prot_Ecto-sp13_S_contig6792.17725.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6792.17725.1
Unique Nameprot_Ecto-sp13_S_contig6792.17725.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length193
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6792.17725.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 2.230e-68
Identity = 179/191 (93.72%), Postives = 179/191 (93.72%), Query Frame = 0 
Query:    3 PPSFYPLGPPVMITWKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPDXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXXELIAAEEEGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSKAVGILRAMEGAG 193
            PP F P  PP  IT KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSP XXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXX  ELIAAEE GLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTS AVGILRAMEGAG
Sbjct:  617 PPPFPPRDPPSTITCKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXVQELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRAMEGAG 807
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BLAST of mRNA_Ecto-sp13_S_contig6792.17725.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 9.510e-58
Identity = 166/177 (93.79%), Postives = 167/177 (94.35%), Query Frame = 0 
Query:   18 KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPDXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXX-ELIAAEEEGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSKAVGILRAMEGAG 193
            KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELE     XXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXX  ELIAAEE GLPVSTPAYNAALKAFAIGKALQPGL+FFRRMQEEGRVPLDEQTHNIAIELCKECGDTS AVGILR MEGAG
Sbjct:  582 KADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXQVELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLEFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRTMEGAG 758
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6792.17725.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI2.230e-6893.72PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE9.510e-5893.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 111..193
e-value: 2.4E-11
score: 45.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 14..110
e-value: 2.1E-20
score: 75.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 55..104
e-value: 1.7E-13
score: 50.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 58..92
e-value: 6.5E-8
score: 30.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 126..160
score: 8.616
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 91..125
score: 7.355
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 162..193
score: 8.046
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 20..55
score: 8.035
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 56..90
score: 12.726
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 18..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6792contigEcto-sp13_S_contig6792:5522..7490 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6792.17725.1mRNA_Ecto-sp13_S_contig6792.17725.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6792 5516..7490 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6792.17725.1 ID=prot_Ecto-sp13_S_contig6792.17725.1|Name=mRNA_Ecto-sp13_S_contig6792.17725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MTPPSFYPLGPPVMITWKADTYTYVTAMKAVGAAGQWEIAVSLLAELREL
EGVSPDVYVYTAAISACSTAGRWEEALDLEGEMRRRGIKPNAYTVTSCIS
ALARGGEWQRAVQELIAAEEEGLPVSTPAYNAALKAFAIGKALQPGLDFF
RRMQEEGRVPLDEQTHNIAIELCKECGDTSKAVGILRAMEGAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat