mRNA_Ecto-sp13_S_contig12067.1761.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12067.1761.1
Unique NamemRNA_Ecto-sp13_S_contig12067.1761.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: D8LKN5_ECTSI (ADP/ATP translocase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 5.100e-97
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1 
Query:    1 MAEKAQSNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            MAEKAQSNFLVDFALGGVSGAVAKTCTAPIER KLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR
Sbjct:    1 MAEKAQSNFLVDFALGGVSGAVAKTCTAPIERVKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 140
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: A0A6H5JHM3_9PHAE (ADP/ATP translocase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM3_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 4.010e-94
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:    1 MAEKAQSNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            MAEKAQSNFLVDFALGGVSGAVAKTCTAPIER KLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFF INMASGGLAGAGSLCFVYPLDYAR
Sbjct:    1 MAEKAQSNFLVDFALGGVSGAVAKTCTAPIERVKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFVINMASGGLAGAGSLCFVYPLDYAR 140
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: A0A836CBW4_9STRA (ADP/ATP translocase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW4_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.600e-79
Identity = 116/137 (84.67%), Postives = 123/137 (89.78%), Query Frame = 1 
Query:   10 KAQSNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            K QSNFL DFALGGVSGAVAKTCTAPIER KL+IQTQDANP+I+SGEI RY GIG+CF+RVY EQG  AFWRGN TN+IRYFPTQAFNFAFKDTIK +FPK NPKTEFGKFF INMASGGLAGAGSL  VYPLDYAR
Sbjct:    6 KKQSNFLADFALGGVSGAVAKTCTAPIERVKLLIQTQDANPRIRSGEIPRYTGIGNCFTRVYQEQGFSAFWRGNFTNVIRYFPTQAFNFAFKDTIKAMFPKTNPKTEFGKFFLINMASGGLAGAGSLAIVYPLDYAR 142
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: A0A7S4SW75_9STRA (ADP/ATP translocase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SW75_9STRA)

HSP 1 Score: 238 bits (607), Expect = 2.580e-78
Identity = 111/135 (82.22%), Postives = 122/135 (90.37%), Query Frame = 1 
Query:   16 QSNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            +SNFLVDFA GG+SGA+AKTCTAPIER KLIIQTQDANP+I SGE+ RY GIG+CF+RVY EQGL+AFW GN  NIIRYFPTQAFNFAFKDTIKGLFPK N K +FGKFFA+N+ASGGLAGAGSLC VYPLDYAR
Sbjct:    9 ESNFLVDFAAGGISGAIAKTCTAPIERVKLIIQTQDANPRIMSGEVPRYTGIGNCFARVYQEQGLRAFWAGNGVNIIRYFPTQAFNFAFKDTIKGLFPKYNAKDDFGKFFAVNVASGGLAGAGSLCIVYPLDYAR 143
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: D7FR66_ECTSI (ADP/ATP translocase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR66_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.400e-77
Identity = 113/140 (80.71%), Postives = 127/140 (90.71%), Query Frame = 1 
Query:    1 MAEKAQSNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            M+ K +SNFLVDFALGGVSGA+AKTCTAPIER KLI+QTQDANP+IKSGE+ARY GI +CF+RV+ EQGL AFWRGN TN+IRYFPTQAFNFAFKD IK LFPK +PK +F KFFAIN+ASGGLAGAGSLCFVYPLD+AR
Sbjct:    1 MSSKKESNFLVDFALGGVSGAIAKTCTAPIERVKLIMQTQDANPRIKSGEVARYTGIVNCFTRVHQEQGLAAFWRGNTTNVIRYFPTQAFNFAFKDQIKALFPKVSPKDDFAKFFAINIASGGLAGAGSLCFVYPLDFAR 140
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: A0A7S2X5R8_PROMC (ADP/ATP translocase n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A7S2X5R8_PROMC)

HSP 1 Score: 238 bits (607), Expect = 1.430e-76
Identity = 111/135 (82.22%), Postives = 122/135 (90.37%), Query Frame = 1 
Query:   16 QSNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            +SNFLVDFA GG+SGA+AKTCTAPIER KLIIQTQDANP+I SGE+ RY GIG+CF+RVY EQGL+AFW GN  NIIRYFPTQAFNFAFKDTIKGLFPK N K +FGKFFA+N+ASGGLAGAGSLC VYPLDYAR
Sbjct:    4 ESNFLVDFAAGGISGAIAKTCTAPIERVKLIIQTQDANPRIMSGEVPRYTGIGNCFARVYQEQGLRAFWAGNGVNIIRYFPTQAFNFAFKDTIKGLFPKYNAKDDFGKFFAVNVASGGLAGAGSLCIVYPLDYAR 138
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: F2E4J1_HORVV (ADP/ATP translocase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E4J1_HORVV)

HSP 1 Score: 234 bits (598), Expect = 5.070e-75
Identity = 111/134 (82.84%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:   19 SNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            S+FLVDFA GG+SGAVAKT TAPIER KLIIQTQDANP IKSG++ARY GIG+CF+RVY EQGL AFWRGN TN+IRYFPTQAFNFAFKDTIKG+FPK +PK EFG FF  NMASGGLAGAGSLC VYPLDYAR
Sbjct:   10 SSFLVDFAAGGISGAVAKTATAPIERVKLIIQTQDANPLIKSGKVARYTGIGNCFTRVYQEQGLAAFWRGNFTNVIRYFPTQAFNFAFKDTIKGMFPKYSPKKEFGMFFLTNMASGGLAGAGSLCIVYPLDYAR 143
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: A0A061QXY6_9CHLO (ADP/ATP translocase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QXY6_9CHLO)

HSP 1 Score: 233 bits (593), Expect = 3.690e-74
Identity = 112/132 (84.85%), Postives = 118/132 (89.39%), Query Frame = 1 
Query:   25 FLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            FL DF LGGVSGA+AKTCTAPIER KLIIQTQDANP+I SGE+ RY GIG+CF RVYSEQGL AFWRGN TN IRYFPTQAFNFAFKD+IK LFPKA+PK EF KFFAINMASGGLAGAGSLC VYPLDYAR
Sbjct:   14 FLKDFTLGGVSGAIAKTCTAPIERVKLIIQTQDANPRIISGEVPRYTGIGNCFVRVYSEQGLSAFWRGNFTNCIRYFPTQAFNFAFKDSIKKLFPKADPKEEFVKFFAINMASGGLAGAGSLCLVYPLDYAR 145
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: A8E615_XENLA (ADP/ATP translocase n=1 Tax=Xenopus laevis TaxID=8355 RepID=A8E615_XENLA)

HSP 1 Score: 230 bits (586), Expect = 2.540e-73
Identity = 108/132 (81.82%), Postives = 116/132 (87.88%), Query Frame = 1 
Query:   25 FLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            F+ DF LGGVSGA+AKT TAPIER KLIIQTQD+NP+I SGE+ RY GIG+CF+RVY EQG  AFWRGN TNIIRYFPTQAFNFAFKDTIK LFPK NPK EFGKFF +NMASGGLAGAGSLC VYPLDYAR
Sbjct:   10 FVTDFLLGGVSGAIAKTATAPIERVKLIIQTQDSNPRIISGEVPRYTGIGNCFTRVYQEQGFAAFWRGNFTNIIRYFPTQAFNFAFKDTIKKLFPKVNPKEEFGKFFLVNMASGGLAGAGSLCIVYPLDYAR 141
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BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Match: A0A1Z5JED0_FISSO (ADP/ATP translocase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JED0_FISSO)

HSP 1 Score: 229 bits (585), Expect = 3.280e-73
Identity = 111/134 (82.84%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:   19 SNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 420
            S F+++F  GGVSGAVAKT TAPIER KL+IQTQDANPKI SGE+ARYNGI DCFSRV SEQG+KAFWRGN+TNIIRYFPTQAFNFAFKDTIK +FPKA+   EFGKFFAINMASGGLAGAGSL  VYPLDYAR
Sbjct:    5 SEFIINFLAGGVSGAVAKTATAPIERVKLLIQTQDANPKIISGEVARYNGIVDCFSRVASEQGVKAFWRGNLTNIIRYFPTQAFNFAFKDTIKAIFPKADKNKEFGKFFAINMASGGLAGAGSLLIVYPLDYAR 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12067.1761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKN5_ECTSI5.100e-9799.29ADP/ATP translocase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JHM3_9PHAE4.010e-9498.57ADP/ATP translocase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A836CBW4_9STRA1.600e-7984.67ADP/ATP translocase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S4SW75_9STRA2.580e-7882.22ADP/ATP translocase (Fragment) n=1 Tax=Ditylum bri... [more]
D7FR66_ECTSI1.400e-7780.71ADP/ATP translocase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2X5R8_PROMC1.430e-7682.22ADP/ATP translocase n=2 Tax=Dinophyceae TaxID=2864... [more]
F2E4J1_HORVV5.070e-7582.84ADP/ATP translocase n=1 Tax=Hordeum vulgare subsp.... [more]
A0A061QXY6_9CHLO3.690e-7484.85ADP/ATP translocase n=1 Tax=Tetraselmis sp. GSL018... [more]
A8E615_XENLA2.540e-7381.82ADP/ATP translocase n=1 Tax=Xenopus laevis TaxID=8... [more]
A0A1Z5JED0_FISSO3.280e-7382.84ADP/ATP translocase n=2 Tax=Fistulifera solaris Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12067contigEcto-sp13_S_contig12067:1153..1575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score240.7
Seed ortholog evalue4e-61
Seed eggNOG ortholog2880.D7FR66
Model size423
KEGG koko:K05863
KEGG TC2.A.29.1
KEGG Pathwayko04020,ko04022,ko04217,ko04218,ko05012,ko05016,ko05166,map04020,map04022,map04217,map04218,map05012,map05016,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005347,GO:0005471,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006855,GO:0006862,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0015075,GO:0015215,GO:0015216,GO:0015217,GO:0015238,GO:0015291,GO:0015297,GO:0015301,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015866,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046902,GO:0050896,GO:0051179,GO:0051234,GO:0051503,GO:0055085,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071840,GO:0090559,GO:0098573,GO:0098656,GO:0099516,GO:1901264,GO:1901505,GO:1901679
Exons1
EggNOG free text desc.ATP:ADP antiporter activity
EggNOG OGsKOG0749@1,KOG0749@2759
Ec32 ortholog descriptionmitochondrial ADP/ATP translocator
Ec32 orthologEc-03_000980.1
Cds size423
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.0877702-CDS-Ecto-sp13_S_contig12067:1152..15751681462641.0877702-CDS-Ecto-sp13_S_contig12067:1152..1575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12067 1153..1575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12067.1761.1prot_Ecto-sp13_S_contig12067.1761.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12067 1153..1575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12067.1761.1

>prot_Ecto-sp13_S_contig12067.1761.1 ID=prot_Ecto-sp13_S_contig12067.1761.1|Name=mRNA_Ecto-sp13_S_contig12067.1761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MAEKAQSNFLVDFALGGVSGAVAKTCTAPIERAKLIIQTQDANPKIKSGE
IARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKG
LFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR*
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mRNA from alignment at Ecto-sp13_S_contig12067:1153..1575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12067.1761.1 ID=mRNA_Ecto-sp13_S_contig12067.1761.1|Name=mRNA_Ecto-sp13_S_contig12067.1761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12067:1153..1575+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGAAAGCACAGTCAAACTTCCTAGTTGACTTCGCCCTCGGCGG
AGTCAGCGGAGCGGTCGCGAAGACTTGCACCGCGCCTATCGAGCGCGCGA
AGCTCATCATCCAGACGCAGGATGCCAACCCCAAGATCAAGTCGGGCGAG
ATCGCACGCTACAATGGGATCGGCGACTGCTTCTCCAGGGTGTACTCCGA
GCAGGGGCTCAAGGCATTCTGGCGAGGAAACATGACCAACATCATACGCT
ACTTTCCCACGCAGGCGTTCAACTTCGCATTCAAGGACACCATCAAGGGG
CTATTCCCCAAGGCTAACCCGAAGACCGAGTTCGGAAAGTTCTTTGCTAT
TAACATGGCCTCGGGTGGTCTAGCCGGCGCGGGTTCGCTCTGCTTCGTCT
ACCCGCTCGACTACGCGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12067:1153..1575+

>mRNA_Ecto-sp13_S_contig12067.1761.1 ID=mRNA_Ecto-sp13_S_contig12067.1761.1|Name=mRNA_Ecto-sp13_S_contig12067.1761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12067:1153..1575+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGAAAGCACAGTCAAACTTCCTAGTTGACTTCGCCCTCGGCGG
AGTCAGCGGAGCGGTCGCGAAGACTTGCACCGCGCCTATCGAGCGCGCGA
AGCTCATCATCCAGACGCAGGATGCCAACCCCAAGATCAAGTCGGGCGAG
ATCGCACGCTACAATGGGATCGGCGACTGCTTCTCCAGGGTGTACTCCGA
GCAGGGGCTCAAGGCATTCTGGCGAGGAAACATGACCAACATCATACGCT
ACTTTCCCACGCAGGCGTTCAACTTCGCATTCAAGGACACCATCAAGGGG
CTATTCCCCAAGGCTAACCCGAAGACCGAGTTCGGAAAGTTCTTTGCTAT
TAACATGGCCTCGGGTGGTCTAGCCGGCGCGGGTTCGCTCTGCTTCGTCT
ACCCGCTCGACTACGCGCGGTGA
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