mRNA_Ecto-sp13_S_contig66252.17484.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66252.17484.1
Unique NamemRNA_Ecto-sp13_S_contig66252.17484.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66252.17484.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.130e-18
Identity = 70/90 (77.78%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 RERLLRHVRATGSPRSGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGLQRERDAISAQENGGEEGCGGEVAAGGDGGEDIDFFGVA 270
            RERLLRHVRAT SPRSGSDXXXXXXXXXXXXXXXXX            TEGLQRERD I AQE+GGEEGC GEVAAGGDGGEDI+  GVA
Sbjct: 2044 RERLLRHVRATASPRSGSDXXXXXXXXXXXXXXXXXDSESKTVRRLPTTEGLQRERDIILAQEDGGEEGCDGEVAAGGDGGEDIEIVGVA 2133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66252.17484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI1.130e-1877.78Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66252contigEcto-sp13_S_contig66252:217..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score90.5
Seed ortholog evalue4.3e-16
Seed eggNOG ortholog2880.D8LGJ5
Model size271
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size270
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463912.5543232-CDS-Ecto-sp13_S_contig66252:216..4861681463912.5543232-CDS-Ecto-sp13_S_contig66252:216..486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66252 217..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66252.17484.1prot_Ecto-sp13_S_contig66252.17484.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66252 217..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66252.17484.1

>prot_Ecto-sp13_S_contig66252.17484.1 ID=prot_Ecto-sp13_S_contig66252.17484.1|Name=mRNA_Ecto-sp13_S_contig66252.17484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
RERLLRHVRATGSPRSGSDDDSSCCSSGGGSGTDNNDSESNTVRRQTTTE
GLQRERDAISAQENGGEEGCGGEVAAGGDGGEDIDFFGVA
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mRNA from alignment at Ecto-sp13_S_contig66252:217..486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66252.17484.1 ID=mRNA_Ecto-sp13_S_contig66252.17484.1|Name=mRNA_Ecto-sp13_S_contig66252.17484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66252:217..486+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAACGGCTGTTGCGCCACGTGAGGGCCACGGGTTCGCCCCGTTCTGG
AAGCGACGACGACTCCAGCTGTTGCAGCAGTGGCGGAGGTAGTGGCACCG
ACAACAATGACAGCGAAAGCAACACCGTCCGTCGACAAACAACAACCGAG
GGTCTACAACGCGAGCGAGATGCCATCTCGGCGCAGGAAAACGGCGGCGA
GGAAGGGTGCGGCGGTGAGGTAGCCGCTGGTGGGGATGGGGGCGAAGATA
TCGATTTTTTTGGTGTCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66252:217..486+

>mRNA_Ecto-sp13_S_contig66252.17484.1 ID=mRNA_Ecto-sp13_S_contig66252.17484.1|Name=mRNA_Ecto-sp13_S_contig66252.17484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66252:217..486+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAACGGCTGTTGCGCCACGTGAGGGCCACGGGTTCGCCCCGTTCTGG
AAGCGACGACGACTCCAGCTGTTGCAGCAGTGGCGGAGGTAGTGGCACCG
ACAACAATGACAGCGAAAGCAACACCGTCCGTCGACAAACAACAACCGAG
GGTCTACAACGCGAGCGAGATGCCATCTCGGCGCAGGAAAACGGCGGCGA
GGAAGGGTGCGGCGGTGAGGTAGCCGCTGGTGGGGATGGGGGCGAAGATA
TCGATTTTTTTGGTGTCGCG
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