mRNA_Ecto-sp13_S_contig68.17739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68.17739.1
Unique NamemRNA_Ecto-sp13_S_contig68.17739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68.17739.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 4.680e-137
Identity = 261/312 (83.65%), Postives = 270/312 (86.54%), Query Frame = 3 
Query:  204 MTDQGALESQLAGLQAQREKLVALVGDDPHSPLIPLQEELAVAIDGIIERLSLLREQTGENNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSFPVVVGTLCLAPRVFDRRRARAVVEEVENFKGTCLVTWVHPRKHGEIVCRSWKKGRSCKFSGPDCRFSHGVEVPLSGLLPDDGGGDSSWLASLRSGSQVLACYLDRVWYEATAEGPATPAAAAXXXXXASSMLLAVRFKGFEDDGPLSVPADSSHLAPLEAAVTEPEMDGVGGGXXXXXXXXXXXXXXXXXXSDLEDAWAADAAAAGRRGERDANM 1139
            MTDQGALE QLA L+AQRE+LVALVGDD HSPLIPLQEELAVAIDGIIERLSLLREQ GEN  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX EPSFP+VVG LCLAPRVFDRRRARAVVEEVE+ KGTCLVTWVHPRKHGEIVCR WK+GRSCKFSGPDC FSHGVEVPL GLLPDDGGG SSWLASLRSGS+VLA Y DRVWYEATAEGPA PA A      ASSMLLAVRFKGFE DGP+SVPADSSHLAPLEAAVT PE+ GVGGG           XXXXX  SDLEDAWAADA AAGR GERD +M
Sbjct:    1 MTDQGALERQLADLRAQREQLVALVGDDSHSPLIPLQEELAVAIDGIIERLSLLREQAGENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EPSFPIVVGALCLAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDDGGGGSSWLASLRSGSRVLAFYHDRVWYEATAEGPARPAGAGAGAA-ASSMLLAVRFKGFEADGPVSVPADSSHLAPLEAAVTAPEIHGVGGGNGGASDDAEHEXXXXXE-SDLEDAWAADAVAAGRGGERDGSM 309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68.17739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPC0_9PHAE4.680e-13783.65Zinc finger CCCH-type with G patch domain-containi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68contigEcto-sp13_S_contig68:29949..33806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1140
Hectar predicted targeting categorymitochondrion
Exons3
Cds size1002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.0452774-UTR-Ecto-sp13_S_contig68:29948..300851681463934.0452774-UTR-Ecto-sp13_S_contig68:29948..30085Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68 29949..30085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.0558121-CDS-Ecto-sp13_S_contig68:30085..302621681463934.0558121-CDS-Ecto-sp13_S_contig68:30085..30262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 30086..30262 +
1681463934.066466-CDS-Ecto-sp13_S_contig68:32114..324531681463934.066466-CDS-Ecto-sp13_S_contig68:32114..32453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 32115..32453 +
1681463934.0758882-CDS-Ecto-sp13_S_contig68:33320..338061681463934.0758882-CDS-Ecto-sp13_S_contig68:33320..33806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 33321..33806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68.17739.1prot_Ecto-sp13_S_contig68.17739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68 30086..33806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68.17739.1

>prot_Ecto-sp13_S_contig68.17739.1 ID=prot_Ecto-sp13_S_contig68.17739.1|Name=mRNA_Ecto-sp13_S_contig68.17739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MCRRLLLTPVASQPRRAQRERLMTDQGALESQLAGLQAQREKLVALVGDD
PHSPLIPLQEELAVAIDGIIERLSLLREQTGENNEREEEGGQQATTGASN
LPPHPPTQEQEQQQQEPSFPVVVGTLCLAPRVFDRRRARAVVEEVENFKG
TCLVTWVHPRKHGEIVCRSWKKGRSCKFSGPDCRFSHGVEVPLSGLLPDD
GGGDSSWLASLRSGSQVLACYLDRVWYEATAEGPATPAAAAGAGASASSM
LLAVRFKGFEDDGPLSVPADSSHLAPLEAAVTEPEMDGVGGGNGGSSDGG
EPEEEEEEEESDLEDAWAADAAAAGRRGERDANM
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mRNA from alignment at Ecto-sp13_S_contig68:29949..33806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68.17739.1 ID=mRNA_Ecto-sp13_S_contig68.17739.1|Name=mRNA_Ecto-sp13_S_contig68.17739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3858bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68:29949..33806+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAAAGAAGGAAAGAAAACAACAGAGCTTGAATGCTGTTGTTGTGTCGA
GAAACTGCGCACCCGCGAAGCTCTCGAACGGTAGGCCCCAACACCTGATG
CTCTCGAACGCAGAAACAGAGAGGAAGTAAGTTCAATATGTGCCGGAGGT
TGCTGCTGACCCCGGTAGCGTCACAACCCCGCCGCGCACAGAGAGAGAGG
CTCATGACGGATCAAGGCGCGCTCGAGAGTCAGCTGGCGGGCCTCCAAGC
TCAGCGGGAGAAGCTCGTGGCGCTGGTGGGTGACGATCCGCACAGCCCGT
TGATTCCCCTTCAGGTATGTACAGCAGTACCGCGCAACACACGGGACTAT
CAACTCGAAAGTTGGTTTGCGTCAGAAACCACAAGAAACCATCTGTTGTA
GCAGGGGCTCCTCCTGCACATTACGGGGAATACCACCCCCCCGGGACGAT
TTCCACGCTGACATGTCATATACTCACGCTCCCGCCACAGGAGAGGGACG
AAATCCACGGATAGTCACATCAAGAGTCTTTCTATGACATCATCTTTCGA
TGCTATTTTGCCCAACAATCGGTAGCGCAACACTCTCCAGTTGTTGTGTG
TAGGGATCGAGCGATCCCGTTTCGTCTTGAGAAAGAGGGTGTGTTATTTA
ACGTCATGTGCTGTCGTAATGACAACGGAGGCGGAGGTCATCGTATCGGC
CGCAAGCACGGCATTGTTTCCACGAAGAGCACAGAAGGGGGAATGTGCGG
GATAGAGGCCGGAATACCTATCTCACAGAAAGCAGACTGCATGCACTGAA
TGAACAACTGCTGTTGGACAATAATGCGGCAGTACCGCAGCACACCAGCA
AACGAAGAGGACATGTGTTGTTGAAAGTCTTTGCAGTGACCAGGCAGGTA
TATCCTGCTGGATACTGGATTCATGAGTCTGTAGGCCTATACGCTTAAGT
ACATCAGGATACGGGTATAATCAAAACGCCTGTACGGTTTGTTGCACATG
TGACAACGCTGTAAAAGTGCGAGGCGTGGTTGCCCCGGATTTACCGTAGG
TTGCATGAGACATCACACCCCATGGACCGATTTTCAAAACTCGACCACTC
CACGAAGAGAATACCGAAACTGAAGAATACCCATTCGGAGAGTTCTCGAG
GAGATGGTTCCAACGCTGCCATTTTCGGCACCGGCACTTCTTGTCCTGCC
AATGTATCGAAAATCGATCCATGGGGTGTGATATCTTATGCAAGATACGG
TATGTCAACTCTCATCACAATTAGGAGTGACGAAGGCCGCAAGATAGGCG
CACAAAAACGATGGAAATATGCGGGATGACTTGAGAGCAATAACTAAAAC
TGGAGAGGGAAGCTCTCTCAGGAACAGGTTTACGGCGCTACACTACTGCT
TAGTATGTATGCCTTCGAGAGGACAAGAGAACATGCACGCGAGGAAGTAT
CCCTTCAGGAGGACAGGAGGACACATGCATGCGAAGAGTTCGTGGTGTTA
CGCAGTTTTTTTTTGTATTGGTGCAAGGCAGTAGGGTGCTATTTTCACAA
ATGGCGAGGAAGCAGCAGCAGCAGCAGGAGCAGCAGCCCTTCCATTCATC
CTCCATTCATCATCCGTCCAAACCGTCTCTCCAGCTCTTTACTGCAACAG
CTCGTCATGTCCATGAACGCCAAGCGATACCGTAAGGTTGCGAGTCAGCG
CACAGGGTTGCGAGCAATTTTCAAAGCGCAATTTCTCCACAACCAGGAGG
TGACTGACCACTGTCGAAAAGGGCGGTTCTGGAAAGATGTCATCGAGAGC
TTTCCTGAGAAGTATCAGGTGGCGCTCGCACCCTTCTGGTTGTGGAGAAA
TTCCGCTTTGAAAATCGATCGCACCTCTATGCGCTGACTCGCAACCTTGC
GATGTTCGTTCTTTCGACCCCCGCCCAAACACAAAGCAGGACCACAACAG
CGACGAAGGCAGCACTCGCGATACCTCCAGCAGCCGAACCCAGTAGACAG
ACAAACACCCCACGACCTCAACAACAACCCCGAATTCGCAAGGGACAACA
TTTCTACCAACGCCTGGATGCAGTATGCGCCGGCCGTTCGCAGGTACGTA
TACGCCGTCCGCCCCCGCCACGCGCCCGACCTCCTCTTTGCACACACAAC
TCACGCACGCATGCAGGAAGAGTTAGCAGTCGCGATCGACGGCATCATTG
AGAGGCTCTCGCTGTTGCGCGAGCAAACGGGAGAGAACAACGAGCGGGAG
GAGGAGGGGGGACAACAGGCAACAACCGGGGCCTCAAACCTCCCCCCTCA
CCCTCCCACCCAAGAACAAGAACAACAACAACAAGAGCCATCGTTCCCGG
TCGTGGTCGGCACCCTCTGCCTGGCCCCCCGGGTCTTCGACCGTCGGCGG
GCGCGCGCCGTGGTGGAGGAGGTTGAGAACTTCAAGGGCACCTGCCTCGT
GACCTGGGTGCACCCCCGAAAACACGGGGAGATAGTCTGCCGCTCCTGGA
AGAAGGTAACGGTCGGGGGGGGGGGCGGAAAGGTCCTTGTTTTTGCCTTG
TTGGTTGCTGTTCCCGTTTTTTCGTTTGCTTGGTTTCGACGGTTTCGTTC
TACCAAATGAGCAAGCGAGGGGGCAATTTTTTTTTTGCTTGTGTAGCAGT
AGGTTCAGCTAAAAACAGCAGGCATGCGAGGCAGGCAGGCCGCGGTTCTT
GGCGGTCAGAGGAATGTTCACGCCACTCGGCATCGAGGGTAAAGTGAAGC
CCCTCTTCTCGCTCGCGGACGCACCAAGCCCTCTCTTGTTCGTTTTGTGC
CTCCCGCACCGTGAGCTTGATCGATCCCGTGCCGTATACAAACCCACGCC
CTCGGACACAGAATATATATATATATCGCATCCAGAAGCAGATTACTACG
GAGCTACGCCTATGCTCGCGTGGTGTGGTGCTTTTAAACCGATGGTACCC
CGAAGAACAGCAACTGCCGCATTGTGTGGATAGCTGGCAGGGTGCAAGTT
