prot_Ecto-sp13_S_contig6689.17563.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6689.17563.1
Unique Nameprot_Ecto-sp13_S_contig6689.17563.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length240
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6689.17563.1 vs. uniprot
Match: A0A6H5L6W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W9_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 4.910e-59
Identity = 94/107 (87.85%), Postives = 96/107 (89.72%), Query Frame = 0 
Query:    1 MNNKCFQRLALPLLLAGALSGFAAVDATNPCLDSEAEEFKCWLNPGELHLNLAGCAITDSDAQDLLTCVDRVSHDPVNEVSLGHNELTQLPDGVFADLTALRFLYLD 107
            MNN CFQRLALPLL AGALSGFA+VDA NPCLD  AEEFKCWLNPGELHLNL GC ITDSDAQDL TCVD VSHDPVNEVSLG N+LTQLPDGVFADLT LRFLYLD
Sbjct:    1 MNNTCFQRLALPLLAAGALSGFASVDAINPCLDPAAEEFKCWLNPGELHLNLIGCDITDSDAQDLSTCVDSVSHDPVNEVSLGQNKLTQLPDGVFADLTYLRFLYLD 107
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BLAST of mRNA_Ecto-sp13_S_contig6689.17563.1 vs. uniprot
Match: D7FSS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS8_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 9.040e-57
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 0 
Query:    1 MNNKCFQRLALPLLLAGALSGFAAVDATNPCLDSEAEEFKCWLNPGELHLNLAGCAITDSDAQDLLTCVDRVSHDPVNEVSLGHNELTQLPDGVFADLTALRFLYLDE 108
            M NKCFQ+LALPLL+AGALSGFAAVDA NPCLD EA E KCWLNPGELHLNLAGCAITDSDAQDL  CVD VSHDPVNEVSLG+NELTQLPDGVFADLTALRFLYL+E
Sbjct:    1 MKNKCFQKLALPLLVAGALSGFAAVDAINPCLDPEAIEHKCWLNPGELHLNLAGCAITDSDAQDLSACVDSVSHDPVNEVSLGYNELTQLPDGVFADLTALRFLYLEE 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6689.17563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6W9_9PHAE4.910e-5987.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSS8_ECTSI9.040e-5788.89Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 218..238
e-value: 100.0
score: 6.0
coord: 194..213
e-value: 33.0
score: 9.7
coord: 122..141
e-value: 37.0
score: 9.4
coord: 98..117
e-value: 51.0
score: 8.3
NoneNo IPR availablePANTHERPTHR45836:SF16LEUCINE-RICH REPEAT AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 2coord: 48..157
coord: 157..230
coord: 104..181
NoneNo IPR availablePANTHERPTHR45836FAMILY NOT NAMEDcoord: 48..157
coord: 157..230
coord: 104..181
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.778
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 41..231
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 146..169
e-value: 1.2E-4
score: 31.5
coord: 79..97
e-value: 62.0
score: 6.7
coord: 170..193
e-value: 4.0
score: 16.4
coord: 98..121
e-value: 2.8E-5
score: 33.5
coord: 122..145
e-value: 1.5E-4
score: 31.1
coord: 194..217
e-value: 0.002
score: 27.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 157..238
e-value: 1.1E-19
score: 72.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 26..156
e-value: 1.7E-25
score: 91.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 125..183
e-value: 3.6E-16
score: 58.7
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 221..232
e-value: 1.4
score: 9.8
coord: 101..121
e-value: 0.66
score: 10.7
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 172..193
score: 5.409
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 220..239
score: 5.263
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 196..217
score: 6.588
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 148..169
score: 6.257
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 100..121
score: 7.227
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 124..145
score: 6.457

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6689contigEcto-sp13_S_contig6689:4505..7672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6689.17563.1mRNA_Ecto-sp13_S_contig6689.17563.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6689 4505..7672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6689.17563.1 ID=prot_Ecto-sp13_S_contig6689.17563.1|Name=mRNA_Ecto-sp13_S_contig6689.17563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MNNKCFQRLALPLLLAGALSGFAAVDATNPCLDSEAEEFKCWLNPGELHL
NLAGCAITDSDAQDLLTCVDRVSHDPVNEVSLGHNELTQLPDGVFADLTA
LRFLYLDENSLTSLPSEAFSGMSLLQRLYLDNNDLSELPEGVFDGLSSLE
ELDLGSNALSALDNGVFDGLGALQKLSLDDNSLGGIDGGVFDDLESLQQL
QLQDNQLSTLPRGLFVVLSGLTHLDLSNNPDLQCLPTPG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt