mRNA_Ecto-sp13_S_contig67.17587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67.17587.1
Unique NamemRNA_Ecto-sp13_S_contig67.17587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67.17587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67contigEcto-sp13_S_contig67:20402..20994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size593
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.7109704-UTR-Ecto-sp13_S_contig67:20401..205351681463920.7109704-UTR-Ecto-sp13_S_contig67:20401..20535Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67 20402..20535 +
1681463920.734887-UTR-Ecto-sp13_S_contig67:20853..209941681463920.734887-UTR-Ecto-sp13_S_contig67:20853..20994Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67 20854..20994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.7231565-CDS-Ecto-sp13_S_contig67:20535..208531681463920.7231565-CDS-Ecto-sp13_S_contig67:20535..20853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67 20536..20853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67.17587.1prot_Ecto-sp13_S_contig67.17587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67 20536..20853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67.17587.1

>prot_Ecto-sp13_S_contig67.17587.1 ID=prot_Ecto-sp13_S_contig67.17587.1|Name=mRNA_Ecto-sp13_S_contig67.17587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MMVVDHSCGSHLRALVSVFLLRHSHLLLNVRLHHWGTSNLLMWTQLPGFF
SSRCFSPCLPVSFLIARNDSAQWTVKESRFTWSHEITRFYTLVRTGHMTG
EKGPG*
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mRNA from alignment at Ecto-sp13_S_contig67:20402..20994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67.17587.1 ID=mRNA_Ecto-sp13_S_contig67.17587.1|Name=mRNA_Ecto-sp13_S_contig67.17587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=593bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67:20402..20994+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGAAGATGAAAGAGAAGAGACTTTTGCTACGCGCGTTTCCAGTGAGA
CACTTTCAGGTTTTGGTCGTGACCTGGACCACTGTTCGTACGTGAACCTA
CGAGTCTCCGAGTGCTGTGCTACCACCTACCACCATGATGGTAGTCGACC
ACAGCTGTGGGTCTCACCTACGCGCGCTGGTGTCTGTTTTCCTTTTGCGG
CATTCCCACCTGTTGTTGAACGTTAGACTACATCATTGGGGAACAAGTAA
TCTATTGATGTGGACACAGTTGCCGGGTTTTTTTTCTTCTCGATGCTTTT
CACCGTGCTTGCCCGTTTCGTTTTTAATCGCCAGAAATGATTCAGCCCAA
TGGACTGTGAAAGAAAGTCGATTTACATGGAGCCATGAAATTACTCGTTT
CTACACGTTAGTTCGGACCGGGCATATGACGGGAGAAAAGGGACCCGGCT
AAGTAGTTTGACTGCGCCGAGAACTCACGTCCCAACGTCGTCGATGATCG
CTGCGTTTACCAACTGCATCACCGGCGCGGTCGCGCGTCTCCATTCTATA
AACGCCGGGAGAAAGCGCTAATAACAATATTTTTCATGAGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67:20402..20994+

>mRNA_Ecto-sp13_S_contig67.17587.1 ID=mRNA_Ecto-sp13_S_contig67.17587.1|Name=mRNA_Ecto-sp13_S_contig67.17587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67:20402..20994+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGTAGTCGACCACAGCTGTGGGTCTCACCTACGCGCGCTGGTGTC
TGTTTTCCTTTTGCGGCATTCCCACCTGTTGTTGAACGTTAGACTACATC
ATTGGGGAACAAGTAATCTATTGATGTGGACACAGTTGCCGGGTTTTTTT
TCTTCTCGATGCTTTTCACCGTGCTTGCCCGTTTCGTTTTTAATCGCCAG
AAATGATTCAGCCCAATGGACTGTGAAAGAAAGTCGATTTACATGGAGCC
ATGAAATTACTCGTTTCTACACGTTAGTTCGGACCGGGCATATGACGGGA
GAAAAGGGACCCGGCTAA
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