mRNA_Ecto-sp13_S_contig67334.17643.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67334.17643.1
Unique NamemRNA_Ecto-sp13_S_contig67334.17643.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67334.17643.1 vs. uniprot
Match: A0A6H5JI18_9PHAE (PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI18_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.130e-12
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 QDGTDLTFSPPLPQAKLAAIRRLGFGTADKFFVR 102
            QDG  LTFSPPLPQAKLAAIRRLGFGTADKFFVR
Sbjct:  499 QDGMALTFSPPLPQAKLAAIRRLGFGTADKFFVR 532
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BLAST of mRNA_Ecto-sp13_S_contig67334.17643.1 vs. uniprot
Match: D7G835_ECTSI (Similar to peroxisomal n1-acetyl-spermine/spermidine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G835_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.930e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 QDGTDLTFSPPLPQAKLAAIRRLGFGTADKFFVR 102
            +DGT LTFSPPLPQAKLAAIRR+GFGTADKFFVR
Sbjct:  456 KDGTALTFSPPLPQAKLAAIRRVGFGTADKFFVR 489
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67334.17643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI18_9PHAE2.130e-1294.12PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G835_ECTSI2.930e-1291.18Similar to peroxisomal n1-acetyl-spermine/spermidi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67334contigEcto-sp13_S_contig67334:14..118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score67.4
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D7G835
Model size105
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.positive regulation of spermidine biosynthetic process
EggNOG OGsKOG0685@1,KOG0685@2759
Cds size105
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.298287-CDS-Ecto-sp13_S_contig67334:13..1181681463926.298287-CDS-Ecto-sp13_S_contig67334:13..118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67334 14..118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67334.17643.1prot_Ecto-sp13_S_contig67334.17643.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67334 14..118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67334.17643.1

>prot_Ecto-sp13_S_contig67334.17643.1 ID=prot_Ecto-sp13_S_contig67334.17643.1|Name=mRNA_Ecto-sp13_S_contig67334.17643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
QDGTDLTFSPPLPQAKLAAIRRLGFGTADKFFVR*
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mRNA from alignment at Ecto-sp13_S_contig67334:14..118-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67334.17643.1 ID=mRNA_Ecto-sp13_S_contig67334.17643.1|Name=mRNA_Ecto-sp13_S_contig67334.17643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67334:14..118- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACGGCACGGACCTGACGTTTTCCCCACCTCTACCCCAGGCAAAGCT
GGCTGCGATCCGCCGCCTAGGATTCGGGACAGCCGACAAGTTTTTCGTGA
GGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67334:14..118-

>mRNA_Ecto-sp13_S_contig67334.17643.1 ID=mRNA_Ecto-sp13_S_contig67334.17643.1|Name=mRNA_Ecto-sp13_S_contig67334.17643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67334:14..118- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACGGCACGGACCTGACGTTTTCCCCACCTCTACCCCAGGCAAAGCT
GGCTGCGATCCGCCGCCTAGGATTCGGGACAGCCGACAAGTTTTTCGTGA
GGTAA
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