mRNA_Ecto-sp13_S_contig66327.17494.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66327.17494.1
Unique NamemRNA_Ecto-sp13_S_contig66327.17494.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.410e-71
Identity = 106/154 (68.83%), Postives = 125/154 (81.17%), Query Frame = 1
Query:    1 GPSRSSCLNALVVALNETCNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPELLCRTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIEFCLSSLFNEPVCLVEWPASLQ 462
            G + + CL++L+VALNETC+G +WYTSTKELQ ASLEFC+ACRNY  +HL VD QIPR LLA ADAP PHP+ LC TRVPRLRAR VTW+MR AAEL  PIFA+TDVDCL+FG  F GS+E V WPRRLK IEF  +S FN+P+ L++WP SLQ
Sbjct:    8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQ 161          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 9.750e-69
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 1
Query:    1 GPSRSSCLNALVVALNETCNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPELLCRTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRR 384
            GPSRSSCLNALV+ALNETCNGE+WYTSTKELQLASLEFC+ACRNYQTLHL VDAQIPRRLLARADAP PHPELLCRTRVPRLRARRVTW MRKAAELSIPIFA+TDVDCLKFGE  + ++ +  W  R
Sbjct:  107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGETSLEALRL--WHGR 232          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.210e-63
Identity = 100/154 (64.94%), Postives = 124/154 (80.52%), Query Frame = 1
Query:    1 GPSRSSCLNALVVALNETCNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPELLCRTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIEFCLSSLFNEPVCLVEWPASLQ 462
            GP+R  CL AL+VALNETC+G++WYTSTKELQLASL+FC+ACRN QT+HL VD QIPRRLLA ADAP PHP+ LC TRVPRLR+RRVTW+M  AA+L  PIFA+TD++ L+FG+ F  S+E V WP  L+T+EF   S F++ + LV+WP  LQ
Sbjct:   45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQ 198          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 2.470e-62
Identity = 103/154 (66.88%), Postives = 120/154 (77.92%), Query Frame = 1
Query:    1 GPSRSSCLNALVVALNETCNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPELLCRTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIEFCLSSLFNEPVCLVEWPASLQ 462
            GP+RSSCL  L VALNETC+G++WYTSTKELQLASLE CMACR+YQTLHL VDA  PRRLLA ADAP PHP+ LC TRVPRLRARR TW++  A+ +   IFA  DVD L+FG+ F GS++ + WPRRLKTIEF  SS  N  +  V WPASL+
Sbjct:  130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLR 283          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.520e-59
Identity = 99/163 (60.74%), Postives = 122/163 (74.85%), Query Frame = 1
Query:    1 GPSRSSCLNALVVALNETCNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPELLCRTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIE---------FCLSSLFNEPVCLVEWPASLQ 462
            GP+R SCLNA++VALNET +G++WYTSTKE QLASLEFC+ACRN+QTL L VD++ PRRLLA ADAP PHP+ LC TRVPRLRARRVTWD+  AA L   I+++ D D L+F   F  S+E VAWPRRLKT+E         F   SLF++P+  V WP +L+
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLE 168          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 4.050e-59
Identity = 102/154 (66.23%), Postives = 119/154 (77.27%), Query Frame = 1
Query:    1 GPSRSSCLNALVVALNETCNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPELLCRTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIEFCLSSLFNEPVCLVEWPASLQ 462
            GP+ ++CLNA+ VAL ET +G++WYTSTKELQLASLEFCMACR YQTLHL VD +IPR LLA AD P  HP+ L R RVPRLRAR VTW+M  AAEL  PIFAL D+D L FG  F GS+E V WPRRL++I F   S FN P+ LV+WPASL+
Sbjct:   30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLK 183          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 3.990e-51
Identity = 94/160 (58.75%), Postives = 113/160 (70.62%), Query Frame = 1
Query:    1 GPSRSSCLNALVVALNETCNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPEL-LCRTRVPRLRARRVTWDMRKAAELSIP----IFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIEFCLSSLFNEPVCLVEWPASLQT 465
            GP RSSCLNA+VVAL+ETC+G++WYTSTKELQLASL FC ACRN+QT+HL VD  IPRRLLA ADAP P  E  +  TR P       + D+  A    I     +FA+TDVD L+FG DF G++E VAWPR LKTI+    S F +P+ L+EWP SLQT
Sbjct:  130 GPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAP---THSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQT 286          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 5.740e-51
Identity = 89/135 (65.93%), Postives = 100/135 (74.07%), Query Frame = 1
Query:   55 CNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPELLCRTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIEFCLSSLFNEPVCLVEWPASL 459
            C+G+ WYTSTKELQ ASLEFC+ACR YQTL L VD Q PR LLA  DAP PH +  CRTRVPRLRARRV W+M  A EL  PIFAL DV  L FG  F GS+E VAWP+RLK I+F   SLFN+P+  VE+P SL
Sbjct:    2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSL 136          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.420e-48
Identity = 90/144 (62.50%), Postives = 102/144 (70.83%), Query Frame = 1
Query:   31 LVVALNETCNGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAPLPHPELLCRTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIEFCLSSLFNEPVCLVEWPASLQ 462
            L++ALNE C+G+ WYTSTKELQLASLEFC+ACR YQ L L VDAQ PR LLA  DAP PH +  CRTRVPRLRARRV W+M  A EL   +FAL DV+CL+FG  F GS+E V WP  LK I F  SS FN+        ASLQ
Sbjct:   21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIF-FSSEFNQXXXXXXXXASLQ 163          
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.100e-27
Identity = 67/136 (49.26%), Postives = 81/136 (59.56%), Query Frame = 1
Query:   13 SSCLNALVVALNETC-NGENWYTSTKELQLASLEFCMACRNYQTLHL*VDAQIPRRLLARADAP----LPHPELLC-RTRVPRLRARRVTWDMRKAAELSIPIFALTDVDCLKFGEDFVGSIEVVAWPRRLKTIEF 402
            S CL A  VAL +TC + E+WY ST +LQLASL FC+ACR+  TL L VD  IPRRLLA          P     C R+RVPR  AR VTW  +   ELS  I+AL +VD       F  +I  VAWPR+L+ +EF
Sbjct:   28 SRCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGRSRVPRFHAREVTWHRQSCVELSASIYALAEVDFFILDGGFNRAIGAVAWPRKLRRLEF 163          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66327.17494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH81_ECTSI2.410e-7168.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI9.750e-6985.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRF9_9PHAE1.210e-6364.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE2.470e-6266.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE1.520e-5960.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE4.050e-5966.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI3.990e-5158.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYF0_9PHAE5.740e-5165.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE3.420e-4862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H1_9PHAE5.100e-2749.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66327contigEcto-sp13_S_contig66327:136..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size466
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463913.568885-UTR-Ecto-sp13_S_contig66327:135..1521681463913.568885-UTR-Ecto-sp13_S_contig66327:135..152Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66327 136..152 +
1681463913.5941405-UTR-Ecto-sp13_S_contig66327:497..6011681463913.5941405-UTR-Ecto-sp13_S_contig66327:497..601Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66327 498..601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463913.5834188-CDS-Ecto-sp13_S_contig66327:152..4971681463913.5834188-CDS-Ecto-sp13_S_contig66327:152..497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66327 153..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66327.17494.1prot_Ecto-sp13_S_contig66327.17494.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66327 153..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66327.17494.1

>prot_Ecto-sp13_S_contig66327.17494.1 ID=prot_Ecto-sp13_S_contig66327.17494.1|Name=mRNA_Ecto-sp13_S_contig66327.17494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MLERPRRRFERDVQRGELVYVDQGAAAGVLGVLHGVQKLPDPPLVSRCTN
PTQAACKGRCPTSAPRAVMPDARATATSPPRDVGHAESSGIEHPNICTNR
RGLPEVWRGLRWKH*
back to top

mRNA from alignment at Ecto-sp13_S_contig66327:136..601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66327.17494.1 ID=mRNA_Ecto-sp13_S_contig66327.17494.1|Name=mRNA_Ecto-sp13_S_contig66327.17494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66327:136..601+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCCAGTCGTAGCTCATGCTTGAACGCCCTCGTCGTCGCTTTGAACGA GACGTGCAACGGGGAGAACTGGTATACGTCGACCAAGGAGCTGCAGCTGG CGTCCTTGGAGTTCTGCATGGCGTGCAGAAACTACCAGACCCTCCACTTG TAAGTCGATGCACAAATCCCACGCAGGCTGCTTGCAAGGGCAGATGCCCC ACTTCCGCACCCCGAGCTGTTATGCCGGACGCGCGTGCCACGGCTACGAG CCCGCCGCGTGACGTGGGACATGCGGAAAGCAGCGGAATTGAGCATCCCA ATATTTGCACTAACAGACGTGGACTGCCTGAAGTTTGGCGAGGACTTCGT TGGAAGCATTGAGGTTGTGGCATGGCCGCGACGGCTGAAAACGATCGAAT TTTGTCTTTCTTCACTTTTCAACGAGCCGGTATGCCTGGTCGAGTGGCCA GCATCTCTGCAGACGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66327:136..601+

>mRNA_Ecto-sp13_S_contig66327.17494.1 ID=mRNA_Ecto-sp13_S_contig66327.17494.1|Name=mRNA_Ecto-sp13_S_contig66327.17494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66327:136..601+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGAACGCCCTCGTCGTCGCTTTGAACGAGACGTGCAACGGGGAGA
ACTGGTATACGTCGACCAAGGAGCTGCAGCTGGCGTCCTTGGAGTTCTGC
ATGGCGTGCAGAAACTACCAGACCCTCCACTTGTAAGTCGATGCACAAAT
CCCACGCAGGCTGCTTGCAAGGGCAGATGCCCCACTTCCGCACCCCGAGC
TGTTATGCCGGACGCGCGTGCCACGGCTACGAGCCCGCCGCGTGACGTGG
GACATGCGGAAAGCAGCGGAATTGAGCATCCCAATATTTGCACTAACAGA
CGTGGACTGCCTGAAGTTTGGCGAGGACTTCGTTGGAAGCATTGA
back to top