mRNA_Ecto-sp13_S_contig6731.17640.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6731.17640.1
Unique NamemRNA_Ecto-sp13_S_contig6731.17640.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6731.17640.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.190e-7
Identity = 19/28 (67.86%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   19 SLDAFCSVCHELLDSPVRTECGHAFCQV 102
            +LDAFCS+C+E+L++PVRT CGH FCQ 
Sbjct:  983 TLDAFCSMCNEILEAPVRTRCGHTFCQA 1010
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BLAST of mRNA_Ecto-sp13_S_contig6731.17640.1 vs. uniprot
Match: D7G0T2_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T2_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.100e-6
Identity = 17/28 (60.71%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   19 SLDAFCSVCHELLDSPVRTECGHAFCQV 102
            S+DAFC +C+++++SPVRT+CGH FCQ+
Sbjct:  955 SVDAFCPICNDIIESPVRTKCGHTFCQL 982
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BLAST of mRNA_Ecto-sp13_S_contig6731.17640.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 3.920e-6
Identity = 17/28 (60.71%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   19 SLDAFCSVCHELLDSPVRTECGHAFCQV 102
            S+DAFC +C+++++SPVRT+CGH FCQ 
Sbjct: 1016 SVDAFCPICNDIIESPVRTKCGHIFCQA 1043
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6731.17640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0S9_ECTSI8.190e-767.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T2_ECTSI2.100e-660.71Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5KW09_9PHAE3.920e-660.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6731contigEcto-sp13_S_contig6731:7879..7986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size108
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.2024546-CDS-Ecto-sp13_S_contig6731:7878..79861681463926.2024546-CDS-Ecto-sp13_S_contig6731:7878..7986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6731 7879..7986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6731.17640.1prot_Ecto-sp13_S_contig6731.17640.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6731 7879..7986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6731.17640.1

>prot_Ecto-sp13_S_contig6731.17640.1 ID=prot_Ecto-sp13_S_contig6731.17640.1|Name=mRNA_Ecto-sp13_S_contig6731.17640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
GEVLADSLDAFCSVCHELLDSPVRTECGHAFCQVR*
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mRNA from alignment at Ecto-sp13_S_contig6731:7879..7986-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6731.17640.1 ID=mRNA_Ecto-sp13_S_contig6731.17640.1|Name=mRNA_Ecto-sp13_S_contig6731.17640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6731:7879..7986- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGAAGTGCTCGCCGACTCCTTGGACGCATTCTGCTCGGTATGCCACGA
GCTCTTGGACTCCCCTGTGAGGACGGAGTGCGGTCACGCCTTCTGCCAGG
TTCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6731:7879..7986-

>mRNA_Ecto-sp13_S_contig6731.17640.1 ID=mRNA_Ecto-sp13_S_contig6731.17640.1|Name=mRNA_Ecto-sp13_S_contig6731.17640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6731:7879..7986- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGAAGTGCTCGCCGACTCCTTGGACGCATTCTGCTCGGTATGCCACGA
GCTCTTGGACTCCCCTGTGAGGACGGAGTGCGGTCACGCCTTCTGCCAGG
TTCGGTGA
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