mRNA_Ecto-sp13_S_contig67.17585.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: D8LCD1_ECTSI (Ribosomal protein L34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD1_ECTSI) HSP 1 Score: 223 bits (568), Expect = 2.540e-73 Identity = 112/119 (94.12%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 1 MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 357
MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKG CADA C+++LPGIKH+RPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA
Sbjct: 19 MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGVHCADASCSVALPGIKHMRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 137
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: A0A6V2RVW8_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2RVW8_HETAK) HSP 1 Score: 166 bits (419), Expect = 7.050e-51 Identity = 85/115 (73.91%), Postives = 94/115 (81.74%), Query Frame = 1
Query: 13 DGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 357
D R+ YTRRH Y TKSNK K KTPGG+LVAHY KK A GP C+D C L GIKHLRPK+YKNLKKR+KTVSRAYGGS CA CVRQR+VRAFLIEEQKIVKK+++EK KK KA
Sbjct: 4 DIRVQYTRRHCYATKSNKVKITKTPGGRLVAHYHKKKAAGPKCSD--CGTVLAGIKHLRPKQYKNLKKREKTVSRAYGGSACAGCVRQRIVRAFLIEEQKIVKKMIMEKMKKAKA 116
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: A0A835ZPJ0_9STRA (Ribosomal protein L34e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPJ0_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.900e-50 Identity = 86/112 (76.79%), Postives = 92/112 (82.14%), Query Frame = 1
Query: 10 GDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQK 345
GD R+TYTRRHAY T SNK K V+TPGGK VAHY KK A GP C D C I+LPGI LRPKEYKNLK+R+KTVSRAYGGS CA CVRQRVVRAFLIEEQKIVKK+L EK K
Sbjct: 3 GDKRVTYTRRHAYATASNKIKVVRTPGGKHVAHYRKKKANGPKCGD--CKIALPGIACLRPKEYKNLKRREKTVSRAYGGSRCAACVRQRVVRAFLIEEQKIVKKLLAEKIK 112
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: A0A7S2UXI2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXI2_9STRA) HSP 1 Score: 158 bits (400), Expect = 5.520e-48 Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1
Query: 13 DGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKK 354
D R+ Y RRH+Y TKSNK K VKTPGG+LVAHY K AKGP CA+ C ISLPGIKH+RP +YKN+KKR+KTV+RAYGGS C CV+ R+VRAFLIEEQKIVKK++ EK KKKK
Sbjct: 4 DIRVQYRRRHSYATKSNKIKIVKTPGGRLVAHYHTKKAKGPKCAE--CGISLPGIKHVRPIKYKNMKKREKTVTRAYGGSECGKCVKDRIVRAFLIEEQKIVKKMVAEKLKKKK 115
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: K3WQZ0_GLOUD (Uncharacterized protein n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WQZ0_GLOUD) HSP 1 Score: 157 bits (396), Expect = 2.110e-47 Identity = 84/113 (74.34%), Postives = 89/113 (78.76%), Query Frame = 1
Query: 19 RITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 357
R+TY RRH+Y TKSN KAVKTPGG LVA Y KK GP C D C SL GIKHL PKEYKN+ K Q+TVSRAYGGS CA CVRQR+VRAFLIEEQKIVKKVLLEK KKK A
Sbjct: 6 RVTYRRRHSYATKSNGIKAVKTPGGVLVAQYRKKRCAGPKCGD--CKQSLKGIKHLSPKEYKNVSKTQRTVSRAYGGSRCANCVRQRIVRAFLIEEQKIVKKVLLEKMKKKSA 116
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: M4B9E9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9E9_HYAAE) HSP 1 Score: 155 bits (392), Expect = 3.580e-46 Identity = 83/113 (73.45%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 19 RITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 357
RITY RRH+Y TKSN K VKTPGGKLVA Y +K A GP C D C SL GIKHL+PKEYKN+ K +TVSRAYGGS CA CVRQR+VRAFLIEEQKIVKKVLLEK KK K+
Sbjct: 51 RITYRRRHSYATKSNAIKPVKTPGGKLVAQYREKRAAGPKCGD--CKQSLKGIKHLKPKEYKNVSKTHRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLLEKLKKNKS 161
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: A0A485KJ51_9STRA (Aste57867_7967 protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KJ51_9STRA) HSP 1 Score: 153 bits (387), Expect = 5.610e-46 Identity = 82/113 (72.57%), Postives = 89/113 (78.76%), Query Frame = 1
Query: 19 RITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 357
RITY RRH+Y TKSN+ VKTPGGKLVAHY KK++ GP C D C SL GIKHL K YKN+ K +KTVSRAYGGS CA CVRQR+VRAFLIEEQKIVKKVLLEK KKK
Sbjct: 6 RITYRRRHSYATKSNRIVPVKTPGGKLVAHYRKKTSHGPKCGD--CKQSLKGIKHLATKAYKNIAKSEKTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKKKT 116
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: K8YVG6_NANGC (Large subunit ribosomal protein L34e n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVG6_NANGC) HSP 1 Score: 151 bits (382), Expect = 2.690e-45 Identity = 77/113 (68.14%), Postives = 89/113 (78.76%), Query Frame = 1
Query: 13 DGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKK 351
D R+TY RRHAY T+SN VKTPGG+L H +KK +GP C D C I+LPGIKHL+ KEYKNL KR++TVSRAYGGS CA CVR R+VRAFLIEEQKIVK+VL EK+ KK
Sbjct: 4 DTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGD--CKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: F0W7S6_9STRA (Ribosomal protein L34 putative n=2 Tax=Albugo TaxID=65356 RepID=F0W7S6_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.770e-45 Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 1
Query: 1 MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKK 351
MVR + R+ + RRH+Y TKSNK K VKTPGG+L AHY KK A GP C D C SL GI HLRPK YK L K Q+TVSRAYGGS CA CVR R+VRAFL+EEQKIVKKVLLEK K+K
Sbjct: 1 MVR-ERRVQFRRRHSYATKSNKIKVVKTPGGQLTAHYRKKRAAGPKCGD--CKQSLKGIAHLRPKVYKTLSKTQRTVSRAYGGSRCAKCVRNRIVRAFLVEEQKIVKKVLLEKMKRK 114
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Match: A0A7S2TCS5_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TCS5_PROMC) HSP 1 Score: 151 bits (381), Expect = 4.060e-45 Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 1
Query: 19 RITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAGCNISLPGIKHLRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKK 354
RITY RRH+Y TKSNK +AVKTPGG+L A Y+KK A GP C D C + LPGI LRPK+YKNL KR+K+VSRAYGG+ CA CVR+R+VRAFLIEEQK+VK++L +K KK K
Sbjct: 6 RITYKRRHSYATKSNKIRAVKTPGGRLTAQYIKKKAAGPKCGD--CAVRLPGIPALRPKQYKNLHKREKSVSRAYGGNRCAGCVRERIVRAFLIEEQKVVKRLLAQKAKKSK 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67.17585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig67.17585.1 >prot_Ecto-sp13_S_contig67.17585.1 ID=prot_Ecto-sp13_S_contig67.17585.1|Name=mRNA_Ecto-sp13_S_contig67.17585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGPICADAback to top mRNA from alignment at Ecto-sp13_S_contig67:8483..11223- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig67.17585.1 ID=mRNA_Ecto-sp13_S_contig67.17585.1|Name=mRNA_Ecto-sp13_S_contig67.17585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67:8483..11223- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67:8483..11223- >mRNA_Ecto-sp13_S_contig67.17585.1 ID=mRNA_Ecto-sp13_S_contig67.17585.1|Name=mRNA_Ecto-sp13_S_contig67.17585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67:8483..11223- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |