mRNA_Ecto-sp13_S_contig662.17478.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: A0A6H5KEB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB2_9PHAE) HSP 1 Score: 385 bits (990), Expect = 1.500e-132 Identity = 199/210 (94.76%), Postives = 204/210 (97.14%), Query Frame = 2
Query: 50 MLFGNVVVVVSALLATSTTFVASFVPSRSSTQLSRELSAWRRRSPSGTRRYSLTGRRWEITCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 679
ML GNVVVVVSALLATSTTFV+S V SRS+TQLSRE SAWRRRSPSGTRRYS TGR+ E+TCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDF+FSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE
Sbjct: 1 MLGGNVVVVVSALLATSTTFVSSLVHSRSTTQLSRESSAWRRRSPSGTRRYSETGRKRELTCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFVFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 210
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: D7FIP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP1_ECTSI) HSP 1 Score: 262 bits (669), Expect = 3.750e-84 Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 2
Query: 290 TNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 679
+ QAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE
Sbjct: 60 SKQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 189
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: W7TG35_9STRA (Ribosomal rna large subunit methyltransferase h n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG35_9STRA) HSP 1 Score: 191 bits (485), Expect = 4.400e-56 Identity = 97/168 (57.74%), Postives = 121/168 (72.02%), Query Frame = 2
Query: 176 RSPSGTRRYSLTGRRWEITCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 679
RSP+ T + +T CGLQ+T+ IRGK+S E++ N AY EY KRLRPVL L T WHKTD +LEAA+ K+ V+CLDEGG+Q++S +D L+ +LEEGG+RL+ V+GGAEGLPP L+ SLS +TFTH WAR LLAEQIYRASEI+RGS YHKE
Sbjct: 55 RSPTFTHAFRVTP-----ACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKE----LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: A0A835ZC53_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC53_9STRA) HSP 1 Score: 173 bits (439), Expect = 9.360e-50 Identity = 86/156 (55.13%), Postives = 113/156 (72.44%), Query Frame = 2
Query: 209 TGRRWEITCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 676
T R TCG ++T+ IRGK+ E + +DEY KRLRP L L T WHKTD D+EAAV ++ V+C+DE G+Q++S +FS++L+ KLE GGSRL FV+GGAEGLP +K + + K+SLS M TH WA ALL+EQIYRA+EIR+G+KYHK
Sbjct: 20 TAYRLTPTCGPRVTIHIRGKE--ERGFLADGHDEYVKRLRPTLQLTTVWHKTDSDMEAAVFREQCPVICMDERGKQLDSTSFSEYLYKKLEIGGSRLAFVIGGAEGLPASMKAEKSYD--KMSLSKMVLTHTWAWALLSEQIYRATEIRKGTKYHK 171
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: A0A7S2UUR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR8_9STRA) HSP 1 Score: 172 bits (436), Expect = 4.750e-49 Identity = 90/166 (54.22%), Postives = 114/166 (68.67%), Query Frame = 2
Query: 179 SPSGTRRYSLTGRRWEITCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 676
S S R S +R +TCGL++T+ IRGKKS ED+ + DEY KRLR L L T+W+K D L V+K+ GV+V LDE G+ +NS FS ++ LE+GGSRL FV+GGAEGLPP LK + H +SLS MTFTH AR +LAEQIYRA+EIR+G+ YHK
Sbjct: 29 SSSPERIISRAPKRGFMTCGLEVTIHIRGKKSGGEDWISTGIDEYQKRLRSTLKLQTKWYKDDSALIQGVKKEKGVIVTLDERGKLLNSKEFSQMMYKMLEDGGSRLHFVIGGAEGLPPSLKTEAKH---LISLSKMTFTHQQARLILAEQIYRATEIRKGTGYHK 191
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: A0A7S2R9V3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9V3_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.170e-38 Identity = 77/133 (57.89%), Postives = 91/133 (68.42%), Query Frame = 2
Query: 281 EDYTNQAYDEYAKRLRPV-LALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 676
+ + Y EY KRL+P + L T WH+TD L AAV V+CLD G Q +S FSD LFSKLE+GGSRL FV+GGAEGLPP LK+ G +SLS +TFTH AR LLAEQ+YRA+EIRRGS YHK
Sbjct: 5 DQWIEDGYAEYEKRLKPQQVELVTVWHRTDQQLLAAVEGSKAPVICLDPTGAQWSSERFSDMLFSKLEDGGSRLMFVIGGAEGLPPELKRS----GNLMSLSKLTFTHQMARMLLAEQVYRAAEIRRGSGYHK 133
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: A0A7S2F628_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F628_9STRA) HSP 1 Score: 134 bits (337), Expect = 3.160e-34 Identity = 75/157 (47.77%), Postives = 107/157 (68.15%), Query Frame = 2
Query: 227 ITCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPV-LALDTQWHKTDDDLEAAVR---KDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQK--PPHGGAK-LSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 676
IT LQ+T+ I+G+K D+ A+++YA RL P + L T WHK++D L A++ ++P +CLD G+Q++S F L+ +L EGGSRL FV+GGAEGLP +++K P + +SLSSMTFTH AR +LAEQ+YRA+EIR+G+ YHK
Sbjct: 50 ITAALQVTLHIQGRKI--NDHNEVAFEQYAMRLTPHRIQLKTVWHKSNDQLTKAIKATSREP--CICLDVCGQQLDSGGFEQLLYQRLVEGGSRLAFVIGGAEGLPDEVREKKDPKLQHVEFISLSSMTFTHQMARVILAEQVYRAAEIRKGTGYHK 202
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: UPI001BC8D685 (23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BC8D685) HSP 1 Score: 129 bits (325), Expect = 3.060e-33 Identity = 75/146 (51.37%), Postives = 96/146 (65.75%), Query Frame = 2
Query: 239 LQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 676
L+I + GK +E + N A +EY KRL+ + ++ W K D L A V ++P +VVCLD G+ ++S FS FL KLEEGGSRLTFV+GGAEGLP LKQ +SLS +TFTH AR +L EQIYRA EI +GS+YHK
Sbjct: 2 LKIKILSVGKT--KETWLNTAIEEYQKRLQGQVEMEWVWAKDDPQLMALVSREP-LVVCLDPQGKMLSSEQFSSFLMRKLEEGGSRLTFVIGGAEGLPLFLKQNKE----AISLSLLTFTHQIARVVLIEQIYRALEIAKGSRYHK 140
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: A0A7W1YWG3_9BACT (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1YWG3_9BACT) HSP 1 Score: 128 bits (322), Expect = 8.210e-33 Identity = 70/144 (48.61%), Postives = 89/144 (61.81%), Query Frame = 2
Query: 245 ITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 676
I ++I +E++ A +EY KRL P+ L QW K D L K+P +++CLD G ++S FS FL KL+ GGSRLTF++GGA+GLP LK P LSLS MTFTH R +L EQIYRA EI RGS+YHK
Sbjct: 2 IKIKIISVGKNKEEWLETALNEYVKRLTPIATLSFQWAKDDQHLLDIALKEP-LLICLDPQGSSLSSEEFSSFLHQKLQLGGSRLTFIIGGADGLPTTLKSSP-----LLSLSKMTFTHQITRLILVEQIYRAFEIARGSQYHK 139
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Match: A0A7S2XIV0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIV0_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.660e-32 Identity = 73/160 (45.62%), Postives = 100/160 (62.50%), Query Frame = 2
Query: 218 RWEITCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPV-LALDTQWHKTDDDLEAAVRKDPG---VVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQ---KPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 676
R + G+++ +RI G+K+ E + AY Y RLRP + ++T WHK D +L V+ D VV LD G+ S FS+ +++ L++GGSRL+FV+GGAEGLP L+ P SLS++TFTH +AR LL EQIYRASEIR+GS YHK
Sbjct: 52 RSSLCMGMEVRIRIVGRKNGSEKWLEDAYSMYETRLRPSNIDVETIWHKNDQELIKGVKGDSDKGHTVVLLDPRGKPRTSEQFSENMYTWLDQGGSRLSFVIGGAEGLPYELRDGSYNPKKSLILFSLSALTFTHQFARTLLMEQIYRASEIRKGSGYHK 211 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig662.17478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig662.17478.1 >prot_Ecto-sp13_S_contig662.17478.1 ID=prot_Ecto-sp13_S_contig662.17478.1|Name=mRNA_Ecto-sp13_S_contig662.17478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp MLFGNVVVVVSALLATSTTFVASFVPSRSSTQLSRELSAWRRRSPSGTRRback to top mRNA from alignment at Ecto-sp13_S_contig662:20085..21970+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig662.17478.1 ID=mRNA_Ecto-sp13_S_contig662.17478.1|Name=mRNA_Ecto-sp13_S_contig662.17478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:20085..21970+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig662:20085..21970+ >mRNA_Ecto-sp13_S_contig662.17478.1 ID=mRNA_Ecto-sp13_S_contig662.17478.1|Name=mRNA_Ecto-sp13_S_contig662.17478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:20085..21970+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |