mRNA_Ecto-sp13_S_contig6681.17554.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6681.17554.1
Unique NamemRNA_Ecto-sp13_S_contig6681.17554.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6681.17554.1 vs. uniprot
Match: D7FVI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI0_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 2.310e-94
Identity = 209/292 (71.58%), Postives = 213/292 (72.95%), Query Frame = 2 
Query:  410 QTNISGGSRKXXXXXXXXXXXXXXXXXXXXFRTDSSSRLLAXXXXX--EARXXXXADVATISAGADGVFTSSRGAMTNKSEMMGAFYGRDGTMHENGADFRRNASLSTGETACPTPSTKFKPAPATASRAAAAVTSDDDLTDTDEGVMARLADFTEMARRTAAHNEELSQELAAEKRRVAHSTRKLEQSHITCTELRESLALAQDTVVKLREHEMAWAESTASEMSLRSEMCALKDEYAGVSGDASTLRKRCDVLERENAELVERFATMAEEKRQMESKARRLLRSDRYRGY 1279
            QTNISGGSRK    XXXXXXXXXXXXXXXX           XXXXX  EAR     DVAT S GADG    SR A+TNKSE+MGA YGRDGT  ENGADFRRNASL TG+TACPTPSTK  PAPATASRAA A TSDDDLTDTDEGVMARLA+F EMARRTAAHNE                                        VVKLREHEMAWAESTASEMSLRSEMCALKDEYAGVSGDAS LRKRCDVLERENAELVERFATMAEEKRQMESKARRLLRSDRYRGY
Sbjct:    8 QTNISGGSRKKSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARAAADVDVATTSTGADGELKYSREALTNKSEIMGASYGRDGTTPENGADFRRNASLGTGKTACPTPSTKSVPAPATASRAAGAATSDDDLTDTDEGVMARLAEFIEMARRTAAHNE----------------------------------------VVKLREHEMAWAESTASEMSLRSEMCALKDEYAGVSGDASALRKRCDVLERENAELVERFATMAEEKRQMESKARRLLRSDRYRGY 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6681.17554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVI0_ECTSI2.310e-9471.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6681contigEcto-sp13_S_contig6681:1220..5598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2033
Hectar predicted targeting categoryother localisation
Exons6
Cds size1134
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6681.17554.1prot_Ecto-sp13_S_contig6681.17554.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6681 1810..4847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463918.629773-UTR-Ecto-sp13_S_contig6681:1219..12621681463918.629773-UTR-Ecto-sp13_S_contig6681:1219..1262Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6681 1220..1262 +
1681463918.6415167-UTR-Ecto-sp13_S_contig6681:1704..18091681463918.6415167-UTR-Ecto-sp13_S_contig6681:1704..1809Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6681 1705..1809 +
1681463918.7059357-UTR-Ecto-sp13_S_contig6681:4847..55981681463918.7059357-UTR-Ecto-sp13_S_contig6681:4847..5598Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6681 4848..5598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463918.6519587-CDS-Ecto-sp13_S_contig6681:1809..25021681463918.6519587-CDS-Ecto-sp13_S_contig6681:1809..2502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6681 1810..2502 +
1681463918.6623702-CDS-Ecto-sp13_S_contig6681:3288..33481681463918.6623702-CDS-Ecto-sp13_S_contig6681:3288..3348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6681 3289..3348 +
1681463918.6734502-CDS-Ecto-sp13_S_contig6681:3886..40061681463918.6734502-CDS-Ecto-sp13_S_contig6681:3886..4006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6681 3887..4006 +
1681463918.6853282-CDS-Ecto-sp13_S_contig6681:4313..44891681463918.6853282-CDS-Ecto-sp13_S_contig6681:4313..4489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6681 4314..4489 +
1681463918.6940587-CDS-Ecto-sp13_S_contig6681:4762..48471681463918.6940587-CDS-Ecto-sp13_S_contig6681:4762..4847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6681 4763..4847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6681.17554.1

>prot_Ecto-sp13_S_contig6681.17554.1 ID=prot_Ecto-sp13_S_contig6681.17554.1|Name=mRNA_Ecto-sp13_S_contig6681.17554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=378bp
MDKHQQQQSRSGSPSLSSPHALCDGGGVAGAGEQSTPTGSTVVPAAGYHD
RGTPSRSSSSSTRPSASGAMLDNRLAPRPTRSWDTAFQTNISGGSRKKSS
TAISTAAATAAAAAAAAFRTDSSSRLLASTAAVEARAAAAADVATISAGA
DGVFTSSRGAMTNKSEMMGAFYGRDGTMHENGADFRRNASLSTGETACPT
PSTKFKPAPATASRAAAAVTSDDDLTDTDEGVMARLADFTEMARRTAAHN
EELSQELAAEKRRVAHSTRKLEQSHITCTELRESLALAQDTVVKLREHEM
AWAESTASEMSLRSEMCALKDEYAGVSGDASTLRKRCDVLERENAELVER
FATMAEEKRQMESKARRLLRSDRYRGY*
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mRNA from alignment at Ecto-sp13_S_contig6681:1220..5598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6681.17554.1 ID=mRNA_Ecto-sp13_S_contig6681.17554.1|Name=mRNA_Ecto-sp13_S_contig6681.17554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6681:1220..5598+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGACGACCTGCAAGCGCAGCAACACACGCGTCTCCGTAGCGGTGAGCC
AGACATGCGACGGATGTATACATTCTTCTTTGCGGATGGCCGACAACCTC
CAGGGATATTTTGGCGGACCTTTTTTTTTACCGCAATGCACAGACTACAT
ACACTGCGGCTGTTCCCGGCTGTTCCCACACCAATCACCGGCCGCAAACC
GCTTAGGGTAACTGCGACATCCTGATGCAGTTCTTGGTTGGTCTTGCGGT
AGCAATAAGATCTCGTACGTATGTGATGTAGACGTTCTCCCGAAACTACG
GCCCGGGGTTCATTAGTCACTGCACATCGACATGTGTAAGTAGACTACGC
ACGCTCCGGTCTCACTACTGCTATAGCCGCTACTGCTGTGGCTGCTGCTG
CGGTGGCTGCTGCTGGTACTAGTTCCCGTTCCACCTCCATTCGCATACTT
GGGCTCAGTCCGATTCCCTCCCCTGGTAGCCGCAGACACCGGGAACAGAG
CCGGCCGTCCTTCAGCAATTTTCATCATTGTGCTGCATCGAAAAACCTTC
GTTCGTTGGCGAGGGCGAGGCTTGGCAACTACTCCGGAGCATGGACAAGC
ATCAGCAACAGCAGTCACGGTCTGGGTCGCCTTCCCTCTCTTCTCCCCAC
GCGCTTTGCGATGGCGGTGGGGTCGCTGGAGCAGGTGAACAATCCACGCC
TACAGGGTCAACGGTGGTTCCAGCGGCGGGATACCACGACCGTGGAACCC
CGTCGAGGTCGTCATCGTCATCGACGAGACCTTCGGCATCGGGTGCTATG
CTCGACAACCGGCTTGCACCGCGACCTACGCGTTCGTGGGACACTGCGTT
TCAGACCAACATCAGCGGCGGTAGCAGAAAAAAGAGCAGCACAGCTATTT
CCACCGCTGCCGCTACCGCCGCCGCCGCCGCCGCCGCCGCGTTCCGTACC
GATTCGTCCAGCAGACTGCTTGCATCCACCGCAGCAGTCGAAGCACGGGC
GGCAGCCGCCGCCGATGTTGCAACCATATCCGCTGGCGCCGACGGCGTGT
TTACGTCCAGCAGGGGAGCCATGACCAACAAATCCGAAATGATGGGCGCA
TTCTACGGTAGAGACGGTACAATGCATGAGAATGGTGCCGATTTCCGAAG
GAATGCCAGCTTGAGCACGGGTGAGACAGCTTGCCCTACCCCCAGCACGA
AGTTTAAGCCTGCTCCAGCCACCGCATCAAGGGCTGCAGCAGCCGTAACG
AGCGATGACGACCTCACGGATACGGATGAGGGTGTGAGTGACTTGAGCCC
CTGTGGAAAGTGTGATGTCCTTGGGCAAACAGTTCTTGCTCTGAAGAAGG
AATGCTTGTCACTACTCGATCTCGGCCTCGGCTGCTATGATACCTCCGGG
TGAAAGCGCTATTTTTTCACTGCAGTTTGTCGGTTTGCCTGGCTCTTCGT
AATCGAGACACGTACTGATGATCGTGCCATGGCATATCCAAACAACAGCA
GAACAAATTTTGAAAGGCCGATAGCGGTGTTTCGTCCGGTGAAAGGTATT
GCGGTATGCGGACGAAACCTTTGGTTGACGCTGCCTCCAAGACCTGCTAC
CCTCAACAAACGTGTAACGCAGTTGCCAGGACAGGACGCGCGTCCAGCAT
GTGAGCACCATTGCCTCCAGTCTAACACCCCTCTGCAGCTTGCGCACGAT
TGTGCCGATGCCTTCCAGTAATCCCCTGCGGTTGCCCTCATAACGTGTCT
CTTCGTCGGAGCGGTCTTGTCTTACGCTTGGCATCCTACAGTAGTGTTCG
ATGACGACGATGACTCTTGGTAGGCACCCTCCTCACCTTCCGATTCTAGT
GTAAAGAGGTGGCATGTTATGGTGTCTACACAATTTCGAGGGGGCTACCT
AACTCCGTCCAATAGTTAACTATCGATCCTTCGCACCTCCTGACGGTGCA
GACCCGCTTGTTCTGTCCGCCCATGGGTGGTTACGTTCAGTCCTGGAACT
GTTTCTTTCAACTGACAGTATGTGTGTCTATTCCTCGACTCAGCGCGTGT
ATATCTTCTGGTTCATTAGGTGATGGCCAGGCTGGCGGACTTCACCGAAA
TGGCCAGGCGAACCGCCGCCCACAACGAAGTGAGAGTGAGAGGGATTCTG
TAGCAGCTTGGTGTAGTCTCCACATGGCAGTTCATCAGATCTGAACAAAA
GCATGTTCGAAAAGATATTTCGCGGGTCAAGGCCATTGCACTAAAACCGG
ATCGGTGACAGGGAAGCGGGTCAGCTGGAATACGCGCACCCACGTATCCG
CTCCCCGTTACGGGAAACCGAGGTGATCTTTGCCCGCCGCCGCCTCCTCC
AAACACGAAACAAATTTATGTCCTACGGCCTTATGAGAAAAGACTGTTCC
ACTCTGAGTGAATAAATACCGTTGTCCATCTATCGGGAGTAGATGCCGAG
GAGGGTTGGGTACCTCCACGCACTGCTCTCACAATATCTCGAAATCTTAC
ACCAATAGTGAAGGGAGAGCACGGGGTCACGTGTCATGTGAATTGGCGAG
TCATTTAGTAAACCTAACTGATGTCGAAGTGAAGCAGCAATCATTAACTC
AACACCCGAGCGGCTTTACTGGGAGCATTAACTCTGCGTGTGTACATTTT
CTGAACGAAACACGCAGGAGCTATCTCAGGAGCTGGCTGCTGAGAAGAGG
CGGGTCGCGCACAGCACCCGCAAGCTAGAACAAAGCCACATCACATGCAC
CGAACTCAGAGAATCTCTGGCGCTGGCGCAAGATACGGTGTGAAAGTTGT
TTTCCTTCGTGTTCCATCCACGTCTTGACGAATGCCTGTAGTCTAGTGTG
TTAACGCGCGTAGGAAATTTCAGTCAGTGCTGAGCGGGATTCACTCTGTC
CCCAAAACGTGGTCTACGCACATCCTACGTCGTTCAAGTGTTCTTGAGCC
CCCAGGTCAAAAAGAGAGATATGCAACTCATTCCAGTCATTGCAAATCAC
GCCCCTTCGGTCGACGGGACTTTCGATACCGGTCCTCCCCACAGCCAAGA
CAAACGTTCACAGCTACATTTGAGCCATACTCTCTCAATACCAGGTTGTG
AAGCTACGTGAGCACGAGATGGCCTGGGCCGAGAGCACAGCCAGCGAGAT
GTCCCTGAGGTCGGAGATGTGCGCGCTCAAAGACGAGTACGCTGGCGTTT
CCGGAGACGCCTCGACACTCAGAAAGCGTTGCGATGTGCTCGAGCGGGAG
AACGCTGAACTCGTAGAGAGGCAAGCGGCGGTAGCATGCCCACCTCTTGG
TTTGCTTCGCAGCGCGCGAAACGTGACGTGATGACATCGTCACTTCCAGC
TGCACCGTCGAAAGTACCACGTGTTTTGCTGTTGAAGCTGGACCCATGCT
ATGTCCTGATGCTCTCTCCCGGGCTCCCTCAAACCCCGTACGCTTCTGCT
ACGATTATTATCTGCTCTTGTTGGAGAATCTCTTCTCTATTACGCAGCAT
ACGCCGTTGTATTTGTCCAAGCACAAGTTTGTTCTCGTGCCAGGTTTGCG
ACGATGGCGGAAGAGAAGAGGCAGATGGAATCCAAGGCGCGCCGGCTGCT
GAGAAGCGACAGGTACCGCGGCTACTGAATCCAACGAGAAGTACGTGGTT
CGTTCGTGTGGAGGGGCCCAGCGAGAATGATTTGAAACACCCAGGACAGG
GAGAAACGAGACACACATGTCGGCCAGAAGTTATCAAATGAGACGACCGC
GCGTGTCTACCTGCCGTCTAGTTGAGAAGGGCTTTTCTCGTCCTGTAGCG
TCCACACATGTTCTTGTTGTCATTACATGTAGTCTAGTGAAGATCACCTG
GTTTCAGCGAAAGCTCCTCCCTTTCTCTTCAGTGTTTGTTCTCCGGTGTT
GTGCTGGACCCCTGGGCTGTGTGCATCATCGATCGCTTGGTAAGCAAAAC
TTCTCGAGTATGAAGGCGAAGAGAATGGTGGGGGGCCCCTTCTCGCCCAC
AACGGATGTTTTCGATTGCAATCGATAGCCCGTCACAGCAAGCGAGCGGC
CGGAGGTTGAATGTGATGGGCGTGAGAGTCTGTAGACTTTCGGGGATCGA
AAGCGTCAAGCTTACCGCTCCGCTGATCGGTCGCCTCTTCATTGGTGTAC
ACAGTTGGTTCTGGGTCTCAAATCTAGTTAGTTCGTCGCGGGGCTTTCTT
GGCATGGTTTGCGATGTCTTGACGCCCCTCGCGTCTCCTTTCATTATTTT
TTCGTGCTGTCGGCGTATGGCCTGGTGGGTTTCGGCGGCTGTTGGTGCAA
ATCGTGTTTATTCGTGGCCAGTGTTCGCTACGTTGGCCGCCCCATCAATG
AAGCATGTCCATTGCACAATTTCCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6681:1220..5598+

>mRNA_Ecto-sp13_S_contig6681.17554.1 ID=mRNA_Ecto-sp13_S_contig6681.17554.1|Name=mRNA_Ecto-sp13_S_contig6681.17554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6681:1220..5598+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAAGCATCAGCAACAGCAGTCACGGTCTGGGTCGCCTTCCCTCTC
TTCTCCCCACGCGCTTTGCGATGGCGGTGGGGTCGCTGGAGCAGGTGAAC
AATCCACGCCTACAGGGTCAACGGTGGTTCCAGCGGCGGGATACCACGAC
CGTGGAACCCCGTCGAGGTCGTCATCGTCATCGACGAGACCTTCGGCATC
GGGTGCTATGCTCGACAACCGGCTTGCACCGCGACCTACGCGTTCGTGGG
ACACTGCGTTTCAGACCAACATCAGCGGCGGTAGCAGAAAAAAGAGCAGC
ACAGCTATTTCCACCGCTGCCGCTACCGCCGCCGCCGCCGCCGCCGCCGC
GTTCCGTACCGATTCGTCCAGCAGACTGCTTGCATCCACCGCAGCAGTCG
AAGCACGGGCGGCAGCCGCCGCCGATGTTGCAACCATATCCGCTGGCGCC
GACGGCGTGTTTACGTCCAGCAGGGGAGCCATGACCAACAAATCCGAAAT
GATGGGCGCATTCTACGGTAGAGACGGTACAATGCATGAGAATGGTGCCG
ATTTCCGAAGGAATGCCAGCTTGAGCACGGGTGAGACAGCTTGCCCTACC
CCCAGCACGAAGTTTAAGCCTGCTCCAGCCACCGCATCAAGGGCTGCAGC
AGCCGTAACGAGCGATGACGACCTCACGGATACGGATGAGGGTGTGATGG
CCAGGCTGGCGGACTTCACCGAAATGGCCAGGCGAACCGCCGCCCACAAC
GAAGAGCTATCTCAGGAGCTGGCTGCTGAGAAGAGGCGGGTCGCGCACAG
CACCCGCAAGCTAGAACAAAGCCACATCACATGCACCGAACTCAGAGAAT
CTCTGGCGCTGGCGCAAGATACGGTTGTGAAGCTACGTGAGCACGAGATG
GCCTGGGCCGAGAGCACAGCCAGCGAGATGTCCCTGAGGTCGGAGATGTG
CGCGCTCAAAGACGAGTACGCTGGCGTTTCCGGAGACGCCTCGACACTCA
GAAAGCGTTGCGATGTGCTCGAGCGGGAGAACGCTGAACTCGTAGAGAGG
TTTGCGACGATGGCGGAAGAGAAGAGGCAGATGGAATCCAAGGCGCGCCG
GCTGCTGAGAAGCGACAGGTACCGCGGCTACTGA
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