mRNA_Ecto-sp13_S_contig67810.17707.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67810.17707.1
Unique NamemRNA_Ecto-sp13_S_contig67810.17707.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67810.17707.1 vs. uniprot
Match: D7FSW2_ECTSI (Glycosyl transferase, family 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW2_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.040e-47
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 GLRRAEAGPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDNTMDAVASMKLDVK 237
            GLRRAEAGPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKD+TMDAVASMKLDVK
Sbjct:   19 GLRRAEAGPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMDAVASMKLDVK 97
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BLAST of mRNA_Ecto-sp13_S_contig67810.17707.1 vs. uniprot
Match: A0A6H5L731_9PHAE (Glyco_trans_2-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L731_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 3.480e-44
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 GLRRAEAGPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDNTMDAVASMKLDVK 237
            GLRRAEAGPRLVPN ECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKD+TMDAVASMKLDVK
Sbjct:   19 GLRRAEAGPRLVPNTECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMDAVASMKLDVK 97
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BLAST of mRNA_Ecto-sp13_S_contig67810.17707.1 vs. uniprot
Match: A0A835ZCJ3_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-7
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   31 LVPNAECHVG-EGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDNTM 204
            + P +   +G +G ++V++PAYNEG G+  TLA +    +   LVE+++VD GC D+TM
Sbjct:   37 ITPGSGPQIGKDGLITVIIPAYNEGAGIADTLAALSAATEATGLVEVVIVDGGCSDDTM 95
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BLAST of mRNA_Ecto-sp13_S_contig67810.17707.1 vs. uniprot
Match: A0A7S3PIZ7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PIZ7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.800e-6
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   52 HVGEGFVSVVVPAYNEG-DGVKLTLATIDELAQDKSLVEIIVVDAGCKDNTMDAV--ASMKLDVK 237
            H     VSVV+P YNEG + +   L  +D+    KS  E+IVVDAGC D+TM+A+  A M++ V+
Sbjct:   68 HTSVSKVSVVIPVYNEGAENLIQNLERLDQSTLGKSCTEVIVVDAGCSDDTMEALVKADMRIPVR 132
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BLAST of mRNA_Ecto-sp13_S_contig67810.17707.1 vs. uniprot
Match: A0A0M0JLK4_9EUKA (Glycosyl transferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLK4_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 1.710e-5
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:   70 VSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDNTMDAVASMKLDVK 237
            +SVVVPA+NE   + + L T++  A     V+++VVDAGCKD+TM  V +     K
Sbjct:   78 ISVVVPAFNEARSIGMCLETLERHASSLKRVQVVVVDAGCKDDTMAIVTAWAAQTK 133
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BLAST of mRNA_Ecto-sp13_S_contig67810.17707.1 vs. uniprot
Match: A0A7S3Y2L9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2L9_HETAK)

HSP 1 Score: 47.8 bits (112), Expect = 7.090e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   67 FVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDNTM 204
             +SVV+PA+NE   +   L  + + A++  L+E++VVDAGC DNTM
Sbjct:   52 ILSVVIPAFNEERSILKVLNVVRDRAENPELLEVVVVDAGCIDNTM 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67810.17707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSW2_ECTSI3.040e-4798.73Glycosyl transferase, family 2 n=1 Tax=Ectocarpus ... [more]
A0A6H5L731_9PHAE3.480e-4497.47Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A835ZCJ3_9STRA1.060e-740.68Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A7S3PIZ7_9STRA4.800e-644.62Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A0M0JLK4_9EUKA1.710e-542.86Glycosyl transferase n=1 Tax=Chrysochromulina tobi... [more]
A0A7S3Y2L9_HETAK7.090e-545.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67810contigEcto-sp13_S_contig67810:1..631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size237
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionGlycosyl transferase, family 2
Ec32 orthologEc-27_006590.1
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.1625586-CDS-Ecto-sp13_S_contig67810:0..901681463932.1625586-CDS-Ecto-sp13_S_contig67810:0..90Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67810 1..90 -
1681463932.178275-CDS-Ecto-sp13_S_contig67810:484..6311681463932.178275-CDS-Ecto-sp13_S_contig67810:484..631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67810 485..631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67810.17707.1prot_Ecto-sp13_S_contig67810.17707.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67810 1..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67810.17707.1

>prot_Ecto-sp13_S_contig67810.17707.1 ID=prot_Ecto-sp13_S_contig67810.17707.1|Name=mRNA_Ecto-sp13_S_contig67810.17707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
GLRRAEAGPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQD
KSLVEIIVVDAGCKDNTMDAVASMKLDVK
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mRNA from alignment at Ecto-sp13_S_contig67810:1..631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67810.17707.1 ID=mRNA_Ecto-sp13_S_contig67810.17707.1|Name=mRNA_Ecto-sp13_S_contig67810.17707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67810:1..631- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCTGAGGCGAGCGGAGGCCGGGCCAAGACTGGTCCCAAACGCTGAGTG
CCACGTTGGCGAAGGGTTCGTATCGGTCGTGGTGCCTGCGTACAACGAGG
GAGATGGGGTCAAGTTGACGCTCGCCACCATCGATGAGCTGGCCCAGGTA
CGCTGCACGCATTCGCCCCCTCCCCCGCGAGACCGGCACGCAGTCAGCTG
TTAGCCAGATCCATCCCAATGAGCTACATCGTGGGTTTCTCGAATGCCTA
AAGTACCAGCAGCTTGTTCTCTTGCAGATCCTGGCCACTCGCCGAGGTCT
GCGGGCTGGATGAGGATTTTGTCCCATCCCACCGCCAGCTAGACCTACAA
TCCCATGCTCTGTGCCAGTGTGGGTACTATACCACGCCCCGTGTATCCAC
GAACAAGTAACTACCGCTCTTCATCTCGAGGTATGAATCGACGCTGCATT
CGCCCACGAGTGCACTGGTGATCCGTTTCCCTTTTTGTCGCTTCGGTCGT
GTGTCGTGGCCACCTGCTGCTGCGTGGGTGTCGCCACAAAGGACAAGTCG
CTGGTTGAGATTATCGTTGTCGATGCCGGTTGCAAAGACAACACAATGGA
CGCCGTCGCCTCCATGAAGCTCGACGTCAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67810:1..631-

>mRNA_Ecto-sp13_S_contig67810.17707.1 ID=mRNA_Ecto-sp13_S_contig67810.17707.1|Name=mRNA_Ecto-sp13_S_contig67810.17707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67810:1..631- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCTGAGGCGAGCGGAGGCCGGGCCAAGACTGGTCCCAAACGCTGAGTG
CCACGTTGGCGAAGGGTTCGTATCGGTCGTGGTGCCTGCGTACAACGAGG
GAGATGGGGTCAAGTTGACGCTCGCCACCATCGATGAGCTGGCCCAGGAC
AAGTCGCTGGTTGAGATTATCGTTGTCGATGCCGGTTGCAAAGACAACAC
AATGGACGCCGTCGCCTCCATGAAGCTCGACGTCAAA
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