mRNA_Ecto-sp13_S_contig673.17633.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig673.17633.1
Unique NamemRNA_Ecto-sp13_S_contig673.17633.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: D7G768_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G768_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 1.090e-108
Identity = 174/184 (94.57%), Postives = 175/184 (95.11%), Query Frame = 1
Query:    1 MPGSDKHAAIIAIEKHGCSVASGALACFASVLGKVAFDGDTPFQVQATSACEEHFSELALCNTVGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTVATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPEDDKTSERIKGEEGLRSTSQSAHSSSRKTTKDREKRD 552
            MPG+DKHAAIIAIE HG SVASGALACFASVLGKVAFDGDTPFQVQATSACEEHF ELALCNTVGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTVATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPE  KTSERIKGE GL ST QS HSSSRKTTKDREKRD
Sbjct:    1 MPGADKHAAIIAIENHGYSVASGALACFASVLGKVAFDGDTPFQVQATSACEEHFPELALCNTVGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTVATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPEGGKTSERIKGE-GLTSTGQSTHSSSRKTTKDREKRD 183          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: UPI001B88B7FF (transmembrane protein 42-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B7FF)

HSP 1 Score: 73.6 bits (179), Expect = 3.300e-13
Identity = 47/147 (31.97%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   64 SGALACFASVLGKVAFDGDTPFQVQATSACEEHFSELAL----------CNTVGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTV-ATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLL-TGGSSPEDDKTSERI 468
            +G +A  AS+  K+A   +    +     C+     L L           +TV   V+   +  MF+ N +ML+ F K+LQ+  S+V ATVTN + NF+++ ++   +FG+RLP LW+ GASL+++G+V +  GG+  + ++T E++
Sbjct:   15 AGCMAALASISAKIATSYEDTSSI--CYRCQRFLQSLLLWSIFEEGSPFMSTVITAVRVCGVCSMFLCNGLMLTLFSKSLQLCPSSVEATVTNTAANFIVTAVASLALFGDRLPLLWWLGASLILTGLVFIHRGGNRAQAEQTREKV 159          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: A0A433QZ90_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QZ90_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 8.620e-12
Identity = 52/139 (37.41%), Postives = 75/139 (53.96%), Query Frame = 1
Query:   64 SGALACFASVLGKVAFDGDTPFQVQATSACEEHFSELALC-----NTVGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTV-ATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSS--PEDDKT 456
            SG  A  ASV  K+  D  T   +Q   +  + ++ L LC     N +  +V+G   A +F  NA+M + F KAL  + S+V  TV N + NF  + I G +VFGE L   W+ GASL+V+G +L+T   S   E +KT
Sbjct:   14 SGLFASLASVFAKLFTDTRTDAAIQWICSASQLYAGLDLCANQGDNVLLLVVRGTCFALIFGCNALMWTLFTKALNKATSSVQVTVVNSAINFCATAILGNVVFGEPLALQWWGGASLIVTGTLLMTRAQSNASEQEKT 152          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: A0A1Y1VPS6_9FUNG (EamA domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1VPS6_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 1.610e-11
Identity = 51/141 (36.17%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   55 SVASGALACFASVLGKVAFDGDTPFQVQATSACEEHFSELALCNT-----------------VGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTV-ATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLL 423
            S  +G LA  ASV  K+A D  T   V     C    S+ + C T                 + R+++ +S   +F+ NA+M + F KAL +S S++  TV N +TNF L+ I G ++F E L   W+FGASL+V G VLL
Sbjct:   13 SALAGTLAALASVCAKLAVDSST--NVFYRFVCSLFVSDESWCTTDNEVYIKGDDSWIRFQTIFRVLRVSSFLCLFLCNALMWAFFTKALNVSSSSIQVTVINTATNFCLTAILGYLIFNEPLSLQWWFGASLIVVGTVLL 151          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: A0A1S4BD16_TOBAC (uncharacterized protein LOC107807016 isoform X1 n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BD16_TOBAC)

HSP 1 Score: 65.1 bits (157), Expect = 1.860e-10
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  238 NAVMLSTFLKALQMSGSTVATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPEDDKTS 459
            N  M   ++ +L+   S  ATVTNF+TNF+ SG++G ++F ERLP  WF GA+L+V GV++L+  S  +   TS
Sbjct:   39 NVTMWGCYINSLKALSSLQATVTNFATNFLSSGLAGFLLFQERLPIQWFAGAALIVLGVIVLSKSSIEKKSHTS 112          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: A0A1Y1V8Y6_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V8Y6_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 2.160e-10
Identity = 55/157 (35.03%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   55 SVASGALACFASVLGKVAFDGDTPFQVQATSACEEHFSELALCNT-----------------VGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTV-ATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPEDDKTSERIK 471
            SV +G LA  ASV  K+A D +T    +    C    S    C+                  + R+ +  S   +F+ NA+M + F KAL +S S++  TV N +TNF L+ I G ++F E L   W+FGASL+V+G VLL    + E  KT E+ K
Sbjct:   13 SVLAGTLAALASVCAKLAVDSNTNQYYRFV--CRFFVSNPDWCSVEDGVYIRGDDSWIKFQKIFRIFRLISFLCLFLCNALMWAYFTKALNVSKSSIQVTVINNATNFCLTAILGLLIFNEPLSLQWWFGASLIVTGTVLL----NTEIQKTEEKKK 163          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: A0A830CDS6_9LAMI (Uncharacterized protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CDS6_9LAMI)

HSP 1 Score: 63.2 bits (152), Expect = 3.650e-10
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  259 FLKALQMSGSTVATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPEDDKTS 459
            ++ +++   S  ATVTNF+TNFV SG++G  +F E LPA WF GA+++V GV++L+  S  E   TS
Sbjct:    5 YVNSMRSLSSLQATVTNFATNFVSSGLAGFFLFDEALPAKWFAGAAMIVIGVIVLSKSSIEEKTHTS 71          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: A0A7C8ZMD7_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZMD7_OPUST)

HSP 1 Score: 64.3 bits (155), Expect = 4.200e-10
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  232 MVNAVMLSTFLKALQMSGSTVATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPEDDKT 456
            M N  M   ++ +L+   S  ATVTNF+TNF+ SG++G ++FGE L   WF GA L+V GV +LT  S  E + T
Sbjct:   43 MFNVTMWGCYVNSLRALSSLQATVTNFATNFLSSGLAGFLLFGEELSTKWFAGALLIVIGVFVLTKSSIKEKEHT 117          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: U9UBE8_RHIID (EamA domain-containing protein n=5 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9UBE8_RHIID)

HSP 1 Score: 65.1 bits (157), Expect = 4.920e-10
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   55 SVASGALACFASVLGKVAFDGDTPFQVQATS---------ACEEHFSELAL-CNTVGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTV-ATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGS 435
            S+ SG  A  ASV  K+  D  T   +Q             CEE  +E+    N +  L++      +F+ NA+M + F KAL  S S++  TV N +TNF ++ I G ++FGE L   W+FGASL+V G +L+   S
Sbjct:   14 SILSGTFAALASVFAKLFTDVRTFLILQYLCDVIGNDTFFKCEEILNEIKEDTNWIMYLIRIFCFGSIFICNALMWTFFTKALNKSSSSLQVTVLNSATNFCMTAILGNIIFGETLSLQWWFGASLIVIGTLLVNKSS 151          
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Match: V4ADD2_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ADD2_LOTGI)

HSP 1 Score: 64.7 bits (156), Expect = 5.260e-10
Identity = 43/131 (32.82%), Postives = 74/131 (56.49%), Query Frame = 1
Query:   55 SVASGALACFASVLGKVAFDGDTPFQVQATSACEEHFSELALCNT--------VGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTVATVTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLL 423
            S+ +G+ A  ASV  K+            TS+   + SE+ L ++        +  +++G  L  +F+ NA+M + F K+LQ   S  AT+TN STNF++S I G+++F E LP LW+ G+  ++ G++L+
Sbjct:    9 SIFAGSFAALASVSAKL-----------VTSSEITYISEIILGSSGNAGILQHLPLVIRGVCLIAVFLSNALMWTFFTKSLQYLSSIQATITNTSTNFLVSAIIGKILFKELLPILWWIGSVFILLGLLLI 128          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig673.17633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G768_ECTSI1.090e-10894.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001B88B7FF3.300e-1331.97transmembrane protein 42-like n=1 Tax=Gigantopelta... [more]
A0A433QZ90_9FUNG8.620e-1237.41Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A1Y1VPS6_9FUNG1.610e-1136.17EamA domain-containing protein n=1 Tax=Anaeromyces... [more]
A0A1S4BD16_TOBAC1.860e-1044.59uncharacterized protein LOC107807016 isoform X1 n=... [more]
A0A1Y1V8Y6_9FUNG2.160e-1035.03Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A830CDS6_9LAMI3.650e-1046.27Uncharacterized protein n=1 Tax=Phtheirospermum ja... [more]
A0A7C8ZMD7_OPUST4.200e-1045.33Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
U9UBE8_RHIID4.920e-1035.51EamA domain-containing protein n=5 Tax=Rhizophagus... [more]
V4ADD2_LOTGI5.260e-1032.82Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig673contigEcto-sp13_S_contig673:3622..5538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score88.2
Seed ortholog evalue4.4e-15
Seed eggNOG ortholog42099.EPrPV00000019244
Model size555
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.protein. Source PGD
EggNOG OGs1MIAC@121069,2CWME@1,2RUUJ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010850.1
Cds size555
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463925.6301153-CDS-Ecto-sp13_S_contig673:3621..38431681463925.6301153-CDS-Ecto-sp13_S_contig673:3621..3843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig673 3622..3843 -
1681463925.6422644-CDS-Ecto-sp13_S_contig673:4302..44461681463925.6422644-CDS-Ecto-sp13_S_contig673:4302..4446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig673 4303..4446 -
1681463925.6521125-CDS-Ecto-sp13_S_contig673:4857..49901681463925.6521125-CDS-Ecto-sp13_S_contig673:4857..4990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig673 4858..4990 -
1681463925.6627696-CDS-Ecto-sp13_S_contig673:5482..55381681463925.6627696-CDS-Ecto-sp13_S_contig673:5482..5538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig673 5483..5538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig673.17633.1prot_Ecto-sp13_S_contig673.17633.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig673 3622..5538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig673.17633.1

>prot_Ecto-sp13_S_contig673.17633.1 ID=prot_Ecto-sp13_S_contig673.17633.1|Name=mRNA_Ecto-sp13_S_contig673.17633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MPGSDKHAAIIAIEKHGCSVASGALACFASVLGKVAFDGDTPFQVQATSA
CEEHFSELALCNTVGRLVQGASLAGMFMVNAVMLSTFLKALQMSGSTVAT
VTNFSTNFVLSGISGRMVFGERLPALWFFGASLVVSGVVLLTGGSSPEDD
KTSERIKGEEGLRSTSQSAHSSSRKTTKDREKRD*
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mRNA from alignment at Ecto-sp13_S_contig673:3622..5538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig673.17633.1 ID=mRNA_Ecto-sp13_S_contig673.17633.1|Name=mRNA_Ecto-sp13_S_contig673.17633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1917bp|location=Sequence derived from alignment at Ecto-sp13_S_contig673:3622..5538- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGGTTCGGACAAGCACGCCGCCATAATCGCCATCGAGAAGCACGG GTGCAGGTGACACATTTGTAGTCCATGCGGCGCAATAACGTTATATACTC CATAGTGCTTGAATTTGTACCAGTATGTTCTTTGTGTTGCGGCAACGTGA TTCTGTACTGACCACTACACTGGTGTAGACGTGTTGCTCGGCCCCTGTGT TGCTCTGCATTCACCATTCTGTAGCGACAATGACGTATACACTTTTCGTA CCGACTATGAGTTACCCTGAAACAGTGAAAGTACACGACGGCTCTCTGTG ACTCCTACCCGGTACCCGCCGTTTCTGTTTTTGGACGTGCGAAGACTTTA GCGTAGCTCACGTCGAACACCATTCTAAACGTTTCATGAGGCAAGCAAAA CGCCAAACCTACCAGCGTTCCGGCGACACACGTTTCCCCTCCCAGTTCTA CCCAACGGCCGCCTCGAACTGCCAAGGGCAGAAAGCACCGCCTTTTCGCT CTTGTTTTTTTTTTTTTTTGCCGCCATGCAACCGTCTTTTTCTTGCAGCG TGGCATCCGGCGCTCTGGCATGTTTCGCATCCGTGCTGGGCAAGGTGGCT TTCGACGGCGACACGCCTTTCCAGGTCCAAGCAACGAGCGCTTGCGAGGA GCACTTCTCGGAGTTGGCGTTGTGCAACACGGTGAGGTCACCAAAAATAA AGTCTTCGACAACGAGTCACACACGTGCGGTGGAGCGTGTCTTGCCGGTG TAGTCTCTGTGCGTGCGTTGGTTCGCCAGTTGCCGCATGTTGCGAACGTT AGAAAGCTGCCTTGGTGGTTCGTAGATTCATCAGGTCGCAAGCGAACACG ATACAGGACATCAATTCCTTGGTTTTGGCTTTTGGAGGTTGAGAGGCTCC GCGACGGCAACGAACGGTTCATTCTACCTCATCATATGACAGCTGTGTCG TCTTGCATTTGTCTGTGTCTGATACATCAAGGGCGTTTCACGCCTACCCT CATCGCTTAGACTCATGGTGGACTGCTGCTATGTATCTGCACTCCTTGTC GCGCTGCGCTTGATGTGGACCCCTTTGGCTGGTTTATCTCAGGTAGGCCG TCTGGTTCAGGGCGCGTCGCTGGCGGGAATGTTCATGGTGAACGCCGTGA TGCTTTCGACCTTCCTTAAAGCTCTCCAGATGTCGGGGTCTACCGTCGCC ACCGTCACCAATTTTTCCACCAACTTTGTGCTGTCGGTAAGAGTATGATG CCTATTTGTTAGACGCGTTGATGCCCAGTACACTCACCCCGTGATTCCGC CACCCGTTGCTGTGTACCCTTCGAGGTTTGCGACCTGAAGTCGTGATGTC CTTGCACTTACACCCCTTGTGCGAGACAACAACTCCCCGTACCCTTGTGC AACCGCGAAGAGTGCGACCTTATCCCTGTGGTGCACCGTAGCTACACCAT TCGCACCGAGTTGCTTCGTTTGCCACAAGAAACCAAAAAATGTGCTACAT GCAGTACCGTTACGGAAACCCGACCGAGTGGACCTCCACGAACATTAGTG CGGCAAGTTTTTATGGTCGTTGAAAAATCTCCACCCGCGCTCGTAATACA ACATGAGCTCTTTTCTTCATGTCGGCGTCGCTTGAAATCTGTTGTGATTC GCGCGTTCCGCCTCTTACACTTCCACCATGCTGTCCACGTGGCAGGGCAT CTCCGGTAGGATGGTCTTTGGGGAGAGGTTGCCGGCATTGTGGTTCTTCG GTGCTTCGCTAGTCGTCTCGGGCGTGGTGCTTTTAACCGGCGGCAGTAGC CCCGAGGACGACAAGACTTCCGAGAGAATAAAAGGAGAAGAAGGCTTAAG ATCGACCAGCCAAAGCGCCCATTCAAGTTCGCGAAAAACAACAAAAGACC GGGAGAAACGAGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig673:3622..5538-

>mRNA_Ecto-sp13_S_contig673.17633.1 ID=mRNA_Ecto-sp13_S_contig673.17633.1|Name=mRNA_Ecto-sp13_S_contig673.17633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig673:3622..5538- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGGTTCGGACAAGCACGCCGCCATAATCGCCATCGAGAAGCACGG
GTGCAGCGTGGCATCCGGCGCTCTGGCATGTTTCGCATCCGTGCTGGGCA
AGGTGGCTTTCGACGGCGACACGCCTTTCCAGGTCCAAGCAACGAGCGCT
TGCGAGGAGCACTTCTCGGAGTTGGCGTTGTGCAACACGGTAGGCCGTCT
GGTTCAGGGCGCGTCGCTGGCGGGAATGTTCATGGTGAACGCCGTGATGC
TTTCGACCTTCCTTAAAGCTCTCCAGATGTCGGGGTCTACCGTCGCCACC
GTCACCAATTTTTCCACCAACTTTGTGCTGTCGGGCATCTCCGGTAGGAT
GGTCTTTGGGGAGAGGTTGCCGGCATTGTGGTTCTTCGGTGCTTCGCTAG
TCGTCTCGGGCGTGGTGCTTTTAACCGGCGGCAGTAGCCCCGAGGACGAC
AAGACTTCCGAGAGAATAAAAGGAGAAGAAGGCTTAAGATCGACCAGCCA
AAGCGCCCATTCAAGTTCGCGAAAAACAACAAAAGACCGGGAGAAACGAG
ATTGA
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