mRNA_Ecto-sp13_S_contig6646.17506.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI) HSP 1 Score: 956 bits (2472), Expect = 0.000e+0 Identity = 874/1110 (78.74%), Postives = 897/1110 (80.81%), Query Frame = 1
Query: 1 GKGRAPRFRLATRRSSLLKEDTGGDSGTHKDGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTSTEDGRV-----KREATTANSVQNLLIEVPARQRSRVLENVVTYYSKGSHAVVITGSTAECDELADGRTFKTLTSQVLSGDDREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVGFRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAENNSADTELLLAKCLATIARMADRKTDVAASDDEADTEXXXXXXXXXXXXXXXXXXHKKEQYPIPGGSAESVLQADTPVEDSLNDWQYLTPDDEVSISTSDAHQPSAASPSQPASNQVASTATPVVVRAVPERAVRAAEASTAAIRSKGKGTGGAXXXXXXXXXXXXXXXXXXXXXXXDGDCVAVDAIKRHDSAKMGLDLSGEGDRVGVPENIVTGPLQVQQVQEGQAASSAPAPAAQGVSETAVKAAKASAEAVAAKNNASGAPGGTPGXXRXKXXXVCEXXXXXXXXXSNCIIVDADKGPESMKLGLGLSEGGGIDGVLKDASPLEDIVAGGAAAVVGGTSGEAQHDGETQEAGEDEEGEALWNEDSDEEVDVAPAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRHGVSVPDHSPSDDCESVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRAAASTGINYAAFNEGLPLEDLESDDGGSVEVTGKKRPRTTKSGSQSKPKRRRGTDELGRLQPNRSSSXXXXEEEVFGEDCDDVAIPPTNGAPTAKGRAAGRQVPTRSRRGATPPGESPSPLRSLENTDDGSGADTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHENVMWYTYLEFLAKAVQGGGKGAAFMEKFDSIKHAFTDYRKAIKNFEGRVCTIRESVAAGGSWNQEFM 3315
GKGRAPR +LATR SSLL EDTGGDSG KD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX XXXX XXXXXXXXXXXXXXXXXXXXXXXXXX GTSTED RV K+E T ANSVQNL IEVPA QRSRVLEN+VTYYSKGSHAVVI GS AECDELADGRTFKTLTSQVLSGDDREQ+IKGFLTKGVKVLVVT VDARGI+MSDIDLVVHYRPPRDADCY HRS RME+A RPGVTVTL AENE+CD+RNIEQRVGFRFECRAVPSEEQMM LAVM ARQQIKGVSDDRAEFFRGAAQELLAE+ SADTELLLAKCLATIARM DRKTDVAASDDEADTEXXXXXXXXXXXXXXXXX HKKEQ PIP GSAESVLQADT ED LNDWQYLTPDDEVSIS SDAH SAASPSQPASNQ ASTAT VVVRAVPERAV+AAEASTAAIRSK KGT GAXXXXXXXXXXXXXXXXXXXXXXX+ DCVAVDA+K DSAKMGLDLSGEGDRVG+PENIVTGPLQV+Q QEGQAA SAPA AAQGVSETAVKAAKASAEAV AKNNASGAPGGTPGXXR KXXX XXXXXXXX S+ IIVDADKGPES KLGLGLS GGGIDGVL+DAS L+DIVAGG A VVG TSGEAQ GETQE G+DEEGEALWNEDSDEEVDVAPAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXPRRAAASTGINYAA +EGL EDLE+ +GRAAG QV TRSRRGATPPGESPSPLRSLENTDDGSGA TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EHENVMWYTYLEFLAKAVQGGGKGAAFMEKFDS +HAFTDYRKAIKNFEGRVCTIRES+AAGGSWNQEFM
Sbjct: 22 GKGRAPRSQLATRTSSLLMEDTGGDSGADKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXDEEXXXXIEXXXXXXXXXXXXXXXXXXXXXXXXXXEGTSTEDNRVVPLQVKQEVTNANSVQNLFIEVPAWQRSRVLENIVTYYSKGSHAVVIAGSKAECDELADGRTFKTLTSQVLSGDDREQSIKGFLTKGVKVLVVTDVDARGINMSDIDLVVHYRPPRDADCYVHRSDRMERAVRPGVTVTLYAENEICDIRNIEQRVGFRFECRAVPSEEQMMALAVMLARQQIKGVSDDRAEFFRGAAQELLAEDKSADTELLLAKCLATIARMTDRKTDVAASDDEADTEXXXXXXXXXXXXXXXXXQHKKEQCPIPEGSAESVLQADTTGEDGLNDWQYLTPDDEVSISASDAHHSSAASPSQPASNQAASTATSVVVRAVPERAVKAAEASTAAIRSKRKGTRGAXXXXXXXXXXXXXXXXXXXXXXXNSDCVAVDAVKGQDSAKMGLDLSGEGDRVGLPENIVTGPLQVRQEQEGQAALSAPAAAAQGVSETAVKAAKASAEAVTAKNNASGAPGGTPGXXRGKXXXXXXXXXXXXXXYSDRIIVDADKGPESTKLGLGLSAGGGIDGVLEDASSLQDIVAGGGATVVGDTSGEAQDYGETQEGGKDEEGEALWNEDSDEEVDVAPAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------XXXPRRAAASTGINYAAIHEGLSPEDLET-----------------------------------------------------------------------RGRAAG-QVRTRSRRGATPPGESPSPLRSLENTDDGSGAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EHENVMWYTYLEFLAKAVQGGGKGAAFMEKFDSKRHAFTDYRKAIKNFEGRVCTIRESIAAGGSWNQEFM 1000
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: D8LE98_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE98_ECTSI) HSP 1 Score: 272 bits (695), Expect = 3.860e-73 Identity = 151/230 (65.65%), Postives = 172/230 (74.78%), Query Frame = 1
Query: 403 TEDGRVKREATTANSVQNLLIEVPARQRSRVLENVVTYYSKGSHAVVITGSTAECDELADGRTFKTLTSQVLSGD----DREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVG--FRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAENNSADTELLLAKCLATIAR 1074
T D K A +V++L IEV +R RS +LE+++TYY KGSHA+V T S AECDELADG+TFKTLTSQVL GD R+QTIK F KG +VLV T V ARGID+SDIDLVV YRPPRD D Y HRSGR +AGRPGV VTL AENE+ D+R IEQ VG FRFE AVPS EQ+M+LA AR+QIKGVSDD +FFR +AQELLAE S D ELLLAKCLA IAR
Sbjct: 468 TVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLEDIITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLLAKCLAAIAR 697
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: A0A836CKS6_9STRA (RNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS6_9STRA) HSP 1 Score: 196 bits (498), Expect = 3.110e-49 Identity = 117/222 (52.70%), Postives = 146/222 (65.77%), Query Frame = 1
Query: 439 ANSVQNLLIEVPARQRSRVLENVVTYYSKGSHAVVITGSTAECDELADGRTFKTLTSQVLSGD----DREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVG--FRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAENNS----ADTELLLAKCLATIAR 1074
A +V++L IE P+R R+ +LE+V+ Y KGS A+V T + ECDELA G FKTL+SQVL GD RE TI F +VLV T V ARGID+S+IDLVV YRPP D D Y HRSGR +AGR G VTL A+NE D++ IE+ +G F+FE AVPS Q+M +A A + + VS D FF AA+ELLAE+ + DTE LLA+CLA IAR
Sbjct: 275 ATTVKHLAIETPSRNRAHMLEDVIAVYGKGSRAIVFTQTKRECDELAAGNAFKTLSSQVLHGDIGQNQREVTIGQFRKGQFQVLVATDVAARGIDISEIDLVVQYRPPTDPDTYVHRSGRTGRAGRLGTCVTLFADNERRDVQKIEKAIGKGFKFERAAVPSATQVMEVAGKVALKALDTVSADVVPFFTPAARELLAESQADGAELDTEQLLARCLAAIAR 496
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: A0A6H5JE12_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE12_9PHAE) HSP 1 Score: 176 bits (447), Expect = 1.580e-45 Identity = 94/109 (86.24%), Postives = 97/109 (88.99%), Query Frame = 1
Query: 433 TTANSVQNLLIEVPARQRSRVLENVVTYYSKGSHAVVITGSTAECDELADGRTFKTLTSQVLSGDDREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDA 759
T+AN VQNLLIEVPARQRSRVLEN+VTYYSKGSHAVVITGS AECDELADGRTFKTLTSQ TIKGFLTKGVKVLVV+ VDARGIDMSDIDLVVHYRPPRDA
Sbjct: 195 TSANIVQNLLIEVPARQRSRVLENIVTYYSKGSHAVVITGSKAECDELADGRTFKTLTSQ---------TIKGFLTKGVKVLVVSDVDARGIDMSDIDLVVHYRPPRDA 294
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: A0A835ZP19_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP19_9STRA) HSP 1 Score: 143 bits (360), Expect = 3.200e-31 Identity = 87/165 (52.73%), Postives = 107/165 (64.85%), Query Frame = 1
Query: 610 QVLSGD----DREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVG--FRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAENNSA----DTELLLAKCLATIAR 1074
QVL GD RE TI F +VLV T V ARGID+S+IDLVV YRPP D D Y HRSGR +AGR GV VTL A+NE DM+ IE+ VG F+FE VPS Q+M +A A + + VS++ FF AA+EL+AE+ ++ DTE LLA+CLA IAR
Sbjct: 377 QVLHGDIGQNQREVTIGQFRKSQFQVLVATDVAARGIDISEIDLVVQYRPPTDPDTYVHRSGRTGRAGRSGVCVTLYADNERRDMQKIERAVGKGFKFERAPVPSPAQVMEVAGTVALKSLTAVSEEVVPFFSSAAKELIAESTASEGGLDTEKLLARCLAAIAR 541
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: A0A7S4R924_9STRA (RNA helicase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R924_9STRA) HSP 1 Score: 132 bits (332), Expect = 9.650e-28 Identity = 77/185 (41.62%), Postives = 107/185 (57.84%), Query Frame = 1
Query: 538 VVITGSTAECDELADGRTFKTLTSQVLSGD----DREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVG--FRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAENNSADTELLLAKCLATIAR 1074
+V T + + DEL G FK+LT+Q L GD R+ T+ F VLV T V ARGID++D+DLV+ + PPRD D Y HRSGR +AGR G +V L N+ D+ IE+ +G F+FE PS E +T A + + V ++ A+FF AA LL N D + ++A+CLA I+R
Sbjct: 407 IVFTETKRDADELVSGSIFKSLTAQALHGDVGQKQRDATLAAFRAGAFNVLVATDVAARGIDITDVDLVIQFEPPRDVDTYVHRSGRTGRAGRKGTSVLLFRPNQSRDIVKIERSLGHGFKFELAGPPSIEAALTAAAKTSAIACRSVPEETAKFFTDAAGSLL--ENGEDPQEVVARCLAAISR 589
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: A0A1Y1JG62_PLAGO (RNA helicase n=1 Tax=Plasmodium gonderi TaxID=77519 RepID=A0A1Y1JG62_PLAGO) HSP 1 Score: 125 bits (313), Expect = 1.400e-25 Identity = 72/221 (32.58%), Postives = 128/221 (57.92%), Query Frame = 1
Query: 436 TANSVQNLLIEVP--ARQRSRVLENVVTYYSKGSHAVVITGSTAECDELADGRTFKTLTSQVLSGD----DREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVGFRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAENNSA--DTELLLAKCLATIAR 1074
T+ +++++ I+ P ++++ +LE+++ S G ++ T + E D L +FK+L+ VL G+ RE T++ F ++L+ T + ARG+D+S++DLVV PP A+ Y HRSGR +A + GV+V L + + D+ IE+ G +F +P+ E + T A A ++I+ V++D FF A EL+ + N+ D L+A+CLA I++
Sbjct: 365 TSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFSVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVVQCFPPNYAEIYIHRSGRTGRANKKGVSVVLFSNEDKQDLIKIEKNCGIKFSIEQLPNNEDVFTCASNIASKKIQNVNEDVLPFFHKTANELVEKYNNLHIDHTELVARCLALISK 585
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: A0A6N2KC64_SALVM (RNA helicase n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KC64_SALVM) HSP 1 Score: 121 bits (304), Expect = 1.200e-24 Identity = 65/213 (30.52%), Postives = 116/213 (54.46%), Query Frame = 1
Query: 424 REATTANSVQNLLIEVPARQRSRVLENVVTYYSKGSHAVVITGSTAECDELADGRTFKTLTSQVLSGD----DREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVGFRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAENNSADTELLLA 1050
+E A ++ I A + +L ++VT Y+KG ++ T + + DE++ T +++ S+ L GD RE+T+ GF VLV T V +RG+D+ ++DL++HY P D + + HRSGR +AG+ G + + ++ +R++E+ G +FE + P+ E+++ + +KGV D EFF AQ+L+ E ++ LA
Sbjct: 310 QEEKLAEGIKLYAISTTATSKRTILSDLVTVYAKGGKTIIFTRTKRDADEVSMALT-QSIASEALHGDISQPQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLERDAGCKFEFASPPAIEELLESSAEQVAATLKGVHPDSIEFFTPTAQKLIEEQGTSALAAALA 521
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: A0A8J4VC43_9ROSI (RNA helicase n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VC43_9ROSI) HSP 1 Score: 119 bits (297), Expect = 1.320e-24 Identity = 64/202 (31.68%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 424 REATTANSVQNLLIEVPARQRSRVLENVVTYYSKGSHAVVITGSTAECDELADGRTFKTLTSQVLSGD----DREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVGFRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAE 1017
RE A ++ + A + +L +++T Y+KG +V T + + DE++ T ++ S+ L GD RE+T+ GF VLV T V ARG+D+ ++DLV+HY P D + + HRSGR +AG+ G + + ++ +R++E+ VG +FE + P+ E+++ + + GV + EFF AQ+L+ E
Sbjct: 4 REEKLAEGIKLFALSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMSLT-NSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGNAILMFTSSQRRTVRSLERDVGCKFEFVSAPAVEEVLESSAEHVVATLSGVHPESVEFFTPTAQKLIEE 204
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Match: A0A2R6R165_ACTCC (RNA helicase n=3 Tax=Actinidia TaxID=3624 RepID=A0A2R6R165_ACTCC) HSP 1 Score: 122 bits (305), Expect = 1.510e-24 Identity = 67/209 (32.06%), Postives = 115/209 (55.02%), Query Frame = 1
Query: 439 ANSVQNLLIEVPARQRSRVLENVVTYYSKGSHAVVITGSTAECDELADGRTFKTLTSQVLSGD----DREQTIKGFLTKGVKVLVVTHVDARGIDMSDIDLVVHYRPPRDADCYAHRSGRMEKAGRPGVTVTLCAENEMCDMRNIEQRVGFRFECRAVPSEEQMMTLAVMPARQQIKGVSDDRAEFFRGAAQELLAENNSADTELLLAK 1053
A ++ I + +L ++VT+Y+KG A+V T + + DE++ T ++ S+ L GD RE+T+ GF VLV T V ARG+D+ ++DL++HY P D + + HRSGR +AG+ G + + ++ +R++E+ VG +FE + PS E+++ L+ + GV + EFF AQ+L+ E + LA+
Sbjct: 334 AEGIKLYAIPTTTTSKRTILSDLVTFYAKGGKAIVFTQTKRDADEVSVALT-TSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGSAILMFTSSQRRTVRSLERDVGCKFEFISPPSVEEVLELSAEQVVATLSGVHPESVEFFTPTAQKLIEEQGTGALAAALAQ 541 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6646.17506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6646.17506.1 >prot_Ecto-sp13_S_contig6646.17506.1 ID=prot_Ecto-sp13_S_contig6646.17506.1|Name=mRNA_Ecto-sp13_S_contig6646.17506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1106bp GKGRAPRFRLATRRSSLLKEDTGGDSGTHKDGEDGAEEDGKDQEEEEEEEback to top mRNA from alignment at Ecto-sp13_S_contig6646:1061..7888- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6646.17506.1 ID=mRNA_Ecto-sp13_S_contig6646.17506.1|Name=mRNA_Ecto-sp13_S_contig6646.17506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6646:1061..7888- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6646:1061..7888- >mRNA_Ecto-sp13_S_contig6646.17506.1 ID=mRNA_Ecto-sp13_S_contig6646.17506.1|Name=mRNA_Ecto-sp13_S_contig6646.17506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6646:1061..7888- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |