mRNA_Ecto-sp13_S_contig6609.17456.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: D7FJJ9_ECTSI (Ribosomal RNA-processing protein 43 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ9_ECTSI) HSP 1 Score: 518 bits (1333), Expect = 6.480e-182 Identity = 265/274 (96.72%), Postives = 270/274 (98.54%), Query Frame = 1
Query: 4 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVRIQS 825
MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQA VLSTFV+NSIVESGALVLTDLAIDDG+FAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPT LVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVT VST+EGKVCGVHKPGGSCASG+QLNECLQLCQQHAKQ+TQTL AAVRIQS
Sbjct: 1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTQLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTVVSTSEGKVCGVHKPGGSCASGKQLNECLQLCQQHAKQLTQTLAAAVRIQS 274
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A836C8N5_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N5_9STRA) HSP 1 Score: 257 bits (656), Expect = 3.740e-79 Identity = 143/281 (50.89%), Postives = 182/281 (64.77%), Query Frame = 1
Query: 4 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDD-EIFVTEDTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAV-STAEGK----------VCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAA 810
MEVEAFQ+LDP+ FYR+F+ GVRPDGR L+ VR ++V GVL+ V ASALV LG TKV+ GI+LQVG PS+ P CG ++V V LTPL SS FS GRPSEQAQ L +R+ + S DL I+ FAW+LC+D+ CLS++GN ADA L++ L+RL+LP T D E+ V E TPL V VP+PLT GVF+G ++ADPSLLEE+L+ +T V S EGK VC VHK GG+C + L L L + HA++V L A
Sbjct: 1 MEVEAFQKLDPQTFYRKFLSEGVRPDGRGLQEVRDVAVSCGVLTAPHVAASALVTLGDTKVVTGITLQVGQPSQAEPGCGDVEVSVHLTPLCSSMFSVGRPSEQAQALEALIRDVLTASRPFRREDLLIEARRFAWRLCIDMYCLSYEGNAADAALLSVAACLLRLRLPPTVITPDGEVLVAEGEGTPLPVSHVPLPLTFGVFEGALVADPSLLEEDLVAAALTVVQSLDEGKGGSGGGGAARVCAVHKAGGACVAPALLARALALGRSHAQRVLPVLRGA 281
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI00074FE3AF (exosome complex component RRP43 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FE3AF) HSP 1 Score: 186 bits (472), Expect = 4.600e-52 Identity = 109/274 (39.78%), Postives = 155/274 (56.57%), Query Frame = 1
Query: 4 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
M F+ ++P +YRRF+K RPDGREL R +V+VG ++ SALV LG+ V+ GI + P ++ G + V L PL SS+F G P E+AQ S F+ + I S + DL I DG AW L DI+CL +DGNL DA + A + AL +QLP R I++E + E T L VR+ PV + +FD ++I DP+ EE+L T VT V+ EGK+C VHKPGGS G +L +C+ + K+V + L+ ++
Sbjct: 1 MAAGGFRTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSITT--ADGSALVKLGNMTVICGIKAEFAAPPVDSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFMADLIENSQVVRKEDLCIVDGKLAWVLYCDIICLDYDGNLLDACVCALLAALKNVQLPAVR-INEETGLAEVNLKEKTALTVRKEPVAASFVLFDSLVIVDPTAEEEDLATGTVTIVTDEEGKLCSVHKPGGSALMGAKLQDCIGRAKTRHKEVKKLLDTLIK 271
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A803TXF1_ANOCA (Ribosomal RNA-processing protein 43 n=2 Tax=Iguania TaxID=8511 RepID=A0A803TXF1_ANOCA) HSP 1 Score: 184 bits (466), Expect = 3.620e-51 Identity = 103/272 (37.87%), Postives = 155/272 (56.99%), Query Frame = 1
Query: 10 VEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
F+ ++P +YRRF+K RPDGR+L R ++++G ++ SALV LG+T V+ GI + P ++ G + V L PL SS+F G P E+AQ S FV + I S ++ DL I DG AW L DI+CL +DGNL DA + A + AL +QLP I++E + E PL +R+ PV + +FD ++I DP+ EE+L T +T V+ EGK+C VHKPGGS +G +L +C+ K+V + ++ ++
Sbjct: 4 ASGFRTVEPVEYYRRFLKENCRPDGRDLGEFRTTTINIGSITT--ADGSALVKLGNTTVVCGIKAEFAAPLADSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFVADVIENSQVVMKEDLCIVDGKIAWVLYCDIICLDYDGNLLDACMCAFLAALRNVQLPAVT-INEETGLAEVNLKEKIPLTIRKEPVATSFILFDTVMIVDPTAEEEDLATGMLTIVTDEEGKLCSVHKPGGSALTGAKLQDCISRATARYKEVKKLIDKVIK 272
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI00115C7504 (LOW QUALITY PROTEIN: exosome complex component RRP43 n=2 Tax=Pipridae TaxID=114313 RepID=UPI00115C7504) HSP 1 Score: 183 bits (464), Expect = 6.920e-51 Identity = 103/271 (38.01%), Postives = 161/271 (59.41%), Query Frame = 1
Query: 16 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
AF+ ++P +Y+RF+K +PDGREL R +V++G ++ SALV LGST V+ G+ ++ P+ ++ G + V+L L S +F SG P E+AQ S F+ + I S +V DL I +G AW L DI CL +DGNL DA++ A + AL +QLP I++E ++E TPL++R+ PV + VFD ++I DP+ +E+L T VT V+ EG++C VHKPGGS +G +L +C+ K+V + ++ ++
Sbjct: 4 AFKTVEPLEYYKRFLKENCQPDGRELGEFRATTVNIGSITT--ADGSALVKLGSTTVICGVKSELAAPAADSANKGYIVPNVELPSLCSERFRSGPPGEEAQAASQFIADMIENSQMIVKEDLCIANGKLAWVLYCDIXCLDYDGNLLDASVFALLAALKNVQLPSVI-INEETGLSEVNLKQKTPLIIRKHPVATSFAVFDNTVLIVDPTAKKEDLATGTVTTVTDEEGRLCSVHKPGGSLLTGAKLQDCITRAITRHKEVKKLIDKVIK 271
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI0009E32917 (exosome complex component RRP43-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E32917) HSP 1 Score: 182 bits (462), Expect = 1.320e-50 Identity = 110/261 (42.15%), Postives = 153/261 (58.62%), Query Frame = 1
Query: 19 FQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFV---TEDTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQV 789
F+ P +YR+F+K VRPDGR L R ++VG +S + SALV LG+T V+ G+ + PS+ P G + V L PL SS+F G PSEQAQVLS FV + I + L +L I +G +W L +D++CLS+DGN+ DA L+A+M AL QL + ID+E +E+ PL +++ PV T GVFD ++ ADP+ EE LLT VT V T + K+ VHKPGGS +L EC + + K+V
Sbjct: 5 FKTAQPLEYYRQFLKEDVRPDGRALLEFRKTILNVGSIST--AEGSALVKLGNTTVVCGVKAEFAVPSQENPKHGFIVPNVDLPPLCSSRFRPGPPSEQAQVLSQFVADVISNCEPINLEELCIVEGKLSWVLYVDMMCLSYDGNITDACLVASMAALQNTQLYSVK-IDEETQTPVPSEEREVPLNLKKHPVSATFGVFDDTVLFADPTDEEENLLTGVVTVVVTDDDKIAAVHKPGGSPLPDDKLQECFKKAVRRGKEV 262
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI000522B703 (exosome complex component RRP43 n=1 Tax=Opisthocomus hoazin TaxID=30419 RepID=UPI000522B703) HSP 1 Score: 182 bits (463), Expect = 2.520e-50 Identity = 103/273 (37.73%), Postives = 160/273 (58.61%), Query Frame = 1
Query: 10 VEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
VE + ++P +YRRF+K RPDGREL R +V++G ++ SALV LG+T V+ G+ ++ P+ ++ G + V+L L S++F SG P E+AQ S F+ + I S + DL I DG AW L DI+CL +DGN+ DA+ A + AL +QLP I++E ++E PL++R+ PV + +FD ++I DP+ EE+L T VT V+ EGK+C VHKPGGS +G +L +C+ K+V + ++ ++
Sbjct: 36 VEGKRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITT--ADGSALVKLGNTTVICGVKAELAAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLIIRKHPVATSFAIFDDTLLIVDPTAEEEDLATGTVTVVTDEEGKLCSVHKPGGSPLTGAKLQDCITRAITRHKEVKKLIDKVIK 305
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A8C4XQU8_FALTI (Ribosomal RNA-processing protein 43 n=2 Tax=Falco TaxID=8952 RepID=A0A8C4XQU8_FALTI) HSP 1 Score: 181 bits (459), Expect = 3.760e-50 Identity = 102/271 (37.64%), Postives = 160/271 (59.04%), Query Frame = 1
Query: 16 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
AF+ ++P +YRRF+K RPDGREL R +V++G ++ SALV LG+T V+ G+ ++ P+ ++ G + V+L L S+KF SG P E+AQ S F+ + I S + DL I +G AW L DI+CL +DGN+ DA+ A + AL +QLP I++E ++E PLV+R+ PV + +FD ++I DP+ EE+L + VT V+ EG++C VHKPGGS +G +L +C+ K+V + ++ ++
Sbjct: 4 AFKMVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITT--ADGSALVKLGNTTVVCGVKAELAAPAVDSANKGYIVPNVELPSLCSTKFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIANGKLAWVLYCDIICLDYDGNILDASAFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLVIRKHPVATSFAIFDDTLLIVDPTAEEEDLASGTVTVVTDEEGRLCSVHKPGGSPLTGDKLQDCITRAITRHKEVKKLIDKVIK 271
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A7L0ZDC2_9PASS (Ribosomal RNA-processing protein 43 (Fragment) n=9 Tax=Neognathae TaxID=8825 RepID=A0A7L0ZDC2_9PASS) HSP 1 Score: 181 bits (459), Expect = 4.090e-50 Identity = 104/272 (38.24%), Postives = 158/272 (58.09%), Query Frame = 1
Query: 16 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVL-SEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
F+ ++P +YRRF+K RPDGREL R +V++G S SALV LG+T V+ G+ ++ P+ ++ G + V+L L S +F SG P E+AQ S F+ + I S +V DL I +G AW L DI+CL +DGNL DA++ A + AL +QLP I +E ++E TPL +R+ PV + +FD ++I DP+ EE+L T VT V+ EG++C VHKPGGS +G +L +C+ K+V + ++ ++
Sbjct: 4 CFRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGNTGSITTADGSALVKLGNTTVICGVKAELAAPAADSSNKGYIVPNVELPSLCSERFRSGPPGEEAQAASQFIADVIENSQMIVKEDLCIANGKLAWVLYCDIICLDYDGNLLDASVFALLAALKNVQLPSVI-ISEETGLSEVNLKQKTPLTIRKHPVATSLAIFDDTLLIVDPTAEEEDLATGTVTIVTDEEGRLCSVHKPGGSPLTGAKLQDCINRAITRHKEVKKLIDKVIK 274
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A7K4YTZ7_BUCAB (Ribosomal RNA-processing protein 43 (Fragment) n=53 Tax=Neognathae TaxID=8825 RepID=A0A7K4YTZ7_BUCAB) HSP 1 Score: 181 bits (458), Expect = 5.580e-50 Identity = 101/271 (37.27%), Postives = 157/271 (57.93%), Query Frame = 1
Query: 16 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
F+ ++P +YRRF+K RPDGREL R +V++G S SALV LG+T V+ G+ ++ P+ ++ G + V+L L S++F SG P E+AQ S F+ + I S + DL I +G AW L DI+CL +DGN+ DA+ A + AL +QLP I++E ++E PL +R+ PV + +FD ++I DP+ EE+L T VT V+ EG++C VHKPGGS +G +L +C+ K+V + ++ ++
Sbjct: 4 CFRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGKCSITTADGSALVKLGNTTVICGVKAELAAPAVDSADKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIANGKLAWVLYCDIICLDYDGNILDASAFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLTIRKHPVATSFAIFDDTLLIVDPTAEEEDLATGTVTIVTDDEGRLCSVHKPGGSPLTGAKLQDCITRAITRHKEVKKLIDKVIK 273 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6609.17456.1 >prot_Ecto-sp13_S_contig6609.17456.1 ID=prot_Ecto-sp13_S_contig6609.17456.1|Name=mRNA_Ecto-sp13_S_contig6609.17456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQAback to top mRNA from alignment at Ecto-sp13_S_contig6609:1..2186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6609.17456.1 ID=mRNA_Ecto-sp13_S_contig6609.17456.1|Name=mRNA_Ecto-sp13_S_contig6609.17456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6609:1..2186+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6609:1..2186+ >mRNA_Ecto-sp13_S_contig6609.17456.1 ID=mRNA_Ecto-sp13_S_contig6609.17456.1|Name=mRNA_Ecto-sp13_S_contig6609.17456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6609:1..2186+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |