mRNA_Ecto-sp13_S_contig6740.17654.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6740.17654.1
Unique NamemRNA_Ecto-sp13_S_contig6740.17654.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: D7FWT4_ECTSI (Polynucleotide adenylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT4_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.050e-55
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 QVPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            QVPNYDSFLPVVRCVR+WAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV
Sbjct:  194 QVPNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 280
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: A0A6H5JKW8_9PHAE (Polynucleotide adenylyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW8_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 4.470e-54
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    4 VPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            VPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV
Sbjct:  220 VPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 305
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: A0A835ZG61_9STRA (Polynucleotide adenylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG61_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.050e-35
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    4 VPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            VPNY SFLPVVR VR WAK RG+Y NKMGYLGGVNFNI+VAFACQ+YP A PS LL  FFK+M  W WPN I L +P+DA LGL+V
Sbjct:  203 VPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQV 288
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: A0A7S4B388_CHRCT (Poly(A) polymerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B388_CHRCT)

HSP 1 Score: 129 bits (324), Expect = 5.560e-33
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 VPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLE 258
            VPN+DSFL V+RCVR WAK RG+YSNK GYLGGVN NI+VAF CQ YPNA  S LL RFF ++  W WP  I L  PYDA LGLE
Sbjct:  211 VPNFDSFLLVLRCVRLWAKRRGIYSNKFGYLGGVNCNILVAFVCQRYPNAASSLLLERFFYILKNWEWPTPIMLTPPYDAGLGLE 295
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: A0A2D4BYW1_PYTIN (Poly(A) polymerase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYW1_PYTIN)

HSP 1 Score: 124 bits (311), Expect = 3.430e-31
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEVTTQN 273
            PN DSF+ V+R VR+WAK RG+YSNKMGYLGGVN+ I+V F  Q+YP A PSTLL RFF +++ W WP AIQL + YDA+LGLEV   N
Sbjct:  170 PNRDSFISVLRIVRRWAKRRGIYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLSNWKWPLAIQLCKTYDAKLGLEVWNAN 258
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: K3WQA8_GLOUD (Polynucleotide adenylyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQA8_GLOUD)

HSP 1 Score: 124 bits (311), Expect = 4.070e-31
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEVTTQN 273
            PN DSF+ V+R VR+WAK RGLYSNKMGYLGGVN+ I+V F  Q+YP A PSTLL RFF ++A W WP AIQL + +DA+LGLEV   N
Sbjct:  209 PNRDSFISVLRIVRRWAKRRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLANWKWPLAIQLCKTHDAKLGLEVWNAN 297
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: A0A6G0WNJ7_9STRA (Poly(A) polymerase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNJ7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 8.800e-31
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEVTTQN 273
            PN +SF+ V+R VR+WAK RGLYSNK+GYLGGVN+ I+V F  Q+YP A PSTLL RFF +++ W WP+AIQL + YDA+LGLEV   N
Sbjct:  209 PNRESFIAVLRIVRRWAKRRGLYSNKLGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLSQWKWPSAIQLCKTYDAKLGLEVWNAN 297
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: A0A8K1CSA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSA9_PYTOL)

HSP 1 Score: 122 bits (307), Expect = 1.320e-30
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEVTTQN 273
            PN +SF+ V+R VR+WAK RGLYSNKMGYLGGVN+ I+V F  Q+YP A PSTLL RFF +++ W WP AIQL + YDA+LGLEV   N
Sbjct:  209 PNRESFIGVLRVVRRWAKRRGLYSNKMGYLGGVNWCILVCFVNQLYPTAAPSTLLLRFFMVLSTWKWPLAIQLCKTYDAKLGLEVWNAN 297
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BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: A0A5D6Y2P8_9STRA (Polynucleotide adenylyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2P8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.490e-30
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEVTTQN 273
            PN +SF+ V+R VR+WAK RGLYSNKMGYLGGVN+ I+V F  Q+YP A PSTLL RFF ++A W WP AIQL + +DA+LGLEV   N
Sbjct:  209 PNRESFISVLRVVRRWAKRRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLANWKWPLAIQLCKTHDAKLGLEVWNAN 297
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Match: B8C1U8_THAPS (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1U8_THAPS)

HSP 1 Score: 119 bits (298), Expect = 2.210e-30
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:   10 NYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
             Y +FL VVR VRKWAK+RGLYSNKMGY GGVN NI VA   Q+YPNA P++LL +FF +   W WPN + L +P+DAELGL V
Sbjct:  169 RYQTFLTVVRLVRKWAKARGLYSNKMGYWGGVNINIAVALVLQLYPNACPASLLRKFFLVFKSWRWPNPVMLTKPHDAELGLPV 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6740.17654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWT4_ECTSI2.050e-5598.85Polynucleotide adenylyltransferase n=1 Tax=Ectocar... [more]
A0A6H5JKW8_9PHAE4.470e-54100.00Polynucleotide adenylyltransferase n=1 Tax=Ectocar... [more]
A0A835ZG61_9STRA1.050e-3572.09Polynucleotide adenylyltransferase n=1 Tax=Tribone... [more]
A0A7S4B388_CHRCT5.560e-3368.24Poly(A) polymerase n=1 Tax=Chrysotila carterae Tax... [more]
A0A2D4BYW1_PYTIN3.430e-3164.04Poly(A) polymerase n=2 Tax=Pythium insidiosum TaxI... [more]
K3WQA8_GLOUD4.070e-3165.17Polynucleotide adenylyltransferase n=1 Tax=Globisp... [more]
A0A6G0WNJ7_9STRA8.800e-3162.92Poly(A) polymerase n=1 Tax=Aphanomyces euteiches T... [more]
A0A8K1CSA9_PYTOL1.320e-3064.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y2P8_9STRA1.490e-3064.04Polynucleotide adenylyltransferase n=1 Tax=Pythium... [more]
B8C1U8_THAPS2.210e-3063.10Polynucleotide adenylyltransferase (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6740contigEcto-sp13_S_contig6740:7035..7921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score189.5
Seed ortholog evalue7e-46
Seed eggNOG ortholog2880.D7FWT4
Model size276
KEGG koko:K09254,ko:K14376
KEGG Pathwayko03015,ko04014,ko04624,ko05202,ko05203,map03015,map04014,map04624,map05202,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008285,GO:0009653,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0022414,GO:0031123,GO:0031124,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045824,GO:0046483,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048441,GO:0048444,GO:0048446,GO:0048449,GO:0048451,GO:0048465,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0061458,GO:0065007,GO:0070013,GO:0070566,GO:0071704,GO:0080134,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1901360,GO:1905392,GO:1905393
Exons2
EggNOG free text desc.interspecies interaction between organisms
EggNOG OGsCOG5186@1,KOG2245@2759
EC2.7.7.19
Cds size276
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.0703573-CDS-Ecto-sp13_S_contig6740:7034..71721681463927.0703573-CDS-Ecto-sp13_S_contig6740:7034..7172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6740 7035..7172 -
1681463927.0846612-CDS-Ecto-sp13_S_contig6740:7783..79211681463927.0846612-CDS-Ecto-sp13_S_contig6740:7783..7921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6740 7784..7921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6740.17654.1prot_Ecto-sp13_S_contig6740.17654.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6740 7035..7921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6740.17654.1

>prot_Ecto-sp13_S_contig6740.17654.1 ID=prot_Ecto-sp13_S_contig6740.17654.1|Name=mRNA_Ecto-sp13_S_contig6740.17654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
QVPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPN
AGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEVTTQN*
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mRNA from alignment at Ecto-sp13_S_contig6740:7035..7921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6740.17654.1 ID=mRNA_Ecto-sp13_S_contig6740.17654.1|Name=mRNA_Ecto-sp13_S_contig6740.17654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=887bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6740:7035..7921- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCCGAACTACGATTCGTTCCTCCCGGTGGTGAGGTGCGTCCGAAA
GTGGGCCAAATCCAGGGGTTTGTACAGCAACAAGATGGGATACTTGGGAG
GAGTGAACTTCAACATCATGGTGGCCTTCGCTTGTCAGGTGGGCGGCGAA
TCAACGCTGCGGCGGTTGGTTGCGTGTATTGTGCACGGGCGATACCATAC
AGCAGTGCCGGTAGGCATATGCCCCGAGATCTGACCGCTACACCAGCACC
ATGCACCCGGTACCAAGCAGTAACGCTACCCGCACTGCTGTATTTTGCGA
ACAAGCTCCGTCTTGTTTGCTGTGGTAGGCCTTGCTTCCCTTTCACCGCC
GCCTTCGCATGTCTTCGTTCGGTTGTTGGCTTGGCGAAGAAAGGAGGGCG
TGGTGGGCGCGCTTGTAGATGCGGTTGTGTTTGGCATGTCGTGGCTCCGT
ATCACATCCTCCGACCATCGCAACCATCTCCGATCGTGTCCATCTCCGAT
CAAACCTCGGATCACATCTCCTGCAGTACGTATGACATCTCCGATCACAT
CTCGGATCGCACCTCCGATCACAGCTCAGTTCACAGCTCCGGCTTCGAGA
CGAAACAGTACCATTAGGTGCCCACCAAGCGACATAGCAACGAACCTGCC
AACAAGCCATTGCCGTAGCACCCCGTAGGCCGAGCACCGAATAAACAACT
CCCCGCGTGCCTCCAAAACCACCGTTGCCGCTGTCGTTGTCGTGGGCAGA
TGTACCCGAACGCCGGCCCGTCGACCCTTCTGCATCGGTTCTTCAAGCTA
ATGGCCGGTTGGAACTGGCCCAACGCTATCCAGCTCGTGCAGCCCTACGA
CGCTGAGCTTGGACTAGAGGTGACGACGCAGAATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6740:7035..7921-

>mRNA_Ecto-sp13_S_contig6740.17654.1 ID=mRNA_Ecto-sp13_S_contig6740.17654.1|Name=mRNA_Ecto-sp13_S_contig6740.17654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6740:7035..7921- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCCGAACTACGATTCGTTCCTCCCGGTGGTGAGGTGCGTCCGAAA
GTGGGCCAAATCCAGGGGTTTGTACAGCAACAAGATGGGATACTTGGGAG
GAGTGAACTTCAACATCATGGTGGCCTTCGCTTGTCAGATGTACCCGAAC
GCCGGCCCGTCGACCCTTCTGCATCGGTTCTTCAAGCTAATGGCCGGTTG
GAACTGGCCCAACGCTATCCAGCTCGTGCAGCCCTACGACGCTGAGCTTG
GACTAGAGGTGACGACGCAGAATTGA
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