mRNA_Ecto-sp13_S_contig12082.1770.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12082.1770.1
Unique NamemRNA_Ecto-sp13_S_contig12082.1770.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12082.1770.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.360e-59
Identity = 98/117 (83.76%), Postives = 100/117 (85.47%), Query Frame = 1 
Query:    1 TFGGTIANIGGDITANAGSLFFDDFAENSGDGGLGGAIYNYGGGIVKLTGSTTFRQNYGNWGGAVFNSAVPTAYFTAEDESYVMPTISYPEDTVFEDNYGQYCNDFASDFDEETCGL 351
            TFGGTIANIGGD+TANAGSLFFD FAENSGDGGL             LTGSTTFRQNYGNWGGAVFNSAVP AYFTAEDESYVMPTISYPEDT+FEDN  QYCNDFASDFDEETCGL
Sbjct:  262 TFGGTIANIGGDVTANAGSLFFDGFAENSGDGGLXXXXXXXXXXXXXLTGSTTFRQNYGNWGGAVFNSAVPNAYFTAEDESYVMPTISYPEDTIFEDNDAQYCNDFASDFDEETCGL 378
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BLAST of mRNA_Ecto-sp13_S_contig12082.1770.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 7.630e-17
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    7 GGTIANIGGDITANAGSLFFDDFAENSGDGGLGGAIYNYGGGIVKLTGSTTFRQNYGNWGGAVFNSAVPTAYFTAEDESYVMPTISYPEDTVFEDNYGQYCNDFASDFDEETC 345
            GG + N GG +  NAGSLF  + A  SGDGGLGGAIYN   G+V L GSTTFR+N    GGA++ S         E+        ++P+DTVFEDN  ++C D  +  D + C
Sbjct:  273 GGGLMNDGGVVNINAGSLFELNGASGSGDGGLGGAIYNTNAGVVTLMGSTTFRENAAFMGGAIYTSDGD------EENGEPASVTTFPDDTVFEDNSAEHCPDVHNG-DSDNC 378
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BLAST of mRNA_Ecto-sp13_S_contig12082.1770.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 7.130e-16
Identity = 52/113 (46.02%), Postives = 64/113 (56.64%), Query Frame = 1 
Query:    7 GGTIANIGGDITANAGSLFFDDFAENSGDGGLGGAIYNYGGGIVKLTGSTTFRQNYGNWGGAVFNSAVPTAYFTAEDESYVMPTISYPEDTVFEDNYGQYCNDFASDFDEETC 345
            GG + N GG +  NAGSLF  + A  SGDGGLGGAIYN   G V L GSTTFR+N    GGA++      A   A   +      ++P+DTVFEDN   +C D   D D + C
Sbjct:  273 GGGLMNYGGVVNINAGSLFELNGASGSGDGGLGGAIYNGNEGAVTLMGSTTFRENAAYEGGAIYTDDGSVANGEAASVT------TFPDDTVFEDNRADFCPD-VFDGDNDNC 378
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12082.1770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KTD4_9PHAE1.360e-5983.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLJ6_ECTSI7.630e-1745.13Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI7.130e-1646.02Asn/thr-rich large protein family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12082contigEcto-sp13_S_contig12082:3700..5015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size563
Hectar predicted targeting categoryother localisation
Exons3
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.7722611-UTR-Ecto-sp13_S_contig12082:3699..39081681462641.7722611-UTR-Ecto-sp13_S_contig12082:3699..3908Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12082 3700..3908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.7811038-CDS-Ecto-sp13_S_contig12082:3908..39591681462641.7811038-CDS-Ecto-sp13_S_contig12082:3908..3959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12082 3909..3959 -
1681462641.7898939-CDS-Ecto-sp13_S_contig12082:4447..46101681462641.7898939-CDS-Ecto-sp13_S_contig12082:4447..4610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12082 4448..4610 -
1681462641.799163-CDS-Ecto-sp13_S_contig12082:4875..50151681462641.799163-CDS-Ecto-sp13_S_contig12082:4875..5015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12082 4876..5015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12082.1770.1prot_Ecto-sp13_S_contig12082.1770.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12082 3909..5015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12082.1770.1

>prot_Ecto-sp13_S_contig12082.1770.1 ID=prot_Ecto-sp13_S_contig12082.1770.1|Name=mRNA_Ecto-sp13_S_contig12082.1770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
TFGGTIANIGGDITANAGSLFFDDFAENSGDGGLGGAIYNYGGGIVKLTG
STTFRQNYGNWGGAVFNSAVPTAYFTAEDESYVMPTISYPEDTVFEDNYG
QYCNDFASDFDEETCGL*
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mRNA from alignment at Ecto-sp13_S_contig12082:3700..5015-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12082.1770.1 ID=mRNA_Ecto-sp13_S_contig12082.1770.1|Name=mRNA_Ecto-sp13_S_contig12082.1770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1316bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12082:3700..5015- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTTTGGCGGGACCATCGCCAACATCGGCGGCGACATCACCGCCAATGC
CGGCAGCCTCTTCTTTGACGATTTCGCCGAAAACTCGGGGGATGGCGGCT
TGGGGGGTGCAATCTACAACTACGGAGGCGGCATCGTCAAGTGAGTACGA
ACAACGCGTGGACGGGGGAAAAATGCCGATCCGTCATGAGGATGATCCCG
CCTTGTGTCCTGGTGAACTCCCGATAGGCGCCGCCTGCGAGACGTTCGCA
ACTGAAACAGGAGGCTTTCCTCGTCCATTTAACTTCCTGCCTGATCTTCT
GAGAGCCTGTCTGTCGTGCGATCGATCGGACGATACACGAAGGTTTTTCA
AGCTTCTCTCAAAACCAGTTTGCTACCCCGGCTTTGACTGTACGGTATAC
TCCAGGCTCACGGGCTCGACCACCTTCAGGCAGAACTACGGTAACTGGGG
GGGTGCCGTCTTCAACTCTGCGGTGCCTACCGCCTACTTCACGGCCGAGG
ACGAGAGCTACGTGATGCCGACAATAAGCTACCCGGAGGACACCGTCTTC
GAGGACAACTATGGACAGGTAGGTACATTATGTGCGATTAATCCTTCTTG
GTGAAGGTCATGTTCGCTTCGTTTGTCGTCTCTTTTTGTCAGTCTTGCCT
CTCTCCAAGTGACTGTCGCTAGTCACGGGATATCTCGGCGAGACATTGAT
AGGCTGTCGCCACAGGCCGATTTTCAGGAGCACAGCGTCGAACCAAGCGT
TGTCATGACTTCCAGGAGCCGTTCAAGATTGTCGCGACCTTCAGATCTGA
CGACTAGATCACTCCCTTTCGTGTTTTCGTGTTCACTGATTTCTATCCGC
CCCTGGTGTTGTTGCTCTATCGACCCCCAAAAGTCGACGTTGCTGAAACT
TACGCTCTACAGCGCTGCACCGACTTTGCTGCGTCAGTGTCATGTCGTGT
GGCCGCCCACTCCCCAGTTGTTTTCACTTGCCATGATTTCTGACGTGTCA
CGCACTCGCTTCTCAACGCGATCCACTGCTCTCTGTTCCTTGTCCCCTTC
ACGCAGTACTGCAACGACTTCGCCTCTGACTTTGACGAGGAAACCTGTGG
CCTGTAGGCTGGCCTCTAGTTACATGCCCCTACGTGGGAACTACTGTACC
GTAGGCCCGTCAGCAGCACGTTCGGTTGAGGCGGTTGAGCGCTAGGGAGC
CTAAAGGAGGTTTTAGATTTTACTCCTTGGTCGGCATCTCGATGCTGTGC
ACGCGGAGGTATGTAAACGTCGGTCACGCTACAGTAGCGTTGGATACGGT
ACACTTTTGCTTGCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12082:3700..5015-

>mRNA_Ecto-sp13_S_contig12082.1770.1 ID=mRNA_Ecto-sp13_S_contig12082.1770.1|Name=mRNA_Ecto-sp13_S_contig12082.1770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12082:3700..5015- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTTTGGCGGGACCATCGCCAACATCGGCGGCGACATCACCGCCAATGC
CGGCAGCCTCTTCTTTGACGATTTCGCCGAAAACTCGGGGGATGGCGGCT
TGGGGGGTGCAATCTACAACTACGGAGGCGGCATCGTCAAGCTCACGGGC
TCGACCACCTTCAGGCAGAACTACGGTAACTGGGGGGGTGCCGTCTTCAA
CTCTGCGGTGCCTACCGCCTACTTCACGGCCGAGGACGAGAGCTACGTGA
TGCCGACAATAAGCTACCCGGAGGACACCGTCTTCGAGGACAACTATGGA
CAGTACTGCAACGACTTCGCCTCTGACTTTGACGAGGAAACCTGTGGCCT
GTAG
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