TGGTCGGGTGATCAACGGTGTTTATTCCCAGGGAGAGTTGGGCGTTGGGT
GCGCGAGCAAGCGCCTCTCCCGTCCGCACTCGTCCCGTGTTTTCTCGTGT
CCGATTGTGCCTTGCTTCTTTGTACCCTTCTTTGTGTGAGAGCCTGTATG
TAGGTGTGCGTCCGTCTCTGTGCCTGGTGTTCTTCTTCCCCACCATTTTC
GTCGTCGTCCGATGCCATCTCTTGACGGTGGTCGCTGCTGCTCCCCCACC
GCCACCGCTGCTGATTCCTTGCGTCGTTACGTGCTAATGGTTTGCCTCTG
CTGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCACCGCATGCATG
CTCCTGGTCTCTCCGTTCCCAGGGAAGAAGCTGCAAGTTCTCCGGCCCGG
ACTGTCGGTTCTCTCACGGCGTCGAAGTGCCGCTGTCGGGCCTGCTTCCC
GATGACGGCGGAGGCGACAGTAGTTGGCTCGCGAGCCTGCGCTCTGGCTC
CCAGGTCCTCGCCTGCTACCTCGACCGCGTGTGGTACGAGGCCACCGCAG
AGGGCCCCGCCACGCCGGCGGCGGCGGCGGGGGCGGGGGCGTCGGCGTCA
TCGATGCTGCTGGCCGTGCGCTTCAAGGGTTTCGAGGACGACGGACCGTT
GTCCGTTCCCGCCGACAGCTCCCACCTGGCGCCGCTGGAGGCCGCTGTTA
CGGAGCCGGAGATGGACGGCGTTGGCGGCGGGAACGGGGGGTCTTCCGAC
GGCGGCGAACCCGAGGAAGAAGAAGAGGAGGAGGAGAGCGACCTGGAAGA
CGCGTGGGCAGCGGACGCGGCCGCCGCTGGCCGCCGTGGTGAACGAGACG
CTAACATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68:29949..33806+

>mRNA_Ecto-sp13_S_contig68.17739.1 ID=mRNA_Ecto-sp13_S_contig68.17739.1|Name=mRNA_Ecto-sp13_S_contig68.17739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68:29949..33806+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCGGAGGTTGCTGCTGACCCCGGTAGCGTCACAACCCCGCCGCGC
ACAGAGAGAGAGGCTCATGACGGATCAAGGCGCGCTCGAGAGTCAGCTGG
CGGGCCTCCAAGCTCAGCGGGAGAAGCTCGTGGCGCTGGTGGGTGACGAT
CCGCACAGCCCGTTGATTCCCCTTCAGGAAGAGTTAGCAGTCGCGATCGA
CGGCATCATTGAGAGGCTCTCGCTGTTGCGCGAGCAAACGGGAGAGAACA
ACGAGCGGGAGGAGGAGGGGGGACAACAGGCAACAACCGGGGCCTCAAAC
CTCCCCCCTCACCCTCCCACCCAAGAACAAGAACAACAACAACAAGAGCC
ATCGTTCCCGGTCGTGGTCGGCACCCTCTGCCTGGCCCCCCGGGTCTTCG
ACCGTCGGCGGGCGCGCGCCGTGGTGGAGGAGGTTGAGAACTTCAAGGGC
ACCTGCCTCGTGACCTGGGTGCACCCCCGAAAACACGGGGAGATAGTCTG
CCGCTCCTGGAAGAAGGGAAGAAGCTGCAAGTTCTCCGGCCCGGACTGTC
GGTTCTCTCACGGCGTCGAAGTGCCGCTGTCGGGCCTGCTTCCCGATGAC
GGCGGAGGCGACAGTAGTTGGCTCGCGAGCCTGCGCTCTGGCTCCCAGGT
CCTCGCCTGCTACCTCGACCGCGTGTGGTACGAGGCCACCGCAGAGGGCC
CCGCCACGCCGGCGGCGGCGGCGGGGGCGGGGGCGTCGGCGTCATCGATG
CTGCTGGCCGTGCGCTTCAAGGGTTTCGAGGACGACGGACCGTTGTCCGT
TCCCGCCGACAGCTCCCACCTGGCGCCGCTGGAGGCCGCTGTTACGGAGC
CGGAGATGGACGGCGTTGGCGGCGGGAACGGGGGGTCTTCCGACGGCGGC
GAACCCGAGGAAGAAGAAGAGGAGGAGGAGAGCGACCTGGAAGACGCGTG
GGCAGCGGACGCGGCCGCCGCTGGCCGCCGTGGTGAACGAGACGCTAACA
TG
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