prot_Ecto-sp13_S_contig678.17702.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig678.17702.1
Unique Nameprot_Ecto-sp13_S_contig678.17702.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length134
Homology
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: D8LNC2_ECTSI (COP9 signalosome complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNC2_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 6.790e-64
Identity = 122/145 (84.14%), Postives = 122/145 (84.14%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQ------------VLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCGKVCPAAGGPAMSEAGATAAVGSXXXXXAQTRTAVALERWAESLRSLNTNIAAKVDYR 133
            MGDPFIKLYIDDILRTMRTQ            VLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCGKVCPAAGGPA SEAGA      XXXXX    TAVALERWAESLRSLNTNIAAKVDYR
Sbjct:  366 MGDPFIKLYIDDILRTMRTQKVSIMSNNTHFQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCGKVCPAAGGPASSEAGAXXXXXXXXXXXXXXXTAVALERWAESLRSLNTNIAAKVDYR 510          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: C3YNP2_BRAFL (PCI domain-containing protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3YNP2_BRAFL)

HSP 1 Score: 95.1 bits (235), Expect = 7.690e-23
Identity = 57/130 (43.85%), Postives = 82/130 (63.08%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCGKVCPAAGGPAMSEAGATAAVGSXXXXXAQTRTAVALERWAESLRSLNTNIAAKV 130
            M DPFI+ +I+D+LR +RTQVL+K I PYTR+ +P++A ELN I V++VE LLVSCILD  ++G+IDQVNQ++   +          S  GA                  AL+RW+E ++SL+ +IA K+
Sbjct:    1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFIAKELN-IDVSEVESLLVSCILDSTINGRIDQVNQLLELDR----------STHGAARYT--------------ALDRWSEQIQSLHQSIANKM 105          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: A0A2G2VNP3_CAPBA (PCI domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VNP3_CAPBA)

HSP 1 Score: 94.7 bits (234), Expect = 4.510e-21
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCG 76
            M DPFI+ YI+D+LR +RTQVLLK I PYTR+++P+++ ELN +P  DVE+LLVS ILD ++ G IDQVN+++ CG
Sbjct:  105 MDDPFIRNYIEDLLRNVRTQVLLKIIKPYTRIRIPFISKELN-VPEKDVEELLVSLILDNRIHGHIDQVNRLLECG 179          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: A0A2H5PEP2_CITUN (PCI domain-containing protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5PEP2_CITUN)

HSP 1 Score: 91.3 bits (225), Expect = 6.460e-21
Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVV 73
            M DPFI+ YI+D+L+ +RTQVLLK I PYTR+++P+++ ELN +P  DVE LLVS ILD ++DG IDQVN+++
Sbjct:   36 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPEKDVEQLLVSLILDNRIDGHIDQVNRLL 107          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: A0A1S3I377_LINUN (COP9 signalosome complex subunit 2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I377_LINUN)

HSP 1 Score: 94.4 bits (233), Expect = 7.160e-21
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCGKVCPAAGGPAMSEAGATAAVGSXXXXXAQTRTAVALERWAESLRSLNTNIAAKV 130
            M DPFI+ +I+D+LR +RTQVL+K I PYTR+ +P+++ ELN I VT+VE+LLVSCILD  + G+IDQVNQV+   +           EA  TA                AL++W E L+SL+  +  K+
Sbjct:  165 MEDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISKELN-IDVTEVENLLVSCILDSTIHGRIDQVNQVLELSR-----------EAQGTARYS-------------ALDKWTEQLQSLHQAVVNKM 269          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: A0A2P6VF13_9CHLO (COP9 signalosome complex subunit 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VF13_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-20
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCGKVCPAAGGPAMSEAGATAAVGSXXXXXAQTRTAVALERWAESLRSLNTNIAAKV 130
            MGDPFI  Y+ D+L  +RTQV+LKAI PYTRV++P++A +LN +P TDVE LL+S ILDG+V G+IDQV+Q++                               Q     AL++WA  L+SL+  + AK+
Sbjct:  333 MGDPFISQYMRDLLANVRTQVVLKAIRPYTRVRIPFIASQLN-VPATDVEQLLISLILDGRVAGRIDQVHQLL------------------------ELDTPLEQAAKYSALDKWAAQLQSLHNLLVAKL 437          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: A0A4W5LJW0_9TELE (COP9 signalosome complex subunit 2 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5LJW0_9TELE)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-20
Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVV 73
            M DPFI+ +I+++LR +RTQVL+K I PYTR+ +P+++ ELN I V DVE LLV CILDG ++G+IDQVNQ++
Sbjct:   60 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN-IDVCDVESLLVQCILDGTINGRIDQVNQLL 131          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: A0A7S3W5Y9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W5Y9_9SPIT)

HSP 1 Score: 95.5 bits (236), Expect = 1.760e-20
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVL 74
            MGD FIKLY+DD+L+ +RTQVLL+ I PYTR++L ++A ELN IP+ +VEDLLVS ILDG +DG +DQ+  ++L
Sbjct:  329 MGDAFIKLYLDDLLKNIRTQVLLRVIRPYTRIRLSFIATELN-IPLNEVEDLLVSLILDGHIDGHVDQIGSLLL 401          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: A0A2G2XXY6_CAPAN (COP9 signalosome complex subunit 2 (Fragment) n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2XXY6_CAPAN)

HSP 1 Score: 95.5 bits (236), Expect = 1.780e-20
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCG 76
            M DPFI+ YI+D+LR +RTQVLLK I PYTR+++P+++ ELN +P  DVE+LLVS ILD ++DG IDQVN ++ CG
Sbjct:  332 MDDPFIRNYIEDLLRKVRTQVLLKLIKPYTRIRIPFISKELN-VPEKDVENLLVSLILDNRIDGHIDQVNGLLECG 406          
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Match: A0A2K3E6P1_CHLRE (PCI domain-containing protein n=10 Tax=Chlamydomonadales TaxID=3042 RepID=A0A2K3E6P1_CHLRE)

HSP 1 Score: 95.5 bits (236), Expect = 1.830e-20
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 0
Query:    1 MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCG 76
            M DPFI+ Y++D+LR +RTQVLLK I PYTRV++P++A +LN IP  DVE LLVS ILDG+V G IDQVNQ++  G
Sbjct:  333 MDDPFIRNYVEDLLRKIRTQVLLKIIQPYTRVRIPFIAQKLN-IPAPDVEQLLVSLILDGRVAGNIDQVNQILEVG 407          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig678.17702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC2_ECTSI6.790e-6484.14COP9 signalosome complex subunit 2 n=2 Tax=Ectocar... [more]
C3YNP2_BRAFL7.690e-2343.85PCI domain-containing protein n=4 Tax=Branchiostom... [more]
A0A2G2VNP3_CAPBA4.510e-2159.21PCI domain-containing protein n=1 Tax=Capsicum bac... [more]
A0A2H5PEP2_CITUN6.460e-2158.90PCI domain-containing protein n=1 Tax=Citrus unshi... [more]
A0A1S3I377_LINUN7.160e-2143.85COP9 signalosome complex subunit 2 n=1 Tax=Lingula... [more]
A0A2P6VF13_9CHLO1.300e-2042.31COP9 signalosome complex subunit 2 n=1 Tax=Micract... [more]
A0A4W5LJW0_9TELE1.680e-2058.90COP9 signalosome complex subunit 2 n=1 Tax=Hucho h... [more]
A0A7S3W5Y9_9SPIT1.760e-2060.81Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A2G2XXY6_CAPAN1.780e-2060.53COP9 signalosome complex subunit 2 (Fragment) n=2 ... [more]
A0A2K3E6P1_CHLRE1.830e-2063.16PCI domain-containing protein n=10 Tax=Chlamydomon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00753PINTcoord: 8..94
e-value: 4.2E-10
score: 49.6
NoneNo IPR availableGENE3D1.25.40.570coord: 1..83
e-value: 1.9E-25
score: 91.7
NoneNo IPR availablePANTHERPTHR1067826S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2coord: 1..129
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 8..94
e-value: 4.2E-10
score: 49.6
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 3..75
e-value: 1.6E-12
score: 47.8
IPR000717Proteasome component (PCI) domainPROSITEPS50250PCIcoord: 1..80
score: 17.282
IPR037750COP9 signalosome complex subunit 2PANTHERPTHR10678:SF3COP9 SIGNALOSOME COMPLEX SUBUNIT 2coord: 1..129
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 2..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig678contigEcto-sp13_S_contig678:4011..5510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig678.17702.1mRNA_Ecto-sp13_S_contig678.17702.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig678 3788..6885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig678.17702.1 ID=prot_Ecto-sp13_S_contig678.17702.1|Name=mRNA_Ecto-sp13_S_contig678.17702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MGDPFIKLYIDDILRTMRTQVLLKAIAPYTRVKLPYLAGELNDIPVTDVE
DLLVSCILDGKVDGKIDQVNQVVLCGKVCPAAGGPAMSEAGATAAVGSGS
GSRAQTRTAVALERWAESLRSLNTNIAAKVDYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR037750COPS2
IPR036390WH_DNA-bd_sf