mRNA_Ecto-sp13_S_contig6697.17581.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6697.17581.1
Unique NamemRNA_Ecto-sp13_S_contig6697.17581.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6697.17581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6697contigEcto-sp13_S_contig6697:3190..7118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size705
Hectar predicted targeting categoryother localisation
Exons5
Cds size636
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6697.17581.1prot_Ecto-sp13_S_contig6697.17581.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6697 3190..6259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.443395-CDS-Ecto-sp13_S_contig6697:3189..34401681463920.443395-CDS-Ecto-sp13_S_contig6697:3189..3440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6697 3190..3440 -
1681463920.4631422-CDS-Ecto-sp13_S_contig6697:4469..46131681463920.4631422-CDS-Ecto-sp13_S_contig6697:4469..4613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6697 4470..4613 -
1681463920.4752681-CDS-Ecto-sp13_S_contig6697:5292..54991681463920.4752681-CDS-Ecto-sp13_S_contig6697:5292..5499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6697 5293..5499 -
1681463920.5121937-CDS-Ecto-sp13_S_contig6697:6225..62591681463920.5121937-CDS-Ecto-sp13_S_contig6697:6225..6259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6697 6226..6259 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.5247266-UTR-Ecto-sp13_S_contig6697:6259..62761681463920.5247266-UTR-Ecto-sp13_S_contig6697:6259..6276Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6697 6260..6276 -
1681463920.548356-UTR-Ecto-sp13_S_contig6697:7067..71181681463920.548356-UTR-Ecto-sp13_S_contig6697:7067..7118Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6697 7068..7118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6697.17581.1

>prot_Ecto-sp13_S_contig6697.17581.1 ID=prot_Ecto-sp13_S_contig6697.17581.1|Name=mRNA_Ecto-sp13_S_contig6697.17581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
MNQPPPGGGPPGMGGPRPPGMGGPAPPGMGGPRPPGMGGPPPPGMGGPGG
PMMGGRGGQGPGQFRGGPPPGMQGGRGPGMGMGGPPGMPPMGMGGMGMHH
PQGGPGGPGMGGMGQPGMGGGSLSMGMGGMGGPRGGGPMGPGGPMGMRPP
PGGHFGGGPGVGFPPQQRAQQEMLMRAQQMQNQQMQQRSASQGGAAAAAA
LAAGGAGQQPRG
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mRNA from alignment at Ecto-sp13_S_contig6697:3190..7118-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6697.17581.1 ID=mRNA_Ecto-sp13_S_contig6697.17581.1|Name=mRNA_Ecto-sp13_S_contig6697.17581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3929bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6697:3190..7118- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGCGAAGGATTTGAGTGTCAAACCAAGGCAGTGGGAGGCTTGGTCAA
GGTGGGCGGAGAAGATTGTATTCGCTTGTGCGGTATCACGACAAACGCAT
GGGACAAAGGCAGGACAGGGTCAGGGATCCTCAAAACCACTGACACTGTC
AGCATCAGCAGCACAGCAGCAGCAGCAGCCAGGCGTAGACCACCGGGTCC
GTACTTGTCGTCGCGGATCTATCCGACGGGGGGCCAACACGCCTGGAGAA
GATAGTGCCTGCGAGCTGTTGCTATCGTTGTTGTTTCGCTGGGTGTGCCG
CTCTTTGCCTCCTGGTGACTTTGCTTTCGGCGGCTCACAGTCTTGATCTT
CGCTCTGAGCAAGTGTTGGTTTGTTGCGCCTGCTGACAGCCGCGTACAGA
GCAAAGGGATGTGCAAACATCGCCGCGCTGAGGAGAGAACGATACGTGTC
CGCGCGTCGTTGTGTGCTGTTCATTTGTGCACAGCGCTCTTCTTACTGCG
GGTTGCTTGTTGCGAAAAAGGCGTGCATTGATTATTTTGGTGGATTGAAC
GTCTGTGTTGCAGAGTTGCAATCTCTGAACACAGCACGGCGTTAGTCTAC
ACAGCAGCAGCTGATTCCCAGCAAAGGCACTGCTGGTATCTAGGTCGAGC
TGTAAAGATCAGATGTCGATACGAACAGCAGCACACGCAAACGGCATCGT
CAGTGTATTGGTGCAGTTGCGCTCTGAAGGCGTCGCGTTCTCTGTCACAG
CAATCATTCTTGTTCATTTCCCGCCTATCCCGCGTAACCCCGTACCCCCC
GCCCCTCCCCGTACAATGCTCCCCTGTTTTCTCACGTTGCAGAAGCGCGT
GAAGAAGCAATGAATCAACCGCCACCCGGCGGCGGGCCTCCCGGTAAGCA
AGAGAGCGTTTGCCGCTTGCTCGCTAAGTGCGGCGGCAACAAGTCTTTGT
CGCAACACCTTCCGATTTTGTTCACACCGTCACTCACGCAGTTCACAAAA
AAAATGAGCGAACGATATGTAGAGTCAAAAGTATTTTTTCTGTCTCAGAT
ACACACTGCAGCGGAAGGTACACGCCACCCCTACACTGCTTGTTTTGCGG
AGATGTCTTTGCCCTTAAGCCGCGCTGAATTGCAGCCTTGTCTGGCGGAA
TGCAGCTGTGCTCCTTACATATGGGGCGTATCATACGTGCTTTATGAGTA
GACACGAGACGCTGGAATGGTTTGTTGCGCATGGGGCAGGTTTACGATCG
CCCACCCCTTGCCTGTGGCTTTCGTCCCGAGATGGATATGTCGGGGATTG
AGGTATTTCGAATTATACTAGAACCGCTGTTGAGCTTTCATGTTTTGGGC
GCGGCGCGGGTAGAAGGCGGCGCGTTTTGCTCGGGCCTAGACCAGATTTT
CGCGGGCAGCCACTTGACTGTGTGCCCACCACTGCTGTGATGCTGTGTTG
CTTCGTTGTAATGTGAAAAGTGATGGAATCCTGTGAGCGTTGCTCTTCCC
CTGCATCCCCTATCCCCTCCCGCCCGCCTTTGGTCCACATGCTCGTTGTA
TCATATGCTACGGTGCTGCTGCTGAACCCACTTCCGCTACTGCTGCTGCT
GATGCCACTGCCGCTGCAGGCATGGGTGGGCCTCGTCCACCAGGAATGGG
CGGGCCTGCCCCTCCGGGAATGGGCGGTCCCCGTCCCCCGGGAATGGGCG
GGCCGCCGCCGCCCGGCATGGGGGGCCCCGGCGGACCGATGATGGGTGGA
CGAGGGGGGCAGGGACCGGGGCAGTTCCGCGGCGGGCCGCCCCCCGGGAT
GCAAGGGGGAAGAGGTCCTGGAATGGGTAAGTTGGGATAACTGGGAATGG
CAGGTGTTATGGAACAGGATAGTGCGGCATGTTTTTGTTTTTTTGTTTTC
TCCTGAATGATGATGGGGAGACAGAGGGGGATTGAGCTGGTGCTGCCTCT
CGGGATACGAAGGGCTTTGTTTGGTGGCTTGCTTGTTTCTGTGAAAATGG
GAATGGTGCGCAAGCGTACGGGAGAGACAGCATCGCCTTGTACCGTGGTT
ATTTTCCGAAGTGGAGATTTTGTTCCGCGCAGTCCCACAGTTCCTTCGGT
GCTTTCCTCTCGTGAGCACAGCAGCAGCAGGTATTTGCAGACCGCCTTGT
GTGCCGTTTGTACCACCTTTCCGTAGCCGTGCATGAAAGAAGTAGAAACA
GTCAGCAAGGACAAATCAGTTCAATTTAGTTGTGCGACACGCGGCATTTC
GCGCGGAGACGGCAGTTCAGCCGGCATGGAGCGCGGGAGGGGGGAGGTGT
TGGTGAGAAGAAGAAAAATAGCGTATCTTTGTTTTCGAACGAACGGGTCT
TGTCCCACAGTGCGAAGCCTTCCACGGCGGTCACGGCATTGCTTCTGATT
AGCCTCCGACAACGCACTGCCTCAATGTGTTTTTTTTCCAATCTACAAAC
CTGACGTGGTCCTTTATCCTATCTCTTTGTTGTGCCGTCATTTCTCGCTG
AAAAGGCATGGGAGGTCCACCTGGCATGCCGCCGATGGGGATGGGGGGAA
TGGGCATGCACCACCCCCAGGGAGGCCCCGGCGGGCCGGGAATGGGGGGA
ATGGGTCAGCCTGGCATGGGCGGCGGCTCCTTGTCGATGGGGATGGGAGG
TGCGTGAATGCCGCTTGCGAAAATTCAACAACTAGTGGCGCTTTTTGATC
GTGAAGGCGGTGTTTTCTTGTCGATGGGCATGAGAGGTGGGGGAAGACTG
ATGCGAAAACTCAACGACTACATTAAGAAGAGCGGTGTTTTCGCTCTCGG
ATAATCGGCGGTTCGTTGCCAAGGGAATGGGAGGTGATCGCCGAGAGTGA
TACCTCAACAACTAGCGGTGTTTCTGGTGTAGGCAGCGGTTTCTTGTCGA
TGGGCGTGGGAGGTGACAGCAGGAAAACTCACCAACTTGTGCAGTAGCTG
TGCTTCTGCTCGTGAAAGAGGAAGGCGGGTACAACGGGAGGCGAGCTCCG
GCCTTGCGAGCGTACACACCGCACTGCAGTGTTTGCTATTTTTGTTTATC
TGCGGTGTCTCGCGGCTTGTTATTGATGGAGGTGTTTGGAACGGAACGCT
AAAAATTTCACACCCAACTACTTTAGTTGGTAGTTGTTTGCCAGACAACT
TCTCTTCCCAGAGGGTGCGCACCTAGTTGCCTGCAGACACCTACTCTTCC
AGGAGTGTGCGCACCTAATTGCCTGCAGACACCTACTCTTCCAGGAGCGT
GCGCACCTAGTTGCCTGTAGATGACTACTCTTCCAGGAGCGCGCGCAACC
AGGTGTTTACGAACAACTCGCCGGTAGTTGTCCGGCAAACAACGAACTTA
GTTACTACTTGAAGTTGTACATGGTGTGAAAAATTCGAGTTGTAGCTTGT
AGCAAGTCTACCCCAGTGACATCCACGATACCGTGACACCTCATCGGCAA
CGATGGCTGGAGAGACACGCTACAGTAGCAGGTTGCTGAGCAACAACACA
AGCTCTTGTCACGCGCAACAACCACCAACGTCCCAGCTAACGCCTCCCCC
ACCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTCCTGCGGCCCA
TCCGTCCGCCGCCCCTGAACCGCTGTGCGATGCTCCCGCTGGATCAACGT
TTGACCGCCCCTTGACTGATCGAAAAAGGCATGGGTGGCCCCAGGGGCGG
CGGCCCAATGGGCCCCGGCGGCCCAATGGGAATGCGTCCTCCTCCGGGTG
GGCATTTCGGAGGGGGGCCGGGGGTCGGCTTCCCCCCCCAGCAGCGGGCA
CAGCAGGAGATGCTGATGCGGGCGCAGCAGATGCAGAACCAGCAGATGCA
GCAGCGCTCTGCCTCTCAGGGAGGAGCAGCCGCGGCGGCAGCGCTGGCGG
CGGGTGGCGCGGGGCAGCAGCCGAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6697:3190..7118-

>mRNA_Ecto-sp13_S_contig6697.17581.1 ID=mRNA_Ecto-sp13_S_contig6697.17581.1|Name=mRNA_Ecto-sp13_S_contig6697.17581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6697:3190..7118- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATCAACCGCCACCCGGCGGCGGGCCTCCCGGCATGGGTGGGCCTCG
TCCACCAGGAATGGGCGGGCCTGCCCCTCCGGGAATGGGCGGTCCCCGTC
CCCCGGGAATGGGCGGGCCGCCGCCGCCCGGCATGGGGGGCCCCGGCGGA
CCGATGATGGGTGGACGAGGGGGGCAGGGACCGGGGCAGTTCCGCGGCGG
GCCGCCCCCCGGGATGCAAGGGGGAAGAGGTCCTGGAATGGGCATGGGAG
GTCCACCTGGCATGCCGCCGATGGGGATGGGGGGAATGGGCATGCACCAC
CCCCAGGGAGGCCCCGGCGGGCCGGGAATGGGGGGAATGGGTCAGCCTGG
CATGGGCGGCGGCTCCTTGTCGATGGGGATGGGAGGCATGGGTGGCCCCA
GGGGCGGCGGCCCAATGGGCCCCGGCGGCCCAATGGGAATGCGTCCTCCT
CCGGGTGGGCATTTCGGAGGGGGGCCGGGGGTCGGCTTCCCCCCCCAGCA
GCGGGCACAGCAGGAGATGCTGATGCGGGCGCAGCAGATGCAGAACCAGC
AGATGCAGCAGCGCTCTGCCTCTCAGGGAGGAGCAGCCGCGGCGGCAGCG
CTGGCGGCGGGTGGCGCGGGGCAGCAGCCGAGGGGG
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