mRNA_Ecto-sp13_S_contig6694.17578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig6694.17578.1
Unique Name	mRNA_Ecto-sp13_S_contig6694.17578.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.740e-42
Identity = 80/92 (86.96%), Postives = 82/92 (89.13%), Query Frame = 1

Query:    1 FRGLLEKKWTSVVRLQRK----------ARKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            FRGLLEKKWTSVVRLQRK          A++DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW
Sbjct:   48 FRGLLEKKWTSVVRLQRKVMDLEARLDQAQQDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 139

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.430e-33
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1

Query:   55 ARKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            A+ DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW
Sbjct:   10 AQDDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 73

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A835Z701_9STRA (Lissencephaly-1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z701_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.670e-21
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1

Query:    7 GLLEKKWTSVVRLQRKARKDLKSGV--------------RPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSVVRLQRK   DL++ +              RPGREK AG   R+LPRAPAK +L GHR+ VT VA+HP+YS+VAS+SEDA+V++W
Sbjct:   50 GLLEKKWTSVVRLQRKVL-DLEAKLAAMVSEQSSAGGAQRPGREKAAGA--RLLPRAPAKHLLAGHRSSVTAVAMHPVYSLVASASEDASVRIW 140

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A8K1CCN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 2.170e-19
Identity = 51/93 (54.84%), Postives = 61/93 (65.59%), Query Frame = 1

Query:    7 GLLEKKWTSVVRLQRKAR------KDLKSGVRPG-----REKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSV+RLQRK        K L+   + G     R+   GG  +   LPR P K  LTGHRNP+TCVA HP++SV+ SSSEDAT+KVW
Sbjct:   35 GLLEKKWTSVIRLQRKVMELEGKVKQLEESSKLGGIVSRRDVVGGGRSKAEFLPRGPPKYSLTGHRNPITCVAFHPVFSVIVSSSEDATIKVW 127

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: K3WAC5_GLOUD (Lissencephaly-1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD)

HSP 1 Score: 89.4 bits (220), Expect = 4.790e-19
Identity = 55/104 (52.88%), Postives = 61/104 (58.65%), Query Frame = 1

Query:    7 GLLEKKWTSVVRLQRK----------------------ARKDLKSGVRPGREKGAGGSDR--VLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSV+RLQRK                      +R+DL  G       G GG  R   LPRAP K  LTGHR+PVTCVA HP++SV AS SEDATVKVW
Sbjct:   49 GLLEKKWTSVIRLQRKVMELENKVQLLEETAKLGNGVVSRRDLLGG-------GIGGRPRSEFLPRAPPKYALTGHRSPVTCVAFHPVFSVFASGSEDATVKVW 145

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A225W249_9STRA (Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225W249_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.500e-19
Identity = 52/92 (56.52%), Postives = 61/92 (66.30%), Query Frame = 1

Query:    7 GLLEKKWTSVVRLQRKARK------DLKSGVRPG----REKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSV+RLQRK  +       L+  V+ G    R    G   R   LPRAPAK  LTGHR+P+TCVA HP++SV+ S SEDATVKVW
Sbjct:   49 GLLEKKWTSVIRLQRKVMELETKVAQLEENVKLGGVLSRRDVLGARQRTEFLPRAPAKFSLTGHRSPITCVAFHPVFSVLVSGSEDATVKVW 140

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A7S0SXC9_9STRA (Lissencephaly-1 homolog n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXC9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.150e-19
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1

Query:    4 RGLLEKKWTSVVRLQRKA----------RKDLKSGVRP-GREKGA-------GGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            +G+LEKKWTSVVRLQ++           +K LKSG+   G E          G ++R++P+ PAK  L+GHR PVTC+A HP+YS+VAS SED+T+K+W
Sbjct:   49 KGILEKKWTSVVRLQKRVMELETQLNDLQKQLKSGIATNGIENDTLKTNATIGENNRLIPKGPAKASLSGHRGPVTCIATHPIYSLVASGSEDSTIKLW 147

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A0C3FII8_PILCF (Nuclear distribution protein PAC1 n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3FII8_PILCF)

HSP 1 Score: 88.6 bits (218), Expect = 8.190e-19
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1

Query:    1 FRGLLEKKWTSVVRLQRKA------RKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            F GLLEKKWTSV+RLQ+K          L+  +     K A      +PRAPA  VLTGHR+P+T VA HP YS++ASSSEDATVK+W
Sbjct:   48 FAGLLEKKWTSVIRLQKKIMDLENRNSALQEELSLSPAKRAASQTDWVPRAPAAHVLTGHRSPITAVAFHPQYSIIASSSEDATVKIW 135

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: M4BL66_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL66_HYAAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.070e-18
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 1

Query:    7 GLLEKKWTSVVRLQRKA----------RKDLKSGVRPGREKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSV+RLQRK            +  K G    R    G   R   LPR PAK  LTGHR+P+TCVA HP++SV+AS+SEDATVKVW
Sbjct:   28 GLLEKKWTSVIRLQRKVMELETKVAQLEETAKLGGVLSRRDVLGARQRAEFLPRVPAKLTLTGHRSPITCVAFHPVFSVLASASEDATVKVW 119

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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A4Q2DJH5_9AGAR (Nuclear distribution protein PAC1 n=4 Tax=Psathyrellaceae TaxID=184208 RepID=A0A4Q2DJH5_9AGAR)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1

Query:    1 FRGLLEKKWTSVVRLQRKARK---DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            + GLLEKKWTSV+RLQ+KA+     L+  +     K A      LPRAPA  VLTGHR P+T VA HP YS++AS+SEDATVK+W
Sbjct:   48 YTGLLEKKWTSVIRLQKKAKNRNAQLQEELSLSPAKRAAAQTDWLPRAPAAHVLTGHRAPLTRVAFHPQYSILASASEDATVKIW 132

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1C0_ECTSI	2.740e-42	86.96	Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JKZ3_9PHAE	4.430e-33	96.88	Ge1_WD40 domain-containing protein (Fragment) n=1 ...	[more]
A0A835Z701_9STRA	2.670e-21	58.51	Lissencephaly-1 homolog n=1 Tax=Tribonema minus Ta...	[more]
A0A8K1CCN7_PYTOL	2.170e-19	54.84	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
K3WAC5_GLOUD	4.790e-19	52.88	Lissencephaly-1 homolog n=1 Tax=Globisporangium ul...	[more]
A0A225W249_9STRA	6.500e-19	56.52	Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID...	[more]
A0A7S0SXC9_9STRA	8.150e-19	48.48	Lissencephaly-1 homolog n=1 Tax=Chromulina nebulos...	[more]
A0A0C3FII8_PILCF	8.190e-19	54.55	Nuclear distribution protein PAC1 n=1 Tax=Piloderm...	[more]
M4BL66_HYAAE	1.070e-18	55.43	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
A0A4Q2DJH5_9AGAR	1.110e-18	56.47	Nuclear distribution protein PAC1 n=4 Tax=Psathyre...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6694	contig	Ecto-sp13_S_contig6694:6833..8040 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	152.1
Seed ortholog evalue	1.1e-34
Seed eggNOG ortholog	2880.D7G1C0
Model size	246
KEGG rclass	RC00037,RC00094
KEGG ko	ko:K16794
KEGG Reaction	R04452
KEGG Pathway	ko00565,ko01100,map00565,map01100
Hectar predicted targeting category	other localisation
GOs	GO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
Exons	2
EggNOG free text desc.	cell division
EggNOG OGs	KOG0295@1,KOG0295@2759
Cds size	246
COG Functional cat.	D
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463920.3552196-CDS-Ecto-sp13_S_contig6694:6832..6893	1681463920.3552196-CDS-Ecto-sp13_S_contig6694:6832..6893	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6694 6833..6893 +
1681463920.3660522-CDS-Ecto-sp13_S_contig6694:7855..8040	1681463920.3660522-CDS-Ecto-sp13_S_contig6694:7855..8040	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6694 7856..8040 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6694.17578.1	prot_Ecto-sp13_S_contig6694.17578.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig6694 6833..8040 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig6694:6833..8040+
coding sequence from alignment at Ecto-sp13_S_contig6694:6833..8040+

protein sequence of mRNA_Ecto-sp13_S_contig6694.17578.1

>prot_Ecto-sp13_S_contig6694.17578.1 ID=prot_Ecto-sp13_S_contig6694.17578.1|Name=mRNA_Ecto-sp13_S_contig6694.17578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
FRGLLEKKWTSVVRLQRKARKDLKSGVRPGREKGAGGSDRVLPRAPAKGV
LTGHRNPVTCVALHPLYSVVASSSEDATVKVW

mRNA from alignment at Ecto-sp13_S_contig6694:6833..8040+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig6694.17578.1 ID=mRNA_Ecto-sp13_S_contig6694.17578.1|Name=mRNA_Ecto-sp13_S_contig6694.17578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1208bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6694:6833..8040+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGTGGTTTGCTGGAGAAGAAATGGACGTCTGTCGTTCGCCTCCAGAG
AAAGGCGAGGAGTTGCGAGGCTTAGCTATTATTGGCCTTGCACGGCTGAT
TTGCATGCGTCGTTGCTCGTTGTAGCTTAAGTTTACTGCTGTGTCCTGGA
GACCATCTCGCCTTCTGTGGGTATTGTGATACATGGTATGCATATGCTGT
TTGTATTTTCCTTGCGATAACCCTAGCACAGGTGAAAGCGTATTTGCTGT
TGTTTATTGCCAGCACAACGAAGCGAGACCCGTGTTCATACTGGCAAACA
GAGTCCGACGGAGTACAACAGCAGGGGAGGTGGGTTGGAAGAATTGCTCG
CTGTTTCTGGTGCCGCTACAGAAGGCCATCTAACATGAAACAGAGAGAGA
AGTTGCGTTTCAAGAGCGAGTGAACCGTGTCTTGCCAGTTTAATTCTTGG
AGAGGAGTGCGGACGTCTGCAGCCCCACGTGGATGTAGGTCGACGTTTTA
TGGTGGAGAACCGCTAGAAGAACCTGCTACAAACGAAGCGGCACCCTACA
GCTAAGGGATCAGGGCCGTGGTTGGTGCTTAGATCTTGCGCAGCAGTAGC
GTACCCTCTTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTCCTA
TCAATGGTTGTCCTAGTTGTCGTTGATCTTCCTGAATGCTGAACTTTCTC
CACCGACTTCGGTGCTGGGTGTTGGCGGTCCTTTCCCGCTCTGCTGTACC
TACAGATATCATAGGTGCTCTGCTATCCCTGGTTACATTCCCATCGGTCG
CTGTGTACTTGCATCTGGGGTGCATTTGACTTGGCTGTAGATAATCGTTC
CGGAGATACGAACATTGTGATTCAACGGAACACGCCCATGTGCTCCAGAA
ACCGAGAAGATTCTGGGTCCAACATGCCCCGTCGCCGTTGCTCTCCGTCT
GCCTCTCTCCTCTACACTACTCTCTACCATTCACAGGTCATGGACCTCGA
GGCGCGATTGGACCAGGCGCAAGAAGACCTCAAGAGCGGGGTCAGACCAG
GGAGAGAAAAGGGCGCTGGCGGGAGCGATCGCGTGTTGCCGAGGGCGCCG
GCGAAGGGCGTGCTCACTGGACACCGGAACCCGGTCACGTGCGTGGCTCT
GCATCCGCTCTACAGCGTCGTCGCTTCCTCCAGCGAGGACGCCACGGTCA
AGGTATGG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6694:6833..8040+

>mRNA_Ecto-sp13_S_contig6694.17578.1 ID=mRNA_Ecto-sp13_S_contig6694.17578.1|Name=mRNA_Ecto-sp13_S_contig6694.17578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6694:6833..8040+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGTGGTTTGCTGGAGAAGAAATGGACGTCTGTCGTTCGCCTCCAGAG
AAAGGCGAGGAAAGACCTCAAGAGCGGGGTCAGACCAGGGAGAGAAAAGG
GCGCTGGCGGGAGCGATCGCGTGTTGCCGAGGGCGCCGGCGAAGGGCGTG
CTCACTGGACACCGGAACCCGGTCACGTGCGTGGCTCTGCATCCGCTCTA
CAGCGTCGTCGCTTCCTCCAGCGAGGACGCCACGGTCAAGGTATGG