prot_Ecto-sp13_S_contig66905.17567.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig66905.17567.1
Unique Nameprot_Ecto-sp13_S_contig66905.17567.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length65
Homology
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.570e-13
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query:   36 MATPVNPKPFLNELTGKPVMVKLKWGMEYK 65
            MATPVNPKPFLNELTGKPVMVKLKWGMEYK
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYK 30          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A1S3ID19_LINUN (Sm protein F n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3ID19_LINUN)

HSP 1 Score: 64.7 bits (156), Expect = 7.200e-12
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0
Query:   11 RGVRECGCERRSRVATDKSSEEGQTMAT-PVNPKPFLNELTGKPVMVKLKWGMEYK 65
            RG R C C  R      ++ +E +  +T P+NPKPFLN LTGKPVMVKLKWGMEYK
Sbjct:    6 RGSRCCACAERVESVRKRNRQEKEMASTLPMNPKPFLNGLTGKPVMVKLKWGMEYK 61          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A2I0AWL2_9ASPA (Putative small nuclear ribonucleoprotein F n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AWL2_9ASPA)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-11
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0
Query:   30 SEEGQTMATPVNPKPFLNELTGKPVMVKLKWGMEYK 65
            +E+G   + PVNPKPFLN LTGKPV+VKLKWGMEYK
Sbjct:   41 AEQGSDQSVPVNPKPFLNNLTGKPVIVKLKWGMEYK 76          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A218XIQ4_PUNGR (Sm protein F n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218XIQ4_PUNGR)

HSP 1 Score: 63.2 bits (152), Expect = 5.880e-11
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0
Query:   31 EEGQTMATPVNPKPFLNELTGKPVMVKLKWGMEYK 65
            E G T   PVNPKPFLN LTGKPV+VKLKWGMEYK
Sbjct:   59 ERGDTSTIPVNPKPFLNNLTGKPVIVKLKWGMEYK 93          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A177WM22_BATDL (Sm protein F n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WM22_BATDL)

HSP 1 Score: 60.8 bits (146), Expect = 7.180e-11
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
Query:   39 PVNPKPFLNELTGKPVMVKLKWGMEYK 65
            PVNPKPFLNELTGKP+MVKLKWGMEYK
Sbjct:    5 PVNPKPFLNELTGKPIMVKLKWGMEYK 31          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A6I9KAW7_CHRAS (Sm protein F n=2 Tax=Eutheria TaxID=9347 RepID=A0A6I9KAW7_CHRAS)

HSP 1 Score: 61.6 bits (148), Expect = 9.660e-11
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0
Query:   24 VATDKSSE---EGQTMATPVNPKPFLNELTGKPVMVKLKWGMEYK 65
            V  D S +   EG  ++ P+NPKPFLN LTGKPVMVKLKWGMEYK
Sbjct:    9 VVADNSDDAFLEGLCVSLPLNPKPFLNGLTGKPVMVKLKWGMEYK 53          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A1S4C443_TOBAC (Sm protein F n=23 Tax=Magnoliopsida TaxID=3398 RepID=A0A1S4C443_TOBAC)

HSP 1 Score: 60.5 bits (145), Expect = 1.630e-10
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0
Query:   36 MATPVNPKPFLNELTGKPVMVKLKWGMEYK 65
            M+ PVNPKP+LN LTGKPVMVKLKWGMEYK
Sbjct:    1 MSVPVNPKPYLNNLTGKPVMVKLKWGMEYK 30          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A4D9EQG6_9SAUR (Sm protein F n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9EQG6_9SAUR)

HSP 1 Score: 61.2 bits (147), Expect = 1.640e-10
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0
Query:   35 TMATPVNPKPFLNELTGKPVMVKLKWGMEYK 65
            TM+ P+NPKPFLN LTGKPVMVKLKWGMEYK
Sbjct:   31 TMSLPLNPKPFLNGLTGKPVMVKLKWGMEYK 61          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A199VBT5_ANACO (Sm protein F n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VBT5_ANACO)

HSP 1 Score: 59.3 bits (142), Expect = 1.720e-10
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0
Query:   37 ATPVNPKPFLNELTGKPVMVKLKWGMEYK 65
            A PVNPKPFLN LTGKPV+VKLKWGMEYK
Sbjct:    3 AVPVNPKPFLNNLTGKPVIVKLKWGMEYK 31          
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Match: A0A0D9S0Q8_CHLSB (Sm protein F n=4 Tax=Boreoeutheria TaxID=1437010 RepID=A0A0D9S0Q8_CHLSB)

HSP 1 Score: 61.2 bits (147), Expect = 1.880e-10
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0
Query:   35 TMATPVNPKPFLNELTGKPVMVKLKWGMEYK 65
            TM+ P+NPKPFLN LTGKPVMVKLKWGMEYK
Sbjct:   37 TMSLPLNPKPFLNGLTGKPVMVKLKWGMEYK 67          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66905.17567.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI8.570e-13100.00Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A1S3ID19_LINUN7.200e-1258.93Sm protein F n=1 Tax=Lingula unguis TaxID=7574 Rep... [more]
A0A2I0AWL2_9ASPA2.700e-1175.00Putative small nuclear ribonucleoprotein F n=1 Tax... [more]
A0A218XIQ4_PUNGR5.880e-1180.00Sm protein F n=1 Tax=Punica granatum TaxID=22663 R... [more]
A0A177WM22_BATDL7.180e-1196.30Sm protein F n=2 Tax=Batrachochytrium dendrobatidi... [more]
A0A6I9KAW7_CHRAS9.660e-1166.67Sm protein F n=2 Tax=Eutheria TaxID=9347 RepID=A0A... [more]
A0A1S4C443_TOBAC1.630e-1086.67Sm protein F n=23 Tax=Magnoliopsida TaxID=3398 Rep... [more]
A0A4D9EQG6_9SAUR1.640e-1087.10Sm protein F n=1 Tax=Platysternon megacephalum Tax... [more]
A0A199VBT5_ANACO1.720e-1089.66Sm protein F n=1 Tax=Ananas comosus TaxID=4615 Rep... [more]
A0A0D9S0Q8_CHLSB1.880e-1087.10Sm protein F n=4 Tax=Boreoeutheria TaxID=1437010 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 28..65
e-value: 2.1E-7
score: 32.4
NoneNo IPR availablePANTHERPTHR11021:SF2coord: 36..65
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 36..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66905contigEcto-sp13_S_contig66905:170..364 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66905.17567.1mRNA_Ecto-sp13_S_contig66905.17567.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig66905 170..364 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig66905.17567.1 ID=prot_Ecto-sp13_S_contig66905.17567.1|Name=mRNA_Ecto-sp13_S_contig66905.17567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
GRSKRDCKDSRGVRECGCERRSRVATDKSSEEGQTMATPVNPKPFLNELT
GKPVMVKLKWGMEYK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016487Lsm6/sSmF