mRNA_Ecto-sp13_S_contig6609.17456.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6609.17456.1
Unique NamemRNA_Ecto-sp13_S_contig6609.17456.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: D7FJJ9_ECTSI (Ribosomal RNA-processing protein 43 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ9_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 6.480e-182
Identity = 265/274 (96.72%), Postives = 270/274 (98.54%), Query Frame = 1
Query:    4 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVRIQS 825
            MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQA VLSTFV+NSIVESGALVLTDLAIDDG+FAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPT LVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVT VST+EGKVCGVHKPGGSCASG+QLNECLQLCQQHAKQ+TQTL AAVRIQS
Sbjct:    1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTQLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTVVSTSEGKVCGVHKPGGSCASGKQLNECLQLCQQHAKQLTQTLAAAVRIQS 274          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A836C8N5_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N5_9STRA)

HSP 1 Score: 257 bits (656), Expect = 3.740e-79
Identity = 143/281 (50.89%), Postives = 182/281 (64.77%), Query Frame = 1
Query:    4 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDD-EIFVTEDTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAV-STAEGK----------VCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAA 810
            MEVEAFQ+LDP+ FYR+F+  GVRPDGR L+ VR ++V  GVL+   V ASALV LG TKV+ GI+LQVG PS+  P CG ++V V LTPL SS FS GRPSEQAQ L   +R+ +  S      DL I+   FAW+LC+D+ CLS++GN ADA L++    L+RL+LP T    D E+ V E   TPL V  VP+PLT GVF+G ++ADPSLLEE+L+   +T V S  EGK          VC VHK GG+C +   L   L L + HA++V   L  A
Sbjct:    1 MEVEAFQKLDPQTFYRKFLSEGVRPDGRGLQEVRDVAVSCGVLTAPHVAASALVTLGDTKVVTGITLQVGQPSQAEPGCGDVEVSVHLTPLCSSMFSVGRPSEQAQALEALIRDVLTASRPFRREDLLIEARRFAWRLCIDMYCLSYEGNAADAALLSVAACLLRLRLPPTVITPDGEVLVAEGEGTPLPVSHVPLPLTFGVFEGALVADPSLLEEDLVAAALTVVQSLDEGKGGSGGGGAARVCAVHKAGGACVAPALLARALALGRSHAQRVLPVLRGA 281          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI00074FE3AF (exosome complex component RRP43 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FE3AF)

HSP 1 Score: 186 bits (472), Expect = 4.600e-52
Identity = 109/274 (39.78%), Postives = 155/274 (56.57%), Query Frame = 1
Query:    4 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
            M    F+ ++P  +YRRF+K   RPDGREL   R  +V+VG ++      SALV LG+  V+ GI  +   P  ++   G +   V L PL SS+F  G P E+AQ  S F+ + I  S  +   DL I DG  AW L  DI+CL +DGNL DA + A + AL  +QLP  R I++E  + E      T L VR+ PV  +  +FD ++I DP+  EE+L T  VT V+  EGK+C VHKPGGS   G +L +C+   +   K+V + L+  ++
Sbjct:    1 MAAGGFRTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSITT--ADGSALVKLGNMTVICGIKAEFAAPPVDSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFMADLIENSQVVRKEDLCIVDGKLAWVLYCDIICLDYDGNLLDACVCALLAALKNVQLPAVR-INEETGLAEVNLKEKTALTVRKEPVAASFVLFDSLVIVDPTAEEEDLATGTVTIVTDEEGKLCSVHKPGGSALMGAKLQDCIGRAKTRHKEVKKLLDTLIK 271          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A803TXF1_ANOCA (Ribosomal RNA-processing protein 43 n=2 Tax=Iguania TaxID=8511 RepID=A0A803TXF1_ANOCA)

HSP 1 Score: 184 bits (466), Expect = 3.620e-51
Identity = 103/272 (37.87%), Postives = 155/272 (56.99%), Query Frame = 1
Query:   10 VEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
               F+ ++P  +YRRF+K   RPDGR+L   R  ++++G ++      SALV LG+T V+ GI  +   P  ++   G +   V L PL SS+F  G P E+AQ  S FV + I  S  ++  DL I DG  AW L  DI+CL +DGNL DA + A + AL  +QLP    I++E  + E       PL +R+ PV  +  +FD ++I DP+  EE+L T  +T V+  EGK+C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 ASGFRTVEPVEYYRRFLKENCRPDGRDLGEFRTTTINIGSITT--ADGSALVKLGNTTVVCGIKAEFAAPLADSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFVADVIENSQVVMKEDLCIVDGKIAWVLYCDIICLDYDGNLLDACMCAFLAALRNVQLPAVT-INEETGLAEVNLKEKIPLTIRKEPVATSFILFDTVMIVDPTAEEEDLATGMLTIVTDEEGKLCSVHKPGGSALTGAKLQDCISRATARYKEVKKLIDKVIK 272          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI00115C7504 (LOW QUALITY PROTEIN: exosome complex component RRP43 n=2 Tax=Pipridae TaxID=114313 RepID=UPI00115C7504)

HSP 1 Score: 183 bits (464), Expect = 6.920e-51
Identity = 103/271 (38.01%), Postives = 161/271 (59.41%), Query Frame = 1
Query:   16 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
            AF+ ++P  +Y+RF+K   +PDGREL   R  +V++G ++      SALV LGST V+ G+  ++  P+ ++   G +   V+L  L S +F SG P E+AQ  S F+ + I  S  +V  DL I +G  AW L  DI CL +DGNL DA++ A + AL  +QLP    I++E  ++E      TPL++R+ PV  +  VFD  ++I DP+  +E+L T  VT V+  EG++C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 AFKTVEPLEYYKRFLKENCQPDGRELGEFRATTVNIGSITT--ADGSALVKLGSTTVICGVKSELAAPAADSANKGYIVPNVELPSLCSERFRSGPPGEEAQAASQFIADMIENSQMIVKEDLCIANGKLAWVLYCDIXCLDYDGNLLDASVFALLAALKNVQLPSVI-INEETGLSEVNLKQKTPLIIRKHPVATSFAVFDNTVLIVDPTAKKEDLATGTVTTVTDEEGRLCSVHKPGGSLLTGAKLQDCITRAITRHKEVKKLIDKVIK 271          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI0009E32917 (exosome complex component RRP43-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E32917)

HSP 1 Score: 182 bits (462), Expect = 1.320e-50
Identity = 110/261 (42.15%), Postives = 153/261 (58.62%), Query Frame = 1
Query:   19 FQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFV---TEDTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQV 789
            F+   P  +YR+F+K  VRPDGR L   R   ++VG +S    + SALV LG+T V+ G+  +   PS+  P  G +   V L PL SS+F  G PSEQAQVLS FV + I     + L +L I +G  +W L +D++CLS+DGN+ DA L+A+M AL   QL   + ID+E      +E+   PL +++ PV  T GVFD  ++ ADP+  EE LLT  VT V T + K+  VHKPGGS     +L EC +   +  K+V
Sbjct:    5 FKTAQPLEYYRQFLKEDVRPDGRALLEFRKTILNVGSIST--AEGSALVKLGNTTVVCGVKAEFAVPSQENPKHGFIVPNVDLPPLCSSRFRPGPPSEQAQVLSQFVADVISNCEPINLEELCIVEGKLSWVLYVDMMCLSYDGNITDACLVASMAALQNTQLYSVK-IDEETQTPVPSEEREVPLNLKKHPVSATFGVFDDTVLFADPTDEEENLLTGVVTVVVTDDDKIAAVHKPGGSPLPDDKLQECFKKAVRRGKEV 262          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: UPI000522B703 (exosome complex component RRP43 n=1 Tax=Opisthocomus hoazin TaxID=30419 RepID=UPI000522B703)

HSP 1 Score: 182 bits (463), Expect = 2.520e-50
Identity = 103/273 (37.73%), Postives = 160/273 (58.61%), Query Frame = 1
Query:   10 VEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
            VE  + ++P  +YRRF+K   RPDGREL   R  +V++G ++      SALV LG+T V+ G+  ++  P+ ++   G +   V+L  L S++F SG P E+AQ  S F+ + I  S  +   DL I DG  AW L  DI+CL +DGN+ DA+  A + AL  +QLP    I++E  ++E       PL++R+ PV  +  +FD  ++I DP+  EE+L T  VT V+  EGK+C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:   36 VEGKRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITT--ADGSALVKLGNTTVICGVKAELAAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLIIRKHPVATSFAIFDDTLLIVDPTAEEEDLATGTVTVVTDEEGKLCSVHKPGGSPLTGAKLQDCITRAITRHKEVKKLIDKVIK 305          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A8C4XQU8_FALTI (Ribosomal RNA-processing protein 43 n=2 Tax=Falco TaxID=8952 RepID=A0A8C4XQU8_FALTI)

HSP 1 Score: 181 bits (459), Expect = 3.760e-50
Identity = 102/271 (37.64%), Postives = 160/271 (59.04%), Query Frame = 1
Query:   16 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
            AF+ ++P  +YRRF+K   RPDGREL   R  +V++G ++      SALV LG+T V+ G+  ++  P+ ++   G +   V+L  L S+KF SG P E+AQ  S F+ + I  S  +   DL I +G  AW L  DI+CL +DGN+ DA+  A + AL  +QLP    I++E  ++E       PLV+R+ PV  +  +FD  ++I DP+  EE+L +  VT V+  EG++C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 AFKMVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITT--ADGSALVKLGNTTVVCGVKAELAAPAVDSANKGYIVPNVELPSLCSTKFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIANGKLAWVLYCDIICLDYDGNILDASAFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLVIRKHPVATSFAIFDDTLLIVDPTAEEEDLASGTVTVVTDEEGRLCSVHKPGGSPLTGDKLQDCITRAITRHKEVKKLIDKVIK 271          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A7L0ZDC2_9PASS (Ribosomal RNA-processing protein 43 (Fragment) n=9 Tax=Neognathae TaxID=8825 RepID=A0A7L0ZDC2_9PASS)

HSP 1 Score: 181 bits (459), Expect = 4.090e-50
Identity = 104/272 (38.24%), Postives = 158/272 (58.09%), Query Frame = 1
Query:   16 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVL-SEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
             F+ ++P  +YRRF+K   RPDGREL   R  +V++G   S      SALV LG+T V+ G+  ++  P+ ++   G +   V+L  L S +F SG P E+AQ  S F+ + I  S  +V  DL I +G  AW L  DI+CL +DGNL DA++ A + AL  +QLP    I +E  ++E      TPL +R+ PV  +  +FD  ++I DP+  EE+L T  VT V+  EG++C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 CFRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGNTGSITTADGSALVKLGNTTVICGVKAELAAPAADSSNKGYIVPNVELPSLCSERFRSGPPGEEAQAASQFIADVIENSQMIVKEDLCIANGKLAWVLYCDIICLDYDGNLLDASVFALLAALKNVQLPSVI-ISEETGLSEVNLKQKTPLTIRKHPVATSLAIFDDTLLIVDPTAEEEDLATGTVTIVTDEEGRLCSVHKPGGSPLTGAKLQDCINRAITRHKEVKKLIDKVIK 274          
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Match: A0A7K4YTZ7_BUCAB (Ribosomal RNA-processing protein 43 (Fragment) n=53 Tax=Neognathae TaxID=8825 RepID=A0A7K4YTZ7_BUCAB)

HSP 1 Score: 181 bits (458), Expect = 5.580e-50
Identity = 101/271 (37.27%), Postives = 157/271 (57.93%), Query Frame = 1
Query:   16 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTE---DTPTPLVVREVPVPLTCGVFDG-IIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNECLQLCQQHAKQVTQTLEAAVR 816
             F+ ++P  +YRRF+K   RPDGREL   R  +V++G  S      SALV LG+T V+ G+  ++  P+ ++   G +   V+L  L S++F SG P E+AQ  S F+ + I  S  +   DL I +G  AW L  DI+CL +DGN+ DA+  A + AL  +QLP    I++E  ++E       PL +R+ PV  +  +FD  ++I DP+  EE+L T  VT V+  EG++C VHKPGGS  +G +L +C+       K+V + ++  ++
Sbjct:    4 CFRTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGKCSITTADGSALVKLGNTTVICGVKAELAAPAVDSADKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCIANGKLAWVLYCDIICLDYDGNILDASAFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLTIRKHPVATSFAIFDDTLLIVDPTAEEEDLATGTVTIVTDDEGRLCSVHKPGGSPLTGAKLQDCITRAITRHKEVKKLIDKVIK 273          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6609.17456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJJ9_ECTSI6.480e-18296.72Ribosomal RNA-processing protein 43 n=2 Tax=Ectoca... [more]
A0A836C8N5_9STRA3.740e-7950.89Ribosomal RNA-processing protein 43 n=1 Tax=Tribon... [more]
UPI00074FE3AF4.600e-5239.78exosome complex component RRP43 n=1 Tax=Gekko japo... [more]
A0A803TXF1_ANOCA3.620e-5137.87Ribosomal RNA-processing protein 43 n=2 Tax=Iguani... [more]
UPI00115C75046.920e-5138.01LOW QUALITY PROTEIN: exosome complex component RRP... [more]
UPI0009E329171.320e-5042.15exosome complex component RRP43-like n=1 Tax=Orbic... [more]
UPI000522B7032.520e-5037.73exosome complex component RRP43 n=1 Tax=Opisthocom... [more]
A0A8C4XQU8_FALTI3.760e-5037.64Ribosomal RNA-processing protein 43 n=2 Tax=Falco ... [more]
A0A7L0ZDC2_9PASS4.090e-5038.24Ribosomal RNA-processing protein 43 (Fragment) n=9... [more]
A0A7K4YTZ7_BUCAB5.580e-5037.27Ribosomal RNA-processing protein 43 (Fragment) n=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6609contigEcto-sp13_S_contig6609:1..2186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score517.7
Seed ortholog evalue3.3e-144
Seed eggNOG ortholog2880.D7FJJ9
Model size1397
KEGG koko:K12586
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1613@2759
Ec32 ortholog descriptionRrp43 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-04_006390.1
Cds size825
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6609.17456.1prot_Ecto-sp13_S_contig6609.17456.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6609 4..1617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463910.409382-UTR-Ecto-sp13_S_contig6609:0..31681463910.409382-UTR-Ecto-sp13_S_contig6609:0..3Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6609 1..3 +
1681463910.493376-UTR-Ecto-sp13_S_contig6609:1617..21861681463910.493376-UTR-Ecto-sp13_S_contig6609:1617..2186Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6609 1618..2186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463910.4421086-CDS-Ecto-sp13_S_contig6609:3..2501681463910.4421086-CDS-Ecto-sp13_S_contig6609:3..250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6609 4..250 +
1681463910.4520702-CDS-Ecto-sp13_S_contig6609:393..4991681463910.4520702-CDS-Ecto-sp13_S_contig6609:393..499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6609 394..499 +
1681463910.4620016-CDS-Ecto-sp13_S_contig6609:759..9531681463910.4620016-CDS-Ecto-sp13_S_contig6609:759..953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6609 760..953 +
1681463910.4724073-CDS-Ecto-sp13_S_contig6609:1159..13051681463910.4724073-CDS-Ecto-sp13_S_contig6609:1159..1305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6609 1160..1305 +
1681463910.482759-CDS-Ecto-sp13_S_contig6609:1485..16171681463910.482759-CDS-Ecto-sp13_S_contig6609:1485..1617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6609 1486..1617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6609.17456.1

>prot_Ecto-sp13_S_contig6609.17456.1 ID=prot_Ecto-sp13_S_contig6609.17456.1|Name=mRNA_Ecto-sp13_S_contig6609.17456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQA
SALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGR
PSEQAQVLSTFVRNSIVESGALVLTDLAIDDGSFAWKLCMDIVCLSFDGN
LADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTPLVVREVPVPLTCG
VFDGIIIADPSLLEEELLTTHVTAVSTAEGKVCGVHKPGGSCASGQQLNE
CLQLCQQHAKQVTQTLEAAVRIQS*
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mRNA from alignment at Ecto-sp13_S_contig6609:1..2186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6609.17456.1 ID=mRNA_Ecto-sp13_S_contig6609.17456.1|Name=mRNA_Ecto-sp13_S_contig6609.17456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6609:1..2186+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACATGGAAGTTGAAGCTTTCCAGAGACTCGACCCAGAAAATTTCTACAG AAGATTTGTGAAGAATGGGGTCAGGCCAGACGGAAGGGAGCTCCGTGCAG TGAGACCGATTTCTGTGGATGTTGGGGTGCTCTCGGAGGAACGGGTGCAG GCGTCCGCCTTGGTCGGCCTTGGATCCACCAAAGTGCTCGCTGGGATATC GCTGCAAGTCGGTCACCCCAGCGAGAACACACCGATGTGTGGAATGCTTG GTGAGCGGCTGTCTGATGTAGGTACAATTGCTTCGCACTCTGCTATTGGC GGGGGCTCTACAGCAGTACATCGTTGTAGATATGTATTTGTAAATAATCT ATGATCCCATCATCGATCCCCATCTCGTTGATGTTTTGCCCAGATGTGGA GGTCAAGCTGACCCCCTTGTCTTCGTCCAAGTTCAGTTCAGGGCGGCCAT CGGAGCAGGCGCAAGTATTGTCGACTTTTGTGAGGAACTCCATCGTCGAG TGAGTTGCGTACGTATGCTCCGTTACGCAGCGAATAGAGCATCCATGCGA ATAGTTTTTTACAACAGCGTACGCGGTACGGATACCACAGCGCCCGTGAC CACGCCGAGATCTTCCCAGCACACATCCACAGCAGTGTATCCATGTATCC ATCCCCACTTGGCGCCAGCAGGGGGCAGGGCTTGGCCTGTAGACATCATG TTTATCCAACGAATACATACGTTAACATTCTGAATGTCTCATCATGAATC CATCACCAGGTCGGGAGCGCTTGTGTTGACAGATCTCGCCATCGACGACG GCTCGTTTGCATGGAAGCTGTGCATGGACATCGTCTGCTTGAGTTTTGAC GGGAATCTGGCAGACGCTACGCTGATTGCAGCTATGGGAGCTCTCATGCG CCTGCAACTCCCGGGAACCCGCCGCATCGACGATGAGATTTTCGTCACGG AGGGTGAGGGAACGATGCAGTACTTTTCTGGAGATGATCATGCTTCCGTT GTGTCCGTGAAGCTTCAGCTTTGTGGGCGAGCGAGGTTCACACTCTCGAC CCCGAGCTCACAGTAGTTTGGCGTGGGCATGTTTTCGGCTTCGCTCACCA CCTGAACGCCTTGTGGATGAGTTTTGTGTTTTGTGTCTCCCTCCGCCTCT ATGCTTCAGACACACCAACCCCCTTGGTGGTGCGGGAAGTTCCAGTGCCG TTGACATGCGGTGTGTTCGACGGGATTATCATTGCGGATCCCTCCTTGCT GGAGGAGGAACTTTTGACAACGCACGTGACTGCGGTATCAACTGCGGAGG GGAAGGTGCGGCTTGAATATCTTGTCTTGCGACGTGGCAAATAGCCATAG TACAGCAGCTGAAAGTTTTACCGCCCTCTCTCGCGAATGGTACGGAATAT GCATAGAAAGGCTCAAATTGTTCACAGAACTGCACTTCTTGGCATTGATA TTTGCCATGGGGCCATTTCTGTTGTTGGTTGACAGGTGTGCGGGGTTCAC AAACCTGGAGGTAGCTGTGCATCAGGGCAACAGCTCAATGAATGTCTCCA GCTCTGCCAGCAACATGCGAAGCAAGTGACACAGACCCTTGAGGCTGCCG TTCGGATACAGTCGTGATCAGTCGCTTCACGCCTGGCCAGAGAACGGGTT CGAAGGTGGTGGCACTGGCGTGGTTGTTATGGCCGACGTTTTCTTGATGC GGAATTGGTTGATGTTTCGGTGTTTTTTTCGAATGCAGCAACGACTCATG TTGATTTGCCGGTAGCAGGAAGTTGTATAGTGGGAACCTGCCGAGCGCGG AAGGCAACTCTGTAAAATCGTCTATCTCTCACCACGAATCGCTTGTCTTA CGATGAAATGCGTGTGTCCATGCACGTAGAGTGTCAGCATGCATTCGATG CTGGAAGTTGTTAGTCGATGAGATCTCATTGGAACTTGAAGAAACGATGT GTTCTGTATGTCACACTTCGCCCAAAGCAGAACGAGTCATGGGGTATACA CAAGTTTCCAAGTTTGAGATCGAACTCAACCCAGCCAACCGGGAGCGCCA CAGCAATCGGAGCTGTTATTCTCGATCTTTGAGTGGTTACAGTGCGAACT GCATGAATAGTGTGCTTTCGCTAAGAGTGGCCACGAACGCGGAATGGAGC GGACAATACGGAAGGGTTTACGGTTTCCCGGCCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6609:1..2186+

>mRNA_Ecto-sp13_S_contig6609.17456.1 ID=mRNA_Ecto-sp13_S_contig6609.17456.1|Name=mRNA_Ecto-sp13_S_contig6609.17456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6609:1..2186+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGTTGAAGCTTTCCAGAGACTCGACCCAGAAAATTTCTACAGAAG
ATTTGTGAAGAATGGGGTCAGGCCAGACGGAAGGGAGCTCCGTGCAGTGA
GACCGATTTCTGTGGATGTTGGGGTGCTCTCGGAGGAACGGGTGCAGGCG
TCCGCCTTGGTCGGCCTTGGATCCACCAAAGTGCTCGCTGGGATATCGCT
GCAAGTCGGTCACCCCAGCGAGAACACACCGATGTGTGGAATGCTTGATG
TGGAGGTCAAGCTGACCCCCTTGTCTTCGTCCAAGTTCAGTTCAGGGCGG
CCATCGGAGCAGGCGCAAGTATTGTCGACTTTTGTGAGGAACTCCATCGT
CGAGTCGGGAGCGCTTGTGTTGACAGATCTCGCCATCGACGACGGCTCGT
TTGCATGGAAGCTGTGCATGGACATCGTCTGCTTGAGTTTTGACGGGAAT
CTGGCAGACGCTACGCTGATTGCAGCTATGGGAGCTCTCATGCGCCTGCA
ACTCCCGGGAACCCGCCGCATCGACGATGAGATTTTCGTCACGGAGGACA
CACCAACCCCCTTGGTGGTGCGGGAAGTTCCAGTGCCGTTGACATGCGGT
GTGTTCGACGGGATTATCATTGCGGATCCCTCCTTGCTGGAGGAGGAACT
TTTGACAACGCACGTGACTGCGGTATCAACTGCGGAGGGGAAGGTGTGCG
GGGTTCACAAACCTGGAGGTAGCTGTGCATCAGGGCAACAGCTCAATGAA
TGTCTCCAGCTCTGCCAGCAACATGCGAAGCAAGTGACACAGACCCTTGA
GGCTGCCGTTCGGATACAGTCGTGA
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