGCAGGGCGTTCGCGCCCGCGCGCTGA
TCGCCGAGCTCGACAACAGCGGCAAGGACGAGGCGCAACGGCCTACGCTT
GAGTGCTACAACGCGGTGGTGCTGGGCAGCGCCATGGCCGGCGACCCGAA
GGAGGCTCTGAGGACTCTAAAGGTGGACGTGCCAAAGGCTGGGCTTCAGC
CGAACACGCAGGGTTTCAACCACGTGCTGCAGGGGTTCGCGAAGGTCGGG
GACTGGAAGACGGCGATCACGATTCTGGACGAGCAGCGATCAGGTGGGGT
ATTGGCGGGGGGGGGTTGAGAGCGGAGGAAATCGTTCCGTTTTGTGGTGG
CGGTTCTCGTGTGTTGTTGTACGGTTCTCCGGCGTAAACCTCGACTGCGG
GTCGTTCGTCTATATCCTAGAATTCGTTTTTTCTTACGGAAGGGGTCAGG
TGCTGAAGGTGTTGAGTTGCATCGCTCGAGGAACGGTTGAAATGGCACGA
ACTTGTTTTTCTGTCAACAACTTTGCCCCCGATCGCGGGGTCGACGGCCG
GGGTTCTGGTGCAGTGGCGTGAAGATTGCTGTTGAATGCTTCTCACTAGC
ACCGCAAGGTGTTAAATCTCATACGTTCATGAGTGCTTGCTACTTGGTTC
TCACTCGCATCGCAATGTGCTTGCCGTCGTGTCATGCATTTATTCAAGGT
TGTGTTTCTCTCGGGCAACCGTGTTGGTCCTCTCCGATTTTTTTGTGTTT
TTGAGGTTGTAAACCCATTTTCGCTTGTTTCACTAATATCTGTCATCATT
ACTCATACTTCTTGGCGGCACAACATCAACCACCAGGGGCGTTCCCGGAC
GCCCCCCCGGACCGGTGGAGCTACAACAACGCCATCGAGGCCTGCGGCAG
GGCCGGGATGGTCGAGCCCGCCGTCGCCCTCCTCGACGCCATGCGCGCCG
CCAGCCACCGCAACCGCCGCCTCAGGCCATGCCGCTACAGCTATCGTGGC
GCCCTCCAGGCGTGCCGCGCGGCAGTGGACGACGCCGCCGCTCTCCGGCT
GCTGGAAGGCATGAAGAAGGACGGGATTAAAGGCGACCAGCTGTGCTCGC
TGGCGGCGTTTTCGGCGGTGGCGGCGGTCGGGAGGGCCGAAAAGGCAGCA
GAAATCCTAGAGGACCTAGCGAGGGGAGGCGTAAGCACCAGCGAGGGAGC
GGTGGCGTCGGCAAAGGAGGGTTTGGTGGAGATTTTCGGCAGTGATGTAG
GGGGAGGGGGGAGGTTTGCTAGGGTGATGGCGGCGTTCGAGGTGCTGGAA
GCCGCGCACGCGGAGAAGGCCAAGAAAAAGGCGGAGCTCGCGGCGGCGGA
GGAGGGCAGGAGCGCTTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig6811:932..5100- >mRNA_Ecto-sp13_S_contig6811.17753.1 ID=mRNA_Ecto-sp13_S_contig6811.17753.1|Name=mRNA_Ecto-sp13_S_contig6811.17753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1953bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6811:932..5100- (Ectocarpus species13 EcNAP12_S_4_19m) ATGTTCGTGAAAACCCATGCTGCTGCGGCAGCGAGTACAGTGATGGTGCT CATTTCCCTTCGTACTGGGGAGGGCTTTGTCCCGCCCGCTGGTGCCAACC CCAGAACCGGCAGTAGCAGCGGCGGCAGCAGCAACTGCTGTCCCAGCGCT GCTACTTCTGAGGAGAGCAAACCTGCTGGCCATACGCCTGCGTTGCTCGC GGATCGTAGTAGCACTAGGCATAGGAGAGGAAACGGGAACTTGATTTTGA TGTGCGAGGGCGGGGGGGGCTCGCCGGCTGCGGTAGGTGCAACGGCAGGC ACGGCAGGGAGGAAGGGGCGGAAGCCGCCGTCAGCAGCGGCAGGAGTCAG AAGAAGACCGCCTCAAAAACAGCAGCAGGGAAAGGGTTTGTCGTCGGTCG AGGGCACGATTGAGAGAAAGCAGCAGCTCAAGGTGGCGGAGCTGAAGAAG CAGTTGCAACGTTTCGCATCGTTACGGATGTGGCGACGTGCGACCGAGAC CTTTGAGAAGGCTAAGGCCGACGGGCTGCCCATCACCGCCGCAACCTACA CGCACGCCATCAATGTCATGAGCAAGGGCGGAAGATGGAAAGAAGCGATA GAACTGCTAGAAGAAATGATCGCCGCTAACAACGACAGCAATGGCGGCCC CAAGGTCGCTCCATCAGTGGTGAGCTACAACGCGGCCATCACGGCGTGCT CGAGGGCAAGCAAGGTGCCTGCGGCGCTCCGCCTCCTCGACGAGATGTCC GCTAGGTCTGGCCTCTCTCCCGACATCTACAGCTACGCGGCGGTCATGTC AGGCCTGGCCAAGGCCAGGAATCCGGGGCGCGCGATCGAGCTGCTGGGGG AGATGCGCGCGGCAGGGATGGAGCCGGACCTGGTGTGCCTGAAGGGGGCG ATGGAGGCTTGCCGGAGCAAGGGGGCGCCGAAGGAGGCGGGCGTGGTTCT TGACCAGGTCCGAGAGCTAGACCCCACACCGAGCGAAAGCACCATGGCCG ACGTCCTCACCTCTGCCATCGCGGCGTGCGTGACGGAGGGCGCCTGGGAG CAAGCCACAGACTGGCTCACCGACATCCGGATGGCGAGAGGGGGAAGGCT TCCGCCACCGGAGGCCTACGCCGCCGCCGCAAACGCTTGCGCCCGGGCGG GGCAGGGCGTTCGCGCCCGCGCGCTGATCGCCGAGCTCGACAACAGCGGC AAGGACGAGGCGCAACGGCCTACGCTTGAGTGCTACAACGCGGTGGTGCT GGGCAGCGCCATGGCCGGCGACCCGAAGGAGGCTCTGAGGACTCTAAAGG TGGACGTGCCAAAGGCTGGGCTTCAGCCGAACACGCAGGGTTTCAACCAC GTGCTGCAGGGGTTCGCGAAGGTCGGGGACTGGAAGACGGCGATCACGAT TCTGGACGAGCAGCGATCAGGGGCGTTCCCGGACGCCCCCCCGGACCGGT GGAGCTACAACAACGCCATCGAGGCCTGCGGCAGGGCCGGGATGGTCGAG CCCGCCGTCGCCCTCCTCGACGCCATGCGCGCCGCCAGCCACCGCAACCG CCGCCTCAGGCCATGCCGCTACAGCTATCGTGGCGCCCTCCAGGCGTGCC GCGCGGCAGTGGACGACGCCGCCGCTCTCCGGCTGCTGGAAGGCATGAAG AAGGACGGGATTAAAGGCGACCAGCTGTGCTCGCTGGCGGCGTTTTCGGC GGTGGCGGCGGTCGGGAGGGCCGAAAAGGCAGCAGAAATCCTAGAGGACC TAGCGAGGGGAGGCGTAAGCACCAGCGAGGGAGCGGTGGCGTCGGCAAAG GAGGGTTTGGTGGAGATTTTCGGCAGTGATGTAGGGGGAGGGGGGAGGTT TGCTAGGGTGATGGCGGCGTTCGAGGTGCTGGAAGCCGCGCACGCGGAGA AGGCCAAGAAAAAGGCGGAGCTCGCGGCGGCGGAGGAGGGCAGGAGCGCT TGA back to top
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