mRNA_Ecto-sp13_S_contig66733.17547.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66733.17547.1
Unique NamemRNA_Ecto-sp13_S_contig66733.17547.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66733.17547.1 vs. uniprot
Match: D8LF72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF72_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.960e-38
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 GRLPVRVYLTLPHEELDKDNPVADNSGGGGRKDSVGGVCDEKPTPWSGDGGLVSWNRVKLFSDGSLG 201
            GRLPVRVYLTLPHEELDKDNPVADN GGGGRK+SVGGVCDEKPTPWSGDGGLVSWNRVKLFSDGSLG
Sbjct:  263 GRLPVRVYLTLPHEELDKDNPVADNFGGGGRKESVGGVCDEKPTPWSGDGGLVSWNRVKLFSDGSLG 329
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BLAST of mRNA_Ecto-sp13_S_contig66733.17547.1 vs. uniprot
Match: A0A6H5L9Q1_9PHAE (Amidohydro_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Q1_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.430e-37
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 GRLPVRVYLTLPHEELDKDNPVADNSGGGGRKDSVGGVCDEKPTPWSGDGGLVSWNRVKLFSDGSLG 201
            GRLPVRVYLTLPHEELDKDNPVADNSGGGGRK+SVG VCD+KPTPWSG+GGLVSWNRVKLFSDGSLG
Sbjct:   53 GRLPVRVYLTLPHEELDKDNPVADNSGGGGRKESVGEVCDKKPTPWSGNGGLVSWNRVKLFSDGSLG 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66733.17547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF72_ECTSI1.960e-3897.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9Q1_9PHAE1.430e-3794.03Amidohydro_3 domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66733contigEcto-sp13_S_contig66733:53..253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score143.3
Seed ortholog evalue4.2e-32
Seed eggNOG ortholog2880.D8LF72
Model size201
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
EggNOG OGs2QSHE@2759,COG1574@1
Cds size201
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.969374-CDS-Ecto-sp13_S_contig66733:52..2531681463917.969374-CDS-Ecto-sp13_S_contig66733:52..253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66733 53..253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66733.17547.1prot_Ecto-sp13_S_contig66733.17547.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66733 53..253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66733.17547.1

>prot_Ecto-sp13_S_contig66733.17547.1 ID=prot_Ecto-sp13_S_contig66733.17547.1|Name=mRNA_Ecto-sp13_S_contig66733.17547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
GRLPVRVYLTLPHEELDKDNPVADNSGGGGRKDSVGGVCDEKPTPWSGDG
GLVSWNRVKLFSDGSLG
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mRNA from alignment at Ecto-sp13_S_contig66733:53..253-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66733.17547.1 ID=mRNA_Ecto-sp13_S_contig66733.17547.1|Name=mRNA_Ecto-sp13_S_contig66733.17547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66733:53..253- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACGGCTCCCTGTTCGTGTTTACCTGACGCTGCCCCACGAAGAGCTCGA
CAAGGACAACCCTGTCGCCGACAACAGCGGTGGCGGTGGAAGAAAGGACA
GCGTAGGAGGGGTGTGCGATGAAAAGCCGACACCGTGGTCCGGGGACGGA
GGCCTGGTGTCTTGGAACCGAGTGAAGCTCTTCTCCGACGGGTCGTTAGG
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66733:53..253-

>mRNA_Ecto-sp13_S_contig66733.17547.1 ID=mRNA_Ecto-sp13_S_contig66733.17547.1|Name=mRNA_Ecto-sp13_S_contig66733.17547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66733:53..253- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACGGCTCCCTGTTCGTGTTTACCTGACGCTGCCCCACGAAGAGCTCGA
CAAGGACAACCCTGTCGCCGACAACAGCGGTGGCGGTGGAAGAAAGGACA
GCGTAGGAGGGGTGTGCGATGAAAAGCCGACACCGTGGTCCGGGGACGGA
GGCCTGGTGTCTTGGAACCGAGTGAAGCTCTTCTCCGACGGGTCGTTAGG
T
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