prot_Ecto-sp13_S_contig6611.17463.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6611.17463.1
Unique Nameprot_Ecto-sp13_S_contig6611.17463.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length172
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6611.17463.1 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 9.270e-58
Identity = 140/172 (81.40%), Postives = 141/172 (81.98%), Query Frame = 0 
Query:    1 MDQSSVAAAGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKSXXXXXXXXTNSDKAVDGKENSSVNSTGSRDLASRKVFSERGNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSIVSEVERRAAALREAIDAHRRDNEARRAMSDATRQQTAQLAATLSALPEHLP 172
            MDQSSVAAAGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKS    XXXX  SDKAVDGKENSSVNST SRDLA RKV SE GN+  XXXXXXXXX                   SSIVSEVERRAAALREAIDAHRRDNEARRAMSDATRQQTAQLAATLSALPEHLP
Sbjct:    1 MDQSSVAAAGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKSSTSTXXXXX-SDKAVDGKENSSVNSTASRDLAGRKVLSESGNS--XXXXXXXXXGAGHTNHGDLEALRDLRNLSSIVSEVERRAAALREAIDAHRRDNEARRAMSDATRQQTAQLAATLSALPEHLP 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6611.17463.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVT8_9PHAE9.270e-5881.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6611contigEcto-sp13_S_contig6611:6653..7168 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6611.17463.1mRNA_Ecto-sp13_S_contig6611.17463.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6611 6396..7168 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6611.17463.1 ID=prot_Ecto-sp13_S_contig6611.17463.1|Name=mRNA_Ecto-sp13_S_contig6611.17463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MDQSSVAAAGAALVASVGNMTTSATNKLQDVSRKVALARLLDDKSSSSSS
SSSTNSDKAVDGKENSSVNSTGSRDLASRKVFSERGNNNNDNNNSNTARG
AGHTNHGDLEALRDLRDLSSIVSEVERRAAALREAIDAHRRDNEARRAMS
DATRQQTAQLAATLSALPEHLP
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