mRNA_Ecto-sp13_S_contig6786.17713.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6786.17713.1
Unique NamemRNA_Ecto-sp13_S_contig6786.17713.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6786.17713.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 6.140e-84
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1
Query:    1 YSVFFDGNAFYGVGESVSPASRPSLSVNASSGCSAFSTTIDGVLTALDNDTTWNGVTASDIVSGGFTLNQSATAGDVTDGLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPELACVTDAGFVGYCEVTTLVEGNEVGGSFY 444
            YSVFFDGNAFYGVGESVSP SRPSLSVNASSGCS FSTTIDGVLTALDNDTTWNGVTASDIVSGGFTL+QSATA DVT+GLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPEL CVTDAGFVGYCEVTTLVEGNEVGGSFY
Sbjct: 15577 YSVFFDGNAFYGVGESVSPVSRPSLSVNASSGCSPFSTTIDGVLTALDNDTTWNGVTASDIVSGGFTLSQSATADDVTEGLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPELVCVTDAGFVGYCEVTTLVEGNEVGGSFY 15724          
BLAST of mRNA_Ecto-sp13_S_contig6786.17713.1 vs. uniprot
Match: A0A6H5JYH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH1_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 3.930e-83
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 1
Query:    7 VFFDGNAFYGVGESVSPASRPSLSVNASSGCSAFSTTIDGVLTALDNDTTWNGVTASDIVSGGFTLNQSATAGDVTDGLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPELACVTDAGFVGYCEVTTLVEGNEVGGSFY 444
            VFFDGNAFYGVGESVSP SRPSLSVNASSGCS FSTTIDGVLTALDNDTTWNGVT+SDIVSGGFTL+QSATA DVTDGLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPELACVTDAGFVGYCEVTTLVEGNEVGGSFY
Sbjct: 8165 VFFDGNAFYGVGESVSPVSRPSLSVNASSGCSPFSTTIDGVLTALDNDTTWNGVTSSDIVSGGFTLSQSATADDVTDGLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPELACVTDAGFVGYCEVTTLVEGNEVGGSFY 8310          
BLAST of mRNA_Ecto-sp13_S_contig6786.17713.1 vs. uniprot
Match: A0A7S3XK73_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK73_HETAK)

HSP 1 Score: 107 bits (267), Expect = 3.450e-24
Identity = 68/152 (44.74%), Postives = 91/152 (59.87%), Query Frame = 1
Query:    1 YSVFFDGNAFYGVGESVSPASRPSLSVNASSGCSAFSTTIDGVLTALD--NDTTWN-GVTASDIVSGGFTLNQSATAGDVTDGLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPELACVTDAGF-VGYCEVTTLVEGNEVGGSFY 444
            YSVFFDGNA +        +   ++++N + GCSAFSTTID V+T L   N TT+   V  ++I   G + + +A A  + + L +LP V   ++     ADDQ G SWT SF +N G VP + C  +A F VG CEVTTLV+GN VGG FY
Sbjct:  119 YSVFFDGNAMHISDNETDTSVNFTVALNLT-GCSAFSTTIDNVVTGLSSLNSTTYGYEVAITEINKAGTSFDVNADADSIGEVLGLLPPVEESVVIVEAAADDQNGKSWTFSFVNNDGDVPSMVCNKEASFTVGDCEVTTLVQGNMVGGIFY 269          
BLAST of mRNA_Ecto-sp13_S_contig6786.17713.1 vs. uniprot
Match: A0A836CHM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHM4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.120e-18
Identity = 56/151 (37.09%), Postives = 83/151 (54.97%), Query Frame = 1
Query:    1 YSVFFDGNAFYGVGESVSPASRPSLSVNAS---SGCSAFSTTIDGVLTALDNDTTWNGVTASDIVSGGFTLNQSATAGDVTDGLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPELACVTDAGFVGYCEVTTLVEGNEVGGSFY 444
            ++V FDGNA + V    +PA+ P +   A      C+  +T +D V   L+       + A +I S G  +  +A   ++ + LS LP+V   +L Y   AD+  G +W +SFS+N G VP L C+ +A FVG C VTTL+ GN +GG FY
Sbjct:  612 WTVLFDGNAMHDV--HAAPAAAPVMDARAGMVLGPCTPLTTVVDHVSYVLNPVVHDYTLKAEEIGSKGLPIPSTADRDEMAEQLSYLPAVVPEVLVYTSDADEHDGLTWYLSFSNNDGDVPPLICLPEATFVGDCSVTTLINGNTIGGHFY 760          
BLAST of mRNA_Ecto-sp13_S_contig6786.17713.1 vs. uniprot
Match: A0A225X253_9STRA (Titin isoform N2B n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X253_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.400e-9
Identity = 51/157 (32.48%), Postives = 79/157 (50.32%), Query Frame = 1
Query:    1 YSVFFDGNAFYGVGESVSPASRPSLSVNASSGCSAFSTTIDGVLTALDNDTTWNGVTASDIVSGGFTLNQS------ATAGDVTDGLSVLPSVTSPMLTYRGVADDQQGNSWTMSFSSNGGAVPELACVTD-AGFVGY---CEVTTLVEGNEVGGSF 441
            Y ++F GN  YG        + P +  N  +GC+AF T  + VLT ++N      V  + +  GGF  + +      ATA  +T  L+ LP V   +L  + + D+Q G+ WT++F  + G +P+L C  D A F      C+  TL +GN + GSF
Sbjct: 5539 YRIYFHGNGVYG-------NTPPLMWPNTDTGCAAFQTLENNVLTVVNNGK----VIPTVLDYGGFDSHNTFVDAAHATATQLTADLNQLP-VFGDVLVEQTLTDEQGGHIWTVAFEDSQGNLPQLICAIDPATFTATGSGCDTDTLTDGNVLSGSF 5683          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6786.17713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNA6_ECTSI6.140e-8495.95Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
A0A6H5JYH1_9PHAE3.930e-8396.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XK73_HETAK3.450e-2444.74Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A836CHM4_9STRA2.120e-1837.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225X253_9STRA7.400e-932.48Titin isoform N2B n=1 Tax=Phytophthora megakarya T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6786contigEcto-sp13_S_contig6786:83..712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score279.3
Seed ortholog evalue1.1e-72
Seed eggNOG ortholog2880.D7FNA6
Model size446
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
EC2.7.11.1
Cds size444
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.47537-CDS-Ecto-sp13_S_contig6786:83..1281681463932.47537-CDS-Ecto-sp13_S_contig6786:83..128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6786 84..128 -
1681463932.4922369-CDS-Ecto-sp13_S_contig6786:313..7121681463932.4922369-CDS-Ecto-sp13_S_contig6786:313..712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6786 314..712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6786.17713.1prot_Ecto-sp13_S_contig6786.17713.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6786 84..712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6786.17713.1

>prot_Ecto-sp13_S_contig6786.17713.1 ID=prot_Ecto-sp13_S_contig6786.17713.1|Name=mRNA_Ecto-sp13_S_contig6786.17713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
YSVFFDGNAFYGVGESVSPASRPSLSVNASSGCSAFSTTIDGVLTALDND
TTWNGVTASDIVSGGFTLNQSATAGDVTDGLSVLPSVTSPMLTYRGVADD
QQGNSWTMSFSSNGGAVPELACVTDAGFVGYCEVTTLVEGNEVGGSFY
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mRNA from alignment at Ecto-sp13_S_contig6786:83..712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6786.17713.1 ID=mRNA_Ecto-sp13_S_contig6786.17713.1|Name=mRNA_Ecto-sp13_S_contig6786.17713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6786:83..712- (Ectocarpus species13 EcNAP12_S_4_19m)
TACAGCGTTTTCTTCGACGGAAACGCCTTCTACGGGGTCGGAGAGTCCGT GTCCCCGGCGTCCCGCCCTTCTCTTTCCGTCAACGCCTCCTCCGGGTGTT CCGCGTTCTCGACTACCATCGACGGAGTTTTGACCGCCCTCGACAACGAC ACCACCTGGAACGGAGTGACCGCCTCCGATATAGTCAGCGGCGGTTTCAC CCTCAACCAATCAGCTACCGCGGGTGACGTGACCGACGGGCTATCGGTTC TGCCGTCGGTGACATCTCCGATGCTGACGTACCGCGGCGTCGCGGATGAC CAGCAAGGGAATTCTTGGACCATGTCGTTCTCGAGCAACGGCGGGGCGGT GCCCGAGCTGGCGTGCGTCACGGATGCCGGCTTCGTCGGCTACTGCGAGG TGAGTGGTATTGGCTGGTTCGAAAGGTTTGTGAGGTGTGCAGACTTGTCA TCGCTTCAATGGTAAGTGGAGACGCCGCTTTCGTGAGTCCGTGGAGCTGA CTGATTTTGCATTTTTTTCAGAGGTTTGAAGCACGGCCTCTCGTCTGAAC GCTTCGTCCGTCGTCACGCCTGCCCGTTTCACAGGTAACCACGCTCGTAG AGGGCAACGAGGTTGGCGGCAGCTTCTACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6786:83..712-

>mRNA_Ecto-sp13_S_contig6786.17713.1 ID=mRNA_Ecto-sp13_S_contig6786.17713.1|Name=mRNA_Ecto-sp13_S_contig6786.17713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6786:83..712- (Ectocarpus species13 EcNAP12_S_4_19m)
TACAGCGTTTTCTTCGACGGAAACGCCTTCTACGGGGTCGGAGAGTCCGT
GTCCCCGGCGTCCCGCCCTTCTCTTTCCGTCAACGCCTCCTCCGGGTGTT
CCGCGTTCTCGACTACCATCGACGGAGTTTTGACCGCCCTCGACAACGAC
ACCACCTGGAACGGAGTGACCGCCTCCGATATAGTCAGCGGCGGTTTCAC
CCTCAACCAATCAGCTACCGCGGGTGACGTGACCGACGGGCTATCGGTTC
TGCCGTCGGTGACATCTCCGATGCTGACGTACCGCGGCGTCGCGGATGAC
CAGCAAGGGAATTCTTGGACCATGTCGTTCTCGAGCAACGGCGGGGCGGT
GCCCGAGCTGGCGTGCGTCACGGATGCCGGCTTCGTCGGCTACTGCGAGG
TAACCACGCTCGTAGAGGGCAACGAGGTTGGCGGCAGCTTCTAC
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