mRNA_Ecto-sp13_S_contig66.17446.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66.17446.1
Unique NamemRNA_Ecto-sp13_S_contig66.17446.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 703 bits (1814), Expect = 1.350e-243
Identity = 381/583 (65.35%), Postives = 432/583 (74.10%), Query Frame = 3
Query:  108 MLRFQSNEQKTFSEILEAAARETNDILSQRRKVMDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVF--EGKGNGATSALGNLCEAEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDSIVGGFSSVPWTPP--GGSTGY--TASPGAFLFMLKGEGKGIGSASIQPMKWGVKGGPAGNDAVFRGPAYGPIFGKGYDLTVLWKVAENTLRTRNHTYEVPAGSLFLSLDARAVVDVETFRVCCKPTDTLASTKPRHHSVGDAAVPPAPVTATDDVLTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANGQEEDVVELSVRGTRVTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDYGRRVIDCKPSVFSKVMDILRMAKRASWGRGNDDQEANETPRVTIKACDRVEFEEFVDFYFKGCESFIMEYVESLGDK 1838
            MLR QSNE+KTFS  L  ++R     LSQRR  MD  W  IDEGWQ L+E M +VGITKPL+ KEG+VKLNVGG LLAFRRSV   EGK    T ALGNL EAEWDKR+PRDSDG IVLDESPTCVK L H LLT  S +K TVGR  DFAR+E P LL YTA VLGLSG LAP+GM I GGTTIFEPHE S++TAVVQ WCPGHPG LELLYRASRDGWN A F A C  DSPST+T  RVKG  TGGTDSI+GGFSSVPW+P     S GY    SPGAF+F+LK EGKG  S++  PMKWGVK G A   AV +G   GP FG+  DL V W    +T+ T N TY+VPAGS FL L+ R ++D+E FRVC KPT TL   K  H +      P APV  +DDV TFG LIA SLM+ EMVLQ+A  ELALA ARTTAC  A+ AVYGPDVA+GQ+EDVVELSVRGT +TT+RSTLR+CPDSA A RFDE +WPAA+ DLD  GRR+IDC+P+VFSKV+D+LR+AKRA+W  G + Q   ET RVTIK  DRV FEEFVD YFKGCESFIM +V   GD+
Sbjct:    1 MLRCQSNEKKTFSATLAVSSRAMEAALSQRRLEMDHEWDSIDEGWQTLRERMTEVGITKPLESKEGIVKLNVGGLLLAFRRSVLDSEGKQQPPTWALGNLFEAEWDKRVPRDSDGHIVLDESPTCVKQLVHRLLTASSSSKATVGRAGDFARNEDPALLHYTAGVLGLSGCLAPVGMSIQGGTTIFEPHETSKLTAVVQDWCPGHPGGLELLYRASRDGWNGATFNARCKGDSPSTVTLLRVKGCETGGTDSIIGGFSSVPWSPAIQNYSYGYYLRGSPGAFVFILKDEGKG--SSTFPPMKWGVKNGLAAK-AVNQG--CGPCFGE-CDLKVNWNGNMSTVGTDNSTYDVPAGSHFLQLNGRHLLDIEAFRVCSKPTHTLPLAKQEHRAGEGTNTPTAPVRTSDDVPTFGQLIADSLMEAEMVLQDAGIELALAKARTTACATALAAVYGPDVASGQQEDVVELSVRGTAMTTLRSTLRVCPDSALAARFDEGKWPAAKKDLDSDGRRMIDCRPAVFSKVLDVLRIAKRAAWAGGENLQGMKET-RVTIKPGDRVAFEEFVDMYFKGCESFIMAHVCLPGDE 576          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 582 bits (1499), Expect = 6.320e-197
Identity = 319/571 (55.87%), Postives = 377/571 (66.02%), Query Frame = 3
Query:  153 LEAAARETNDILSQRRKVMDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGN--GATSALGNLCEAEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDS-PSTITFFRVKGQGTGGTDSIVGGFSSVPWTP---PGGSTGYTASPGAFLFMLKGEGKGIGSASIQPMKWGVKGGPAGNDAVFRGPAYGPIFGKGYDLTVLWKVAENTLRTRNHTYEVPAGSLFLSLDARAVVDVETFRVCCKPTDTLASTKPRHHSVGDAAVPPAPVTATDDVLTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANGQEEDVVELSVRGTRVTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDYGRRVIDCKPSVFSKVMDILRMAKRASWGRGNDDQEANET----PRVTIKACDRVEFEEFVDFYFKGCESFIMEYVESLGD 1835
            +EA+AR T   LSQRR+ MDQAW D D+GWQ LQ HM                                EGKG    +T ALG+L EAEWDKR+PRD+DGRIVLDESP CVKHL   LL  P+ A GT   E D +RD+ PDL  +TARVLGLSG LAP+GM I GGTT F+PHEAS++TAVVQ WCPG+PG               AA Q  CGD S P+TITF RVKG+G   TD I+GGFSS+PW        +  Y+ SPGAFLFMLK +G+G  S   Q  KWGVK G +   AV+RG  YGP FG+G DL V+W   E+ +RT N TY  P GS F  L+   +VDVETFRV  KP    +STK   H+V D   P APV   DDV +FG L+A SLM+EE +LQEA NEL+LA ART AC  A+ AVYGP+VA G E+DVVEL+VRGTR+TT+RSTLRICPDSA A  F+E+QWP AE DLD  GRR+IDCKPSVFSKV+D+LR+AKRA+W R  +    NE     PRVTIKA D   FEEFVD YF  CE+F+ME+V+ L D
Sbjct:    1 MEASARATEAALSQRRREMDQAWDDTDQGWQELQAHMT-------------------------------EGKGEQPSSTWALGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALLLRPNAANGTATGEADMSRDDQPDLFHHTARVLGLSGQLAPVGMTIKGGTTTFDPHEASKLTAVVQRWCPGNPG---------------AACQDRCGDQSSPTTITFLRVKGRGAAATDCIIGGFSSIPWDDFMYDSDAGYYSPSPGAFLFMLK-DGEGRHSGVYQSTKWGVKDGRSAY-AVYRGQGYGPCFGEGRDLHVVWNGTESAVRTGNQTYHAPTGSPFPELNGCRLVDVETFRVGPKPNTPTSSTKQEDHAVEDKTGPGAPVKTADDVRSFGDLVADSLMEEEKLLQEAANELSLAKARTMACATAVAAVYGPEVATGTEDDVVELNVRGTRMTTLRSTLRICPDSALAAWFNEEQWPVAEKDLDSNGRRIIDCKPSVFSKVLDVLRIAKRAAWARSEEGPVRNEKRRVKPRVTIKAGDCAAFEEFVDMYFPCCETFMMEHVDLLDD 523          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: D7FIY4_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY4_ECTSI)

HSP 1 Score: 563 bits (1451), Expect = 3.630e-192
Identity = 278/300 (92.67%), Postives = 285/300 (95.00%), Query Frame = 3
Query:   78 RCRESENGHKMLRFQSNEQKTFSEILEAAARETNDILSQRRKVMDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGNGATSALGNLCEAEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDSIVGGFSSVPWTPPGGSTGYTASPGAFLFMLKGEGKGIGSA 977
            R RESENGH MLRFQSNEQKTFSEILEA+ARETNDILSQRRKVMDQAW DIDEGWQALQEHMAK+GITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKG GATSALG+LCEAEWDKRIPRDSDGRIVLDESPTCVK LFHDLLT PSLAKGTV RED+FA DETPDLLRYTA VLGLS HLAPIGM ITGGTTIFEPHEASR+TAV+QGWCPGHPGRLELLYRASRDGWNSAAFQATCGDD PST+TFFRVKGQGTGGTDSIVGGFSSVPWTPPGGSTGYTASPGAFLFMLK  GK IGSA
Sbjct:   55 RYRESENGHNMLRFQSNEQKTFSEILEASARETNDILSQRRKVMDQAWADIDEGWQALQEHMAKIGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGKGATSALGSLCEAEWDKRIPRDSDGRIVLDESPTCVKRLFHDLLTPPSLAKGTVVREDNFASDETPDLLRYTAHVLGLSWHLAPIGMSITGGTTIFEPHEASRLTAVIQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDRPSTVTFFRVKGQGTGGTDSIVGGFSSVPWTPPGGSTGYTASPGAFLFMLKDAGKRIGSA 354          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: A0A6H5JD55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD55_9PHAE)

HSP 1 Score: 530 bits (1365), Expect = 1.190e-177
Identity = 303/540 (56.11%), Postives = 354/540 (65.56%), Query Frame = 3
Query:  258 HMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGN--GATSALGNLCEAEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTIT--FFRVKGQGTGGTDSIVGGFSSVPWTPPGGSTGYTASPGAFLFMLKGEGKGIGSASIQPMKWGVKGGPAGNDAVFRGPAYGPIFGKGYDLTVLWKV-AENTLRTRNHTYEVPAGSLFLSLDARAVVDVETFRVC-CKPTDTLASTKPRHHSVGDAAVPPAPVTATDDVLTF--GHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANG-QEEDVVELSVRGTRVTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDYGRRVIDCKPSVFSKVMDILRMAKRASWGRGNDDQEANETPRVTIKACDRVEFEEFVDFYFKGCESFIMEYVESLGDKEANR 1850
            ++ +VGITKP   KEG+V LNVGGS L F RSV EGKG   G T ALG LCEAEWDKR+PRDSDGRIVLDESPTC +                   E D A D+ P+LL YTARVLGL G  AP  MP+ GG  I EPHE  R+TA+VQGWCPGHPG LELLYRASRDGW++ +F   C D SPSTI+  F   + +    T S +  FS+ P                        G G+                                    DL V+WKV A +T++T+N T +V A S  L+L+ R VVD+ETFR+C C+PTD L+S KP+HH +GD AVP APV +    ++F  G LIA +LM EE+VLQEA NELA+A ARTTAC  A+V VYGPDVA G +EEDVVELSV GTRVT M STLR+CP S FAT+F ED+WPA + DLDD GRRVIDC+PSVFSKVMDILR    ASW RG+DDQEAN+TPRVTIK CDR EFEEFVD YFKGCES IMEYVESLGD+EA+R
Sbjct:    4 YLTEVGITKPSRSKEGMVMLNVGGSRLTFHRSVLEGKGEQQGLTWALGTLCEAEWDKRVPRDSDGRIVLDESPTCPR-------------VWGAREEHDLAPDDKPELLYYTARVLGLRGQSAPFDMPMRGGPNILEPHETKRLTAIVQGWCPGHPGGLELLYRASRDGWSARSFDDKCRDGSPSTISLPFSGFESRADLFTISTIVLFSAAP------------------------GNGM-----------------------------------CDLRVVWKVGAASTVQTKNLTQDVQAESRLLALNGRGVVDIETFRLCYCRPTDALSSAKPKHHFIGDIAVPTAPVRSRLLRMSFPFGRLIADALM-EEIVLQEANNELAVAEARTTACATALVVVYGPDVAKGREEEDVVELSVCGTRVTRMCSTLRVCPGSTFATQFLEDRWPATKKDLDDNGRRVIDCEPSVFSKVMDILR----ASWARGDDDQEANKTPRVTIKPCDRAEFEEFVDIYFKGCESLIMEYVESLGDEEADR 466          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 464 bits (1195), Expect = 7.010e-151
Identity = 261/561 (46.52%), Postives = 346/561 (61.68%), Query Frame = 3
Query:  183 ILSQRRKVMDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEG-KGNGATSALGNLCEAEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDSIVGGFSSVPWTPPG-GSTGYTASPGAFLFMLKGEGKGIGSASIQPMKWGVKGGPAGNDAVFRGPAYGPIFGKGYDLTVLWK-VAENTLRTRNHTYEVPAGSLFLSLDARAVVDVETFRVCCKPTDTLASTK--------PRHHSVGDAAVPPAPVTATDDVLTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANGQEEDVVELSVRGTRVTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDYGRRVIDCKPSVFSKVMDILRMAKRASWGRGNDDQEANETPRVTIKACDRVEFEEFVDFYFKGCESFIMEYVESLG 1832
            +LSQRRK M QAW D+D GW  L +     GITKP   ++G+++LNVGGS L FRR +  G K   AT ALGNL E+ WD R+PRDSDGRIVLDESP CVKHL H L+ +   A G++ R D  A DE    L Y AR LGLS ++   GM + GGTT     E   +TA +QGWCPG+P  + LLYRASRDGW+   F A+CG++SP+TIT  RV     G + SIVGGFSSVPW+P   G     +S GAF+FMLK    G G  S QP+KWG +    G D V  G + GP FG+  DL V +      TL+ + ++Y+VP+GS F +L+ + + ++E F+V      T + +K          H +V  ++   A   A  D  TFG+ IA +LM+E + L +A  EL  A ++  A   A+ AVYGP+VA G  + VVELSVRGTR+TT+RSTL+ C +SA A  F+ED+WP  + D+D+ GRR+I+C P+VF KV+D+LRM KRA+W   +      E   V + A DR  F+ FV+ YF G E+FI + V   G
Sbjct:    4 VLSQRRKEMSQAWEDVDRGWHELNQCRIDAGITKPSGSQQGMLRLNVGGSHLNFRRCILAGRKEPSATWALGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGDTLALDEMV-YLPYVARALGLSAYIPRQGMEVVGGTTSLSHCEVGELTATLQGWCPGNPNTMRLLYRASRDGWSPYPFHASCGNNSPNTITLLRV-----GASQSIVGGFSSVPWSPHAYGGDSIMSSLGAFIFMLKDSDMG-GPNSFQPVKWGKRDNNGGCDVVV-GASRGPYFGR-TDLVVNFNNYFPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAATTSSPSKRLKIQGPEDTHGAVSTSSTNTASREANSDAETFGNAIAGALMEERIALHQAEAELEQAHSKAAASGDALAAVYGPEVARGAIDTVVELSVRGTRMTTLRSTLQACRESALAALFNEDKWPPTDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASD-----RELAHVRVDAADRPAFDSFVNMYFPGFENFITDMVVPQG 550          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 443 bits (1139), Expect = 8.700e-143
Identity = 253/583 (43.40%), Postives = 342/583 (58.66%), Query Frame = 3
Query:  108 MLRFQSNEQKTFSEILEAAARETNDILSQRRKVMDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGN-GATSALGNLCEAEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDSIVGGFSSVPWTPPG-GSTGYTASPGAFLFMLKGEGKGIGSASIQPMKWGVKGGPAGNDAVFRGPAYGPIFGKGYDLTVLWKVAENTLRTRNHTYEVPAGSLFLSLDARAVVDVETFRVCCKPTDTLASTKPRHHSVGDAAVPPAPVTATDDVLTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANGQEEDVVELSVRGTRVTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDYGRRVIDCKPSVFSKVMDILRMAKRASWGRGNDDQEANETPRVTIKACDRVEFEEFVDFYFKGCESFIMEYVESLGDKEANR 1850
            M R   NE  TFS  + A ++E    L QRRK M QAW D++ GW  L +     GITKP   +EG+++LNVGGS L FRR V +GK    AT ALGNL E+ WD R+PRDSDGRIVLD+SP CVK L H L+ +   A G++ R +  A DE    L + AR LGLS ++   GM + GGTTI    E   +TA +QGWCPG+P  ++LLYRASRD W+   F A+CG++SP+TIT  RV     G + SIVGGFSSVPW+P   G     +S GAF+FMLK    G G  S QP+KW  +    G D V  G + GP FG+  DL V +     TL+ + ++Y+VP+   F +L+ + + ++E F+V                                      + IA +LM+E + L +A  EL  A ++      A+ AVYGP+VA G  + VVELSVRGTR+TT+RSTLR C +SA A  F+ED+WPA + D+D+ GRR+I+C P+VF KV+D+LRM KRA+W   +      E+  V + A DR  F+ FV+ +F G E+FI + V   G   + +
Sbjct:    1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGKKEPSATWALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLIESSGAAPGSLPRGETLAPDEMA-YLPHVARALGLSAYIPLQGMEVVGGTTILSHCEVGELTATLQGWCPGNPNTMQLLYRASRDDWSPYPFHASCGNNSPNTITLLRV-----GASASIVGGFSSVPWSPHAYGGDSVMSSLGAFIFMLKDSDMG-GPNSFQPVKWSKRDNNGGYDVVV-GASRGPFFGR-TDLVVNFTYVPVTLQAQPYSYDVPSVPAFPNLNGQTITEIEVFQV-----------------------------------NICNAIAGALMEERIALYQAEAELEHAHSKAAVSGRALAAVYGPEVARGAIDTVVELSVRGTRMTTLRSTLRACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASD-----RESAHVRVDAADRPAFDSFVNMFFPGFENFITDMVVPQGSARSGQ 534          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 9.260e-124
Identity = 250/559 (44.72%), Postives = 318/559 (56.89%), Query Frame = 3
Query:  207 MDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFE--GKGNGATSALGNLCEA-EWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDSIVGGFSSVPWT--PPGGSTGYTASPGAFLFMLKGEGKGIG-SASIQPMKWGVKGGPAGNDAVFRGPAYGPIFGKG--YDLTVLWKVAENTLRTRNHTYEVPAGSLFLSLDARAVVDVETFRVCCKPTDTLASTKPRHHSVGDAAV--PPAPVTATD---DVLTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANGQEEDVVELSVRGTR----VTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDYGRRVI-DCKPSVFSKVMDILRMAKRASWGRGNDDQEANETPRVTIKACDRVEFEEFVDFYFKGCESFIMEYVESL 1829
            M + W  +D GW+AL+  M + G++    ++  +V+LNVGG  +   RSV    G+ + +T  LG+L E   WDKR+PR  DGRIVLDESP CV+ L  D       A        +F  DE P  +   A  LGL      +GM + GG+T     EA R+TA + GWCPG P  LELLYRASRDGW+  A  A CGDDSPSTI+ FRVK Q    +DSIVGGFSSVPWT  PP           +FLF+LK    GI  S + QP  WG++         +    +G IFG+G  +DL+V+W     TL   N  Y VP G  F+ L  RA+ DVE FRV  +   TL +T P    + D A     + ++A +   DV  FG  IA SL  E   L  A+ EL  A     A   A+ AVYGP  A G ++ +VELSVRG+R    +TT+ STL+ CP+SA A RFDE +WP  E D D +GRRV+ DC PSVFSKV+D+LRM KR +W    DD +      V IK  DR  FEEFV+ YF GCESFIM+ V+ L
Sbjct:    1 MKKEWDKLDSGWEALESKMNETGMSMVSSIQPSIVRLNVGGLDVNIARSVLRKAGESSSSTWTLGDLFEGCVWDKRLPRCEDGRIVLDESPVCVEELLCD-------ASSKRPGNSNFPDDEKP-YIGGVASALGLD-----LGMTVPGGSTTLPHDEAERLTATILGWCPGRPEGLELLYRASRDGWSGDALHARCGDDSPSTISLFRVKTQDANTSDSIVGGFSSVPWTALPP-----ENRGLDSFLFILK---DGIEESHNFQPAIWGLRIRNPKPSGAYDMEKFGLIFGRGRIFDLSVVW--TNQTLVAGNQVYAVPPGFQFIRLGGRAIADVEVFRVR-QTMGTLPTTPPTVTGLIDCAAYFEASAMSAEEHENDVYRFGTSIAGSLKDERAALHTAQRELVQANTMAAASLKALAAVYGPHTAAGVKDPIVELSVRGSRTTERMTTLLSTLQACPESALAARFDEAKWPVTEKDKDAHGRRVMKDCSPSVFSKVLDVLRMKKREAWA--GDDGKMGAAVLVAIKDADRAPFEEFVNMYFPGCESFIMDSVKFL 533          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE)

HSP 1 Score: 392 bits (1006), Expect = 3.780e-119
Identity = 245/575 (42.61%), Postives = 303/575 (52.70%), Query Frame = 3
Query:  153 LEAAARETNDILSQRRKVMDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGNGATSALGNLCEAEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDSIVGGFSSVPWTPPGGSTGYTASPGAFLFMLKGEGKGIGSASIQPMKWGVKGGPAGNDAVFRGPAYGPIFGKGYDLTVLWKVAENTLRTRNHTYEVPAGSLFLSLDARAVVDVETFRVCCKPTDTLASTKPRHHSVGDAAVPPAPVTATDDVLTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANGQEEDVVELSVRGTRVTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDYGRRVIDCKPSVFSKVMDILRMAKRASWGRGNDDQEANETPRVTIKACDRVEFEEFVDFYFKGCESFIMEYVESLGDKEANR*APGASAYG 1877
            +EA A E    L+QRR+ M Q W  IDE WQ L++ M K    +P                              +T A+GN+ EAE + R+ RDSDGRIVLDESPT VKHL   LL   SLAK T  R+ + A D+  +LL YTARVLGLSG LAP+ MPITGGT I EPHEAS++TA VQG                                                GT+S++G FS + W        Y++ P AF+F+                             V RG A+GP FG G+DL   W   + T +T N+TY+VP GS FL L+   +VD+ETFRVC KPT+T +S K                         G+L  Y         Q  R  L      TT    A+ AVY PD+A G E D +ELSVRGTR+TT+RSTLR+CPDSA ATRFDED+WPAA+ DLD  GRRVIDCKP+VFSKV+D+LRMA RASW      Q+ NE PRVT+K  DRV FEEFV   F GCES I+++V+   D+EA+  + GA A G
Sbjct:    1 MEAFALEIEATLAQRRQEMGQEWDGIDEEWQTLRKRMTK----RP------------------------------STWAMGNMFEAESENRVARDSDGRIVLDESPTWVKHLVQGLLFRSSLAKDTASRDGEVAGDDILNLLHYTARVLGLSGQLAPVLMPITGGTAILEPHEASKLTAGVQG------------------------------------------------GTNSMIGWFSGISWAA---DNCYSSCPEAFVFLAP-------------------------RVVDRGQAFGPTFGGGHDLKENWNRTKTTPKTGNYTYDVPVGSPFLQLNGCPIVDIETFRVCPKPTNTSSSAK-------------------------GNLTPYKT-------QWRRRHL------TTTYATALAAVYCPDMAMGLEVDFMELSVRGTRMTTLRSTLRVCPDSALATRFDEDKWPAAKKDLDSNGRRVIDCKPAVFSKVLDVLRMATRASWAGSEKSQQVNEKPRVTMKVGDRVAFEEFVGMNFPGCESCILDFVDLRHDEEADPRSRGADADG 427          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: A0A6H5JCR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR8_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 5.670e-94
Identity = 228/591 (38.58%), Postives = 299/591 (50.59%), Query Frame = 3
Query:  108 MLRFQSNEQKTFSEILEAAARETNDILSQRRKVMDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGNGATSA--LGNLCEAE-WDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFARDETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDSIVGGFSSVPWTPPGGSTGYTASPGAFLFMLKGEGKGIGSASIQPMKWGVKGGPAGNDAVFRGPAYGPIFGKGYDLTVLWKVAENTLRTRN-HTYEVPAGSLFLSLDARAVVDVETFRVCCKPT--------DTLASTKPRHHSVGDAAVPPAPVTATDDVLTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANGQEEDVVELSVRGTR----VTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDYGRRVI-DCKPSVFSKVMDILRMAKRASWGRGNDDQEANETPRVTIKACDRVEFEEFVDFYFKGCESFIMEYVESL 1829
            M R   NE + F    +  A+E  ++L  R K   + W  +D GW+AL+  M + G++        +V+L+VGG  +    SV   K   ++S+  LG+L +   WDKR+P   DGRIVLDESP CV+ +  D     S   G+    DD    E P  + Y A  LGL                  +P   S        W            RASRD W+  AF A CGDDSPSTI+ F V+ QG   +DS+VG FS VPWT     +    SPG+FLFMLK   +G  S ++QP KWG K G  G   V  G   GP+          W +  + + T +   Y++P    FL    R VVD+E FRV   PT        D  A  K    S  +           +DV  FG  IA SL  E   L  A+ EL  A     A   A+ AVYGP++A G E+ VVELSVRG R    +TT+ STL+ CP+SA A RFDE +WP  + + D +GRRVI DC P VF+KV+D+LRM KR +W   +DD++      V IKA DR  FE+FV+ YF  CESFIM+ V+ L
Sbjct:    1 MFRHHPNEHECFLTATKTHAQELEELLEDRAKETKKEWDKLDSGWEALEFKMNETGMSTVSSFHPSIVRLDVGGLDVNIAWSVLREKVVASSSSWTLGDLFKGGVWDKRLPSPEDGRIVLDESPVCVEEILSD--GASSKRSGSNNLPDD----EKP-YIGYVASALGLG----------------LQPGMVS--------W---------QADRASRDSWSDHAFHARCGDDSPSTISLFCVEAQGANNSDSVVGRFSVVPWTASPEFSPVLPSPGSFLFMLKDGNEG--SDAVQPSKWGPKVGYTGQ--VVDGRTEGPVD---------WVMCLHRMFTVHCGIYDIPTEHPFLYHMGREVVDIEVFRVL--PTSLTVTGLIDCAAYFKCSDMSAEEHE---------NDVYRFGMSIAGSLRDERAALHTAQRELVKANTIAAASVEALAAVYGPNIAAGVEDRVVELSVRGPRKTERMTTLLSTLQACPESALAARFDEAKWPVTDKEKDAHGRRVIKDCSPLVFAKVLDVLRMKKREAWA--DDDKKVRAAVLVAIKAADRAPFEKFVNMYFPACESFIMDSVKFL 525          
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Match: D7G141_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G141_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 5.900e-93
Identity = 236/645 (36.59%), Postives = 315/645 (48.84%), Query Frame = 3
Query:  108 MLRFQSNEQKTFSEILEAAARETNDILSQRRKVMDQAWGDIDEGWQALQEHMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGNGATSALGNLCEAEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLT---------TPSLA--KGTVGREDDFARDETPDLLRYTARVLGLSGHLAPI----GMPITGGTTIFEPHEASRMTAVVQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDSIVGGFSSVPWTPP--GGSTGYTASPGAFLFMLKGEGKGIGSASIQPMKWGVKGG--------PAGNDAVFRGPAYGPIFGKGYDLTVLWKVAEN-------TLRTRNHTYEVPAGSLFLSLDARAVVDVETFRVCCKPTDTLASTKPRHHSVGDAAVPPA--------------PVTATDDV-----LTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVANGQEED--VVELSVRGTRVTTMRSTLRICPDSAFATRFDEDQWPAA---ENDLDDYG---------RRVIDCKPSVFSKVMDILRMAKRASWGRGNDDQEA--------NETPRVTIKACDRVEFEEFVDFYFKGCESFIMEYVE 1823
            MLR    ++  F E   A  ++ N  L      MD+ W D++ GW+  Q+++  VG+ +P    EG+++LN+GG      RS+         S LG L E  WD+R+PRD DGRIVLDESP CVKH+ H LL          T SL   +   G     A  E P LL Y + VLGLS  +       GM + GGTT   P +  + +++++ WCPG P  L LLYRASRDG+++  FQ  C      TIT  RVK    G  DS+VGGFS +   P   G  TG   S  AFLF+L   G G  +A     KW +K G        P   D V  GPA+G       D+ V +  +E        TL T    Y+V   S F+ LD + V ++E FRV     D  A  +  H  V   A  P               P  + D++     L FG  +A  LM+E+M L  A+ EL  A  R  A   A+  VYGP VA+ + E+  VVELSVRG  VTT+RSTL  CPDSAF+T       P     + + +D G         RR +DC PS FSK++D++RM KRA+W    DDQ+           T R+ +   DR  F+  V   F  CE F+M+ +E
Sbjct:    1 MLRRHFKQRDAFRETASAQIKQLNAALDLAISAMDEPWRDLENGWERHQQYLVDVGV-RPTTGNEGVLRLNIGGVPANVHRSLIAEAEGFKGSVLGALFEQMWDERVPRDMDGRIVLDESPACVKHIIHTLLRGGCTTRTKETASLCHFRSAAGPSAAVAAHEEPYLL-YISHVLGLSNVIPACPNTKGMVVAGGTTTANPLQLPQWSSLLRSWCPGDPAGLHLLYRASRDGFSTGPFQQ-CVRGVCETITLIRVKSD-DGRPDSVVGGFSDIEIVPQEVGMETGNQRSSSAFLFLLDSPGGGFPTAK----KWSIKEGEDSCAIHWPETAD-VCAGPAFGLE-----DMCVTFSESEGQSGSSGCTLSTGGEFYDVDEDSPFVGLDGKEVAEIEIFRV-----DKTARVE--HQDVAPVATTPPQSNIFPDKRKHFLHPDRSADEIEAAYALQFGSSLAELLMEEQMALAYAQTELEEAKKRAAATARALAIVYGPGVASARVEENAVVELSVRGMSVTTLRSTLEACPDSAFSTWLGAADRPVGCGDDGEANDEGLGGRTSEDCRRKVDCDPSCFSKILDVMRMRKRAAWV--TDDQQGALIREAGGGHTVRIPVPESDRACFKNLVHTLFPECEDFVMDMIE 622          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66.17446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAP0_9PHAE1.350e-24365.35TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIX7_ECTSI6.320e-19755.87BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIY4_ECTSI3.630e-19292.67TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JD55_9PHAE1.190e-17756.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H5_ECTSI7.010e-15146.52TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L232_9PHAE8.700e-14343.40TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIV0_ECTSI9.260e-12444.72TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JQU4_9PHAE3.780e-11942.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCR8_9PHAE5.670e-9438.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G141_ECTSI5.900e-9336.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66contigEcto-sp13_S_contig66:25333..34833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score123.2
Seed ortholog evalue3.9e-25
Seed eggNOG ortholog2903.EOD06308
Model size2659
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.TLD
EggNOG OGs2E2SS@1,2S9ZF@2759
Cds size1746
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463909.5571828-UTR-Ecto-sp13_S_contig66:25332..254111681463909.5571828-UTR-Ecto-sp13_S_contig66:25332..25411Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66 25333..25411 +
1681463909.5695074-UTR-Ecto-sp13_S_contig66:30981..310091681463909.5695074-UTR-Ecto-sp13_S_contig66:30981..31009Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66 30982..31009 +
1681463909.5921676-UTR-Ecto-sp13_S_contig66:32755..327941681463909.5921676-UTR-Ecto-sp13_S_contig66:32755..32794Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66 32756..32794 +
1681463909.6037505-UTR-Ecto-sp13_S_contig66:34066..348331681463909.6037505-UTR-Ecto-sp13_S_contig66:34066..34833Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66 34067..34833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463909.5799782-CDS-Ecto-sp13_S_contig66:31009..327551681463909.5799782-CDS-Ecto-sp13_S_contig66:31009..32755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66 31010..32755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66.17446.1prot_Ecto-sp13_S_contig66.17446.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66 31010..32755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66.17446.1

>prot_Ecto-sp13_S_contig66.17446.1 ID=prot_Ecto-sp13_S_contig66.17446.1|Name=mRNA_Ecto-sp13_S_contig66.17446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=582bp
MLRFQSNEQKTFSEILEAAARETNDILSQRRKVMDQAWGDIDEGWQALQE
HMAKVGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGNGATSALGNLCE
AEWDKRIPRDSDGRIVLDESPTCVKHLFHDLLTTPSLAKGTVGREDDFAR
DETPDLLRYTARVLGLSGHLAPIGMPITGGTTIFEPHEASRMTAVVQGWC
PGHPGRLELLYRASRDGWNSAAFQATCGDDSPSTITFFRVKGQGTGGTDS
IVGGFSSVPWTPPGGSTGYTASPGAFLFMLKGEGKGIGSASIQPMKWGVK
GGPAGNDAVFRGPAYGPIFGKGYDLTVLWKVAENTLRTRNHTYEVPAGSL
FLSLDARAVVDVETFRVCCKPTDTLASTKPRHHSVGDAAVPPAPVTATDD
VLTFGHLIAYSLMQEEMVLQEARNELALATARTTACEAAMVAVYGPDVAN
GQEEDVVELSVRGTRVTTMRSTLRICPDSAFATRFDEDQWPAAENDLDDY
GRRVIDCKPSVFSKVMDILRMAKRASWGRGNDDQEANETPRVTIKACDRV
EFEEFVDFYFKGCESFIMEYVESLGDKEANR*
back to top

mRNA from alignment at Ecto-sp13_S_contig66:25333..34833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66.17446.1 ID=mRNA_Ecto-sp13_S_contig66.17446.1|Name=mRNA_Ecto-sp13_S_contig66.17446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66:25333..34833+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGCTTCCTCTGCCCCTTCCCACCAATCATCGCGCGCGACCGACCCAGG GCTGCCCCGAGGGCACAGCAACATCGCAGGTGTGTAATATTGTAACATTT GAACCTCCGTGGTCTCATCCAGCAAGTTGAAACTACGCTGTAACATGTAG CTTCGCGGACCGTGGTCTGCTGTGAAGCAAGTTAAGGGCCTGTACGTCCG TACCGACTCCCCCGCCGTGTTTGCAACAATGGAAACACCTGCTTCACGCG CTCTTGTAGAAAAACAGGAGCCACATTTGCGCCTCCTTCAACAAACAAAG GCACACGGCACATAGCGATGAGTGTCCGTCGCCGCGCCCAGCCTTTCAAG CAAATCACGTAAACAGAGTTCACCCTTCTGCACCATCCACTAGCCTCCTA CAGTATAGGATATGTAGTACCCAGATAAATTATTAGTTACAGGTCACCAA GTTGAGGTCACAGGTCATGAGTGCAGAACAATCACGCCGCTCATTGGGAC AGGCTGTACAGTCCAGAGGGCGCAGAGCTGACGTGGCTTCAGTATCGAAA GTGTCTCCAATGTACATGAGAGTAAAATTAACCCGATTCACGGACCGGCA ATAACGGGGTGGACTTTTTTGGGCCTTTTCGCGCTTCATCCATTTTTTGG TCTACACAGACGCGACTTCAAACGGTAGATCTTCACAGGATCAGAACACA GAAATGTTCGCCTGTGCCAATACAGTGGGGGCCCCGGTTTAGCGACGCCT GTTTGACGACCCCCTGTTGAGCGACATGCATGCGCTGTTTAGGACCCCGA AATCTCGTGACACCGCTGCACCGCGGTTTAACGACCAGGTGGTCGCCAAA CCGGTCGAACCCTTAGTCGCCGGCAAAACGGGTGCCGATACGATGTTCGA AAATATTGGTGAAAAATTGAAGATTATCGATGTTTTTCCGATGTTCGCCA AAGTGGCCGATGTTCCAATTATCGATGTTTCGAACGATATTGCCCAGAAA ATCTCAACCGTACAACAAAACCTTGTCTTCCTGTCTGTTCAAGATCAAGA TTGATTCTATGGTCTAGCTTCTACAGCAGGCGCGATACTACGATGGATGA TGCCGTACACCGCTGAGACGAAAAGTGTAATGATGTAGCCGACGTATGTA TTTATGTGGACCTGTGGATCTTGCATTGCAAATATTTTGGCCCAGAAGGT ACGTGGCGTTTGGAAGGTGTGCGAAGCTCCGGGATAGAGAAGCAACTTGG AAGGGCATACGAAAGGCACATAGGTTAAACTTAGTGATGTAGAAGTAGAT GGAATTGAACTTTTCGCAAACCGAACCTCTACAAGCTTTTTTCTGTCTGA AAAATAGTCAGGCAAGAACCCTGAGACTAACCCGTATATGGTTTTAACTG TTACCAGTCTTGCAGAACAACACGCAGAAAAAATAACAAGGTGCTGTCAT TGGGGGCAAAGCAGAAAGCTGAAAGGCTCATGTAATGGTTTGCGGTGTGC GGGCCCGAGCATAGAGGGCGTGCTGTTCGCTGTGTGCTGTGTGTTCAGTG TGCTGCTGTGTGTTGTAGTTGGCGTTATCAATTCAAAGTACTGTAGTGTG TACATGCTTGGGGGGGCCGTGTCTGAAAATATCGTATCGCATATCGTCGA TACTCGATGTTCGATGTCGATACTCTATCGACATATCGGCAAAATAAGTT CAGCGATGTCGATGTTGAGTATCGCTGAAATGTCGACATCGAATGCGGCA AATCGATACGCGATGTCCATCACTCCTAGCGACTTACGTTTTCTTCAGCG GGATAGAGACCACCGCGCTCCTCTGCACACAAAGACACAACAACAGCGGG ACACGTACACACACGCAACAATGCCGGGCGCCGATGGAGAGTTGTGCAAA CAGCCGGATGTGGAAGTGCGGGCACCCCAGGGGCATGTTTGCCGTGGCGG TTGCGGTGGACGCCTGCACTGGATGTGTGGGGAGGTGGAGGTTTTCGATG TCATCGAGATGCACCGCACCTGCAACGAGTGTGCATCGAAGAACATGCAG GATTCCCCACCCGCCTCGAATCCACCCAACCGCGAAGAGGCAAAACATTG CCAAGGCTTTGCAGAAGGACGCAAACGACGTCCTCATCGAGAAAATGAAC GATACCTACTCGGAGGAGACCATACCTTCCGACGATAAGATAGAGCGCGG GGGGTGGGCAAGCGATGGCCCCGCCGCCCTTCGGAGCTTTCGTCGCATTC TGGATCGCTACAAGAGTGCACGGAGTTGTGGAGGTTAAGCGAGGAGAGTA TAACCTTCGCACGGCAAAGATGCTGTTCATCGAAGCACACTCCGCGAAAC CAGCGCGACGGAGCGGCATAAGAGAAGGGTTAGTTAACATGATAGGTACA CGCGACAGTAGCAGAATGAAGTCATTAGCAGCGCGAGGTTCTTTGCCGCT TGGGCGTTCACGAACTTTCTCCGTGCCATGACTTTTTGTTTTGGGGGGTG CGCTGCCATGACTGTTTCGCCTTTCCCGCCTTTTTGTTGTATTTCGCACA TGGGACTTCTACGTGTTTTTTTTTGTGTTGGTCTACATGTAGGAACAGAT TTTTCAGCATGCGGGAACATAAAGAGACACAGGGCACCCTCTGTACACTT GTCATTATAATGAGACATTTCCTACAAACTTCGGAGGGTAAAACAAGCTT GCTGGTTGATTGGAATGTAACATACCGTACAGGAACTACTCCCCGGTCGT CCAGCCTACGGTGCTTCTTCTTTCCTCTACCTTCATGTGACTGCTGCAAT AAGACGCATACATGACCCGGTCAAGAATAATTTTTCTGAAACATGGCCTT TAGTCCCACGATGGCGCTTCTTCCCGGTGTAGCGACCGCTAGTCGCTATT GACGCTCCCGGTTTGGCGACATGCCCTAAATAGCGACCATACTTCGTCGT GGTACTAGGGGTCGCTAAACCGGGGGGGCGACGGTAGAAGATAGGGCAGA TGGTGTTGGACTGGGGGGCTTCCGTGGTTGTCCAGCAAAGTTTATGGCGG GAAAAAGCCATTATCTGAGGGACTGGATATTGGCACCATGTTGCGTCGTG GCCGCTACTCAGTCAGGCAGGCAGATGATGATAATACACCCGTTGTCGTT CATTTCGTGTTAAAAAAACGAGAGGAGATGAGAGAGAAGCACACACACAT ACTACACACACAGCATCAACGGCAACAACAGCAGCAAAAACGTCCAGCCT CCCAAAGTCTCGACTCGGAAGGACCGCACTTACTCCCCCACAGATAGTGG GACAGTCCATATGCCCGGCCAGCTGTTCACTTTCGTCGGCCCGTGCTTGC TCGCGACGGCATCAGAGAGAGACGGCAACGAAGCGAGCGAGAGGGTAGGG GAAAAGAAAAGACAAAAGTGTGCAGCAGCAGCAGTCGCAGCGGCAAGCAG CACCAACAGCAGCAGCAGCAGCATGCAGCAGCAGGTGATACATATATGGA GGCTGTTTTGATATATATGGAGGCAGCACAAACAACAGTAGTCACGGCAG TGCCGGAAAGCTTTGGGGGCTGGCGGTGATGTTTGCTGCCAGAGAGAGAG GAGGGAAGCAAGGCGGATCAGAGTCGCGAGACACAGGAGGGGAAGAGAAG AAGAGGGAGACAGGAGACTGCTCGTCTCGGAACAATAAATATATACTTGG GACTCTGGGACTCTGGAGCCCCAAACATAAACTTCCTCACGATTCAAGCA TTTTGAAAACCAAGGTCCACTCCGCCCTTCAACTCGATTCATCCTCTGTC CGGGATGTTACACTGGATTTGGGCATTTTTCTGAGTTTTAAATTACTCTC CACTGGGAACAAGCTGGGGACACTCAATACACTGAGGCCCGAACCGATAC CGATTTACCAACAGGGGACCCACCCGCCGCTTGGGAGATGGTGTACAGCA AGTCATAGGCCGAGGAGAGGCACACAGGTATCACACAGAGCAGTGTGTCA CACAGCGTACTACCTCACACAACCATGCTACATAGAGCAAGGTTTCCCAC GCACCATCACGCAGCGGAGCATGGTGACGACCACGGTGCGTAAAACAGAG GCACTTGAGGGCTGTGGCCCCAAGTGTCCCCATTTGGGCCAGTACTACGT GTAGGAGGGTTAGACCTCGCACGTGACAGGCGAAGATTTTTCAAGTACCG AGAGCGAAGGCGAGTCTAACGCGCCCGCCTTATATTTCTTACACACTCAT CACCCGGCGAGCGTCGGAAAGAAGGAAAAGTACCGACCCAACAAAATAAT ACCAACGGAATTCTTCGACCGCTTTTGTAGTGACATCGAGGGATTATTTC TTAACGTACGTGGGCCAACAATTGTTGCGCTTTCGTTCTGGTCTGTGACC CACCACTCGGTCCCCGCATCCATCCCTTTTTCAGCCATAGTTGGTGACGG TATCTCTTTGAACAGACACACAAGATGGCCACCAAAGTGTATTGTTGAGC CTGTTACCCACAGGGGAGATGTCGCTGTGTGCTGCTAGGGATACGTAGAA ATATGGGTAGTCTCCGCTGACGATATGCATTTCATTTGCTTGTCTATGAT CATGTAGAATAGGCTCGTATAGAGATATTAATGTTATAAGCCATCAATAA AGAAACCAGCATGCATCGAATCGGAACGCAGAGTTTCCAAAAGCATCAAG GATTCGTTCCATTGAGGTAAGTTGGCAAAGAGTGCACTTGCAACACAGTT CGAGGGAGCCTCTTCACACGCCACATCACACACGCTGCACACGAGATGAT ACCCTCCTCGCATGCTGACCAACAGCAGCGCGAGACATACTGCAGCAGCA GCAGAAATGTGCCCCCGTTTTCTATGGCTTTGCACCCCTTCCACCGAGTT TGTGCCATAGGTAGGGTGGTTCCGAACCGCGCAACTCTCAAGGGGCTCGC AGGTTTCGGCGCCGTCTCCCCACGTCGACATACAACTGCCGGCCCGCGCA ATTCTCAAGGAGCCCACCGGCCGTAGCCCCAACTACCCATCTCCACATGA CTGCGATCCAGCACCTCAACACCTCAACCACATCTTATTCGTTGTTGTGC CGACCATTCAACTCAAACTGTAGGTCTAGTGTTGCTATAAAACCGGTAAA TAATCCGCACAATGTTTCTACCACAGTTTCTACCACAGTTCTGTGGATCT TGCTGTTCCGACTGTTGGCGTGGGTGTGAAGTGTGGGTGCACCAATCTGG TAAAGACCAGCCATTTTGAGTACGTGGGCGGACCCTCGAATAAATGTTAA ACCTCACAAGTCAAGTAATTTAGATTGTACGCAGAGGAGGACCTGGTTTT CCCGCAAGCACACCATGACACACTTATAGATTTGCCAGCACCCGACACGC GGGGCTAACAGGACGGCAGTTCTACGACTTGATACCGCACCAGCTCCATG AATTGCTACAACACCTCAACACTGTTGAAATATTTTTTTTTTGACGAGAT GATCGTGATGAGTAGATTGAGCGGTTCGAGCGTTTGAGGACGGTGCTATT TTTGTGAGACAAGTGTTGCAGGAAGTACGTGCGTGCATCGTTCCACCAAT GTATCCCGGGCGCCCGTCTGCACCTTTCACTTCGTTGAAGTGCTACCAGG TGTCGCGAAAGTGAGAACGGCCACAAAATGCTTCGTTTCCAGTCCAATGA GCAGAAGACCTTCTCAGAAATACTGGAAGCGGCCGCCCGGGAAACAAATG ACATTCTTTCTCAGAGGCGGAAGGTGATGGATCAGGCGTGGGGCGACATT GATGAGGGATGGCAGGCGCTCCAGGAGCATATGGCAAAGGTCGGCATTAC AAAGCCCTTAGACTTGAAGGAAGGACTGGTGAAGTTGAATGTTGGCGGCT CGCTTCTCGCCTTTCGTCGCTCGGTCTTTGAGGGTAAAGGAAATGGTGCG ACTTCGGCGCTGGGAAACCTGTGCGAGGCTGAGTGGGACAAGCGCATTCC TCGTGATTCAGATGGCCGCATCGTGCTTGACGAGTCGCCGACGTGCGTCA AGCACCTGTTCCACGACCTTCTTACCACTCCGTCCTTGGCCAAGGGTACG GTAGGTCGCGAGGACGATTTCGCCCGCGACGAGACACCCGACCTTCTCCG CTATACGGCACGCGTCCTCGGTCTGTCGGGACATTTAGCGCCCATCGGAA TGCCGATAACGGGAGGGACAACCATCTTCGAACCTCACGAAGCCAGCAGG ATGACTGCTGTCGTTCAAGGCTGGTGTCCTGGGCATCCTGGTCGGCTGGA ACTGCTCTACCGTGCTTCCCGCGACGGCTGGAATAGTGCCGCCTTCCAAG CTACGTGTGGAGACGATAGTCCCTCGACGATTACCTTCTTTCGGGTGAAG GGCCAAGGGACAGGTGGGACGGACAGTATCGTCGGAGGATTTTCCAGCGT TCCGTGGACTCCTCCGGGTGGTTCCACAGGCTACACCGCTTCCCCCGGGG CATTCTTGTTCATGCTCAAGGGCGAAGGCAAGGGAATTGGATCGGCCTCC ATTCAACCAATGAAGTGGGGTGTCAAGGGTGGGCCGGCTGGGAACGATGC CGTTTTTCGTGGTCCAGCATATGGACCCATCTTTGGAAAAGGATATGACC TGACCGTGTTGTGGAAAGTAGCCGAAAACACACTCCGAACGAGGAACCAC ACGTACGAGGTACCTGCCGGGTCTCTTTTTCTCTCACTCGATGCGCGCGC CGTGGTCGATGTCGAGACATTTCGCGTGTGTTGTAAGCCGACGGATACCC TCGCTTCGACCAAACCAAGACATCACTCCGTCGGAGACGCAGCGGTACCG CCGGCACCTGTGACTGCCACGGACGATGTCCTTACCTTCGGGCACTTGAT TGCTTATTCATTGATGCAAGAGGAGATGGTGCTTCAAGAAGCCAGAAACG AACTTGCCCTCGCCACGGCCAGGACGACCGCGTGCGAAGCAGCCATGGTG GCGGTGTACGGCCCAGATGTGGCAAACGGACAAGAGGAAGACGTTGTAGA GCTGAGCGTACGCGGGACCAGGGTAACGACAATGCGCTCCACCCTGCGCA TTTGCCCTGACTCCGCCTTTGCCACTCGGTTTGACGAGGACCAATGGCCG GCGGCGGAAAATGATCTCGACGACTACGGGCGGCGTGTGATCGACTGCAA GCCATCCGTCTTCTCCAAGGTGATGGATATACTGCGTATGGCAAAGCGCG CGTCATGGGGTCGTGGTAACGATGACCAGGAAGCGAACGAGACACCTCGC GTCACCATCAAGGCCTGTGACCGTGTGGAGTTTGAAGAATTTGTGGACTT TTACTTCAAGGGCTGCGAGAGCTTCATCATGGAATACGTCGAATCTCTTG GTGACAAGGAAGCCAACCGCTGAGCACCCGGTGCAAGCGCTTACGGAACA GGTTGGGCTACGGTAAGCACTTTGCGTTGAGAACATTCGAGCAACGTGAA TGAGAAAACAGTTGCAGCCGCTACTATTGTGTACAGGCTCCCACATCATG ATCTCTCATCCTTGGCTATATGTCTTTTGCATACAGTAATGCAGCACATG GTGTGTTTCTAATCTATTCGCAGAGAGGCTTCGACCTGCAAGGTTCTCCT TTTCGGAGACTGACCAGTAAGCCTATCGACTGGTCTTGTAGATGTGTCAT TGGCACTGCTAGTGGCACCTCTTTCATCCCATCTTGTGGCTTACCTTCTT GATTGGAGGTAGAAGAAGTTTCGGACGATCTATCTATATGTATGTGGATA CTTCATGCTTACCTGTAACAGTTGGCTACGTGTGTTGGTGTTCCTTGTCA TACGTCGTCCTCCACCTTTCCGGAGATTAGAAGGCTTAGTGGGATAGGGT TGCTCAACCATCGTCTGATTGACCTCTGGTCTCTGACTCAAGGTACGAAA GGCGCCTGTAACCGTCGTTGTTGCAACACACