mRNA_Ecto-sp13_S_contig67746.17697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67746.17697.1
Unique NamemRNA_Ecto-sp13_S_contig67746.17697.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.420e-18
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:   19 VWQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRT 156
            V QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRT
Sbjct:  264 VAQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRT 309
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.260e-18
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRT 156
            VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRT
Sbjct:   56 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRT 98
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.010e-9
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   25 QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRT 156
            QVL+ GTLSDK++ALT++ +ESPVHRLA LD L++L  K +RRT
Sbjct:  238 QVLKSGTLSDKISALTMRCKESPVHRLADLDKLVELATKHDRRT 281
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A7S2GVG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVG6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.600e-8
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   25 QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERR 153
            Q+LR GTL+D++AA+TL+VQ+SP+H L+ LDGLL LG K   R
Sbjct:   74 QMLRSGTLADRIAAMTLRVQQSPLHELSSLDGLLKLGQKGNHR 116
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A060T4W5_BLAAD (ARAD1B03190p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T4W5_BLAAD)

HSP 1 Score: 55.5 bits (132), Expect = 2.550e-7
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   25 QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRT----VSNVSSSFTG 186
            Q+L  GTLSDK++ALTL +QESP+H +  LD LL L  KK RRT    V+ +   F G
Sbjct:  267 QLLSSGTLSDKISALTLLIQESPLHSIKYLDQLLGLCRKKARRTALQGVAAIKDLFVG 324
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A1R0GLG4_9FUNG (Ribosome biogenesis protein MAK21 n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GLG4_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 2.550e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   19 VWQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTVSNVSSSF 180
            V  +LR GTLSDK++ALTL VQESP+H +A L+ L+ +  KK RR      SS 
Sbjct:  249 VSSILRTGTLSDKISALTLLVQESPIHNMASLNTLMGMARKKHRREAIMAVSSL 302
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A0D2WV36_CAPO3 (CEBPZ CCAAT/enhancer-binding protein zeta n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WV36_CAPO3)

HSP 1 Score: 55.1 bits (131), Expect = 3.500e-7
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERR 153
            V++ GTL+DK+AAL +QVQESP+H+L+ LD LL++  KK +R
Sbjct:  454 VMQSGTLTDKLAALVVQVQESPIHKLSTLDTLLNMAAKKGKR 495
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A0B7B9Z8_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B9Z8_9EUPU)

HSP 1 Score: 54.7 bits (130), Expect = 4.180e-7
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERR 153
            VL  GTL+DK+AALTL +QESPVH LA LD L+ +  KK RR
Sbjct:  236 VLVSGTLTDKMAALTLLIQESPVHNLASLDSLISMARKKGRR 277
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A7S4ECK5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECK5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.730e-7
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   25 QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLL 126
            QVLR GT++DKVAA+TL VQESP+HRL  LD LL
Sbjct:   78 QVLRSGTMADKVAAMTLMVQESPIHRLETLDSLL 111
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BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Match: A0A1Y2HZ83_9FUNG (CBF/Mak21 family-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HZ83_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 4.760e-7
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTVSNV 168
            +L GGTLSD+V+ALTL VQ SPVH +  L+ L +L  KK RR V+ V
Sbjct:  104 ILSGGTLSDRVSALTLLVQSSPVHNMLALEQLFNLAKKKNRRMVTLV 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67746.17697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI1.420e-1897.83CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5C9_9PHAE9.260e-18100.00Reverse transcriptase domain-containing protein n=... [more]
A0A835ZC94_9STRA6.010e-963.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GVG6_9STRA4.600e-860.47Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A060T4W5_BLAAD2.550e-751.72ARAD1B03190p n=1 Tax=Blastobotrys adeninivorans Ta... [more]
A0A1R0GLG4_9FUNG2.550e-751.85Ribosome biogenesis protein MAK21 n=1 Tax=Smittium... [more]
A0A0D2WV36_CAPO33.500e-757.14CEBPZ CCAAT/enhancer-binding protein zeta n=1 Tax=... [more]
A0A0B7B9Z8_9EUPU4.180e-764.29Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A7S4ECK5_9STRA4.730e-773.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Y2HZ83_9FUNG4.760e-757.45CBF/Mak21 family-domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67746contigEcto-sp13_S_contig67746:449..646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score87.4
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
Model size198
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
Cds size198
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463930.9986088-CDS-Ecto-sp13_S_contig67746:448..6461681463930.9986088-CDS-Ecto-sp13_S_contig67746:448..646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67746 449..646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67746.17697.1prot_Ecto-sp13_S_contig67746.17697.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67746 449..646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67746.17697.1

>prot_Ecto-sp13_S_contig67746.17697.1 ID=prot_Ecto-sp13_S_contig67746.17697.1|Name=mRNA_Ecto-sp13_S_contig67746.17697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MRCFWGVWQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKER
RTVSNVSSSFTGCCC*
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mRNA from alignment at Ecto-sp13_S_contig67746:449..646-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67746.17697.1 ID=mRNA_Ecto-sp13_S_contig67746.17697.1|Name=mRNA_Ecto-sp13_S_contig67746.17697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67746:449..646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATGTTTTTGGGGGGTGTGGCAGGTGTTGCGAGGCGGGACTCTGTC
GGACAAGGTGGCGGCGCTGACCCTCCAGGTGCAGGAGAGCCCCGTGCACC
GCCTGGCCGTACTGGACGGTCTGCTGGACCTCGGCCTCAAGAAAGAGCGG
CGCACGGTAAGCAACGTGTCGAGCTCGTTTACGGGCTGCTGTTGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67746:449..646-

>mRNA_Ecto-sp13_S_contig67746.17697.1 ID=mRNA_Ecto-sp13_S_contig67746.17697.1|Name=mRNA_Ecto-sp13_S_contig67746.17697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67746:449..646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATGTTTTTGGGGGGTGTGGCAGGTGTTGCGAGGCGGGACTCTGTC
GGACAAGGTGGCGGCGCTGACCCTCCAGGTGCAGGAGAGCCCCGTGCACC
GCCTGGCCGTACTGGACGGTCTGCTGGACCTCGGCCTCAAGAAAGAGCGG
CGCACGGTAAGCAACGTGTCGAGCTCGTTTACGGGCTGCTGTTGTTAA
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