mRNA_Ecto-sp13_S_contig6648.17508.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6648.17508.1
Unique NamemRNA_Ecto-sp13_S_contig6648.17508.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6648.17508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6648contigEcto-sp13_S_contig6648:6283..7956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size429
Hectar predicted targeting categorymitochondrion
Exons3
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463914.7384176-CDS-Ecto-sp13_S_contig6648:6282..63291681463914.7384176-CDS-Ecto-sp13_S_contig6648:6282..6329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6648 6283..6329 -
1681463914.7682824-CDS-Ecto-sp13_S_contig6648:6444..67091681463914.7682824-CDS-Ecto-sp13_S_contig6648:6444..6709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6648 6445..6709 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463914.780726-UTR-Ecto-sp13_S_contig6648:6709..67331681463914.780726-UTR-Ecto-sp13_S_contig6648:6709..6733Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6648 6710..6733 -
1681463914.7992136-UTR-Ecto-sp13_S_contig6648:7863..79561681463914.7992136-UTR-Ecto-sp13_S_contig6648:7863..7956Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6648 7864..7956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6648.17508.1prot_Ecto-sp13_S_contig6648.17508.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6648 6283..6709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6648.17508.1

>prot_Ecto-sp13_S_contig6648.17508.1 ID=prot_Ecto-sp13_S_contig6648.17508.1|Name=mRNA_Ecto-sp13_S_contig6648.17508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MSFLRRAIPLGHFQGKVPSSAFGKWQEPCGTYRRWYVFDNAYGLDADPVI
YDWVVDRYLRPMLWMPSEDWGAFVLLGWVQLCGLKVHKVVGVVDTRLASM
DVYV
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mRNA from alignment at Ecto-sp13_S_contig6648:6283..7956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6648.17508.1 ID=mRNA_Ecto-sp13_S_contig6648.17508.1|Name=mRNA_Ecto-sp13_S_contig6648.17508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1674bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6648:6283..7956- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGCTTGATGAAGGACGCTATCGTGGCGGCAAAGAGGAAGCTATAACGA
ACAGCACCAGGTGTTCGTTCTAGGGCGTACTACAACTGGAACGGTGAGGG
CTATGTGTTTATTCAAACTTGTATGGGGTACATTGGGACAGGTACCCGTG
CGCGGCCAGAAAGGACGACTCGCCGGCCGATAACTGTTCTTCTTCTCCCC
TCCTGCCCCCACCCCCCCGCCAATCTCGGGGCAGTTTCCACTTTCATGTT
GCCCCCTGTGTTATTGCAAGGTCATCGCGGCTCGGCGCGCGGGCAACGCG
ATGAGCACGCAATTCAGACGTAGCCATTTGGGATTTGGTTTTCCAATGGT
TGACCGAGAAAAGTTGGTGTTTCTCTGTCATATTTCTGCGAATCCCCCAA
GCAGATCTAACACAGATGTACTCACCAAGTGGCTTCGGCCGACAACGGCC
AATGCAACGTGGTGCGAAGAGGTGCCTTGCGGTGCCGTTGGAGCGCACCC
CCTGCCGCGTAGGTGCACCGCTTGCCGCAAACTTGTCACTACTGGAGCGA
GATGGAACCACCGCAATGAGCAGCGCCCCTCAGATTTCTACGTAGAAACA
GCCGTGCCGCACCGCAAGGTCATGCGGCTATACCTCGCACCGCACTATAT
ATCGGGGAAGGCTAGTGTGAAATCCGCCGCACATGTCACCCTTCGTGATC
TGGAGCACAAGGCAAGCGTCTCCCGTGGTGTGGACAAGGGCGGGCGGTGG
AGTAATTGTCAGTGTGCTCGATCTAAGGAGACCCCGCACCGGGGAGTGGC
AGCGTTAGGGTTGCTAATAATTGGTTTGGCTCCTCAATAGGGTTAAGGGA
TTGGATGCCGGAACTATGTTCTGGATACACGCATAAGTGATGGTGTTTTA
GTTGTATAGTACTCCTTCGTGGGCATGCTCTAATCCGGTGAGATGGCCCT
CAACCAAATGCCCAGGTCAACATAGATTGGCACCTCAAAAGGCTTCGAGT
CGGCACTACAAAAAGCTAGGGGGCAGATGGTTGTCCGCGTTCCGGGCTAT
ACACGTGCGAGGTTCCCATCGTCGTTTCTTTCGTGATCACTGGGAGTACT
CGTTTGTGTTGTTGTTGGTGCTGCTGGGAGCCCAGTAATCTCTTGCGAAA
GGTGGTTTGATCGCGGAACACGACACCGCCCGCCTGTGTTCGCTGTCTTG
TCCGTTGGTCGCCCTCCGTTAAGCTCCCTTGTTTGTGGGAGCTCTAGATG
TCGTTTCTACGCCGGGCCATTCCGTTGGGCCATTTCCAAGGGAAGGTTCC
TTCGAGCGCGTTTGGGAAGTGGCAAGAACCGTGCGGGACATACCGGCGTT
GGTACGTCTTCGACAATGCGTACGGCCTAGACGCTGACCCAGTCATATAC
GACTGGGTCGTTGATCGCTACCTTCGTCCGATGCTCTGGATGCCCTCTGA
AGATTGGGGAGCGTTCGTTCTGTTGGGGTGGGTACAGCTCTGCGGACTCA
AGGTGCACAAAGGCAAGTATATTAGTGAAAAGAGGAATATTGGTGGGGGG
ACTCGACGACAACGAAGCTAACGCGAAAGTAAACGCACAAGCCCTTTACC
CCGTCTTGTGCTCACCCCGTGTCACAGTCGTTGGCGTTGTGGACACGAGG
CTCGCCAGCATGGACGTCTATGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6648:6283..7956-

>mRNA_Ecto-sp13_S_contig6648.17508.1 ID=mRNA_Ecto-sp13_S_contig6648.17508.1|Name=mRNA_Ecto-sp13_S_contig6648.17508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6648:6283..7956- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTTTCTACGCCGGGCCATTCCGTTGGGCCATTTCCAAGGGAAGGT
TCCTTCGAGCGCGTTTGGGAAGTGGCAAGAACCGTGCGGGACATACCGGC
GTTGGTACGTCTTCGACAATGCGTACGGCCTAGACGCTGACCCAGTCATA
TACGACTGGGTCGTTGATCGCTACCTTCGTCCGATGCTCTGGATGCCCTC
TGAAGATTGGGGAGCGTTCGTTCTGTTGGGGTGGGTACAGCTCTGCGGAC
TCAAGGTGCACAAAGTCGTTGGCGTTGTGGACACGAGGCTCGCCAGCATG
GACGTCTATGTT
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