mRNA_Ecto-sp13_S_contig66067.17452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66067.17452.1
Unique NamemRNA_Ecto-sp13_S_contig66067.17452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66067.17452.1 vs. uniprot
Match: D8LS24_ECTSI (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS24_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.210e-35
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 DGGGEDDSGIEQRQAEALAAARSQARCELESVFSALYPPDLPEEDGMKTSRNERLSKGCQSIALTYGEVSTSGVS 225
            D GGEDDSGIEQRQAEALAAARSQAR ELESVFSALYPPDLPEEDGMKTSRNERLSKG QSIALTYGEVS +G S
Sbjct:   36 DSGGEDDSGIEQRQAEALAAARSQARSELESVFSALYPPDLPEEDGMKTSRNERLSKGYQSIALTYGEVSATGFS 110
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BLAST of mRNA_Ecto-sp13_S_contig66067.17452.1 vs. uniprot
Match: A0A6H5JVM2_9PHAE (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM2_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.300e-5
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  139 MKTSRNERLSKGCQSIALTYGEVSTSGVS 225
            MKTSRNERLSKG QSIALTYGEVS +G S
Sbjct:    1 MKTSRNERLSKGYQSIALTYGEVSATGFS 29
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66067.17452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS24_ECTSI2.210e-3592.00Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A6H5JVM2_9PHAE1.300e-586.21Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66067contigEcto-sp13_S_contig66067:250..474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score131.3
Seed ortholog evalue1.8e-28
Seed eggNOG ortholog2880.D8LS24
Model size225
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2BR00@1,2S1VE@2759
Cds size225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463910.1072066-CDS-Ecto-sp13_S_contig66067:249..4741681463910.1072066-CDS-Ecto-sp13_S_contig66067:249..474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66067 250..474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66067.17452.1prot_Ecto-sp13_S_contig66067.17452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66067 250..474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66067.17452.1

>prot_Ecto-sp13_S_contig66067.17452.1 ID=prot_Ecto-sp13_S_contig66067.17452.1|Name=mRNA_Ecto-sp13_S_contig66067.17452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
DGGGEDDSGIEQRQAEALAAARSQARCELESVFSALYPPDLPEEDGMKTS
RNERLSKGCQSIALTYGEVSTSGVS
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mRNA from alignment at Ecto-sp13_S_contig66067:250..474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66067.17452.1 ID=mRNA_Ecto-sp13_S_contig66067.17452.1|Name=mRNA_Ecto-sp13_S_contig66067.17452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66067:250..474- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGGTGGAGAAGACGACAGCGGCATTGAACAGCGGCAAGCCGAAGC
GCTGGCGGCAGCTAGAAGTCAGGCTCGGTGTGAGCTCGAGTCCGTGTTCT
CAGCGCTGTACCCGCCGGATCTGCCCGAGGAGGACGGCATGAAGACGTCT
CGGAACGAAAGGTTGTCGAAGGGGTGCCAAAGCATCGCTCTCACCTACGG
TGAGGTGTCTACATCAGGGGTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66067:250..474-

>mRNA_Ecto-sp13_S_contig66067.17452.1 ID=mRNA_Ecto-sp13_S_contig66067.17452.1|Name=mRNA_Ecto-sp13_S_contig66067.17452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66067:250..474- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGGTGGAGAAGACGACAGCGGCATTGAACAGCGGCAAGCCGAAGC
GCTGGCGGCAGCTAGAAGTCAGGCTCGGTGTGAGCTCGAGTCCGTGTTCT
CAGCGCTGTACCCGCCGGATCTGCCCGAGGAGGACGGCATGAAGACGTCT
CGGAACGAAAGGTTGTCGAAGGGGTGCCAAAGCATCGCTCTCACCTACGG
TGAGGTGTCTACATCAGGGGTGAGC
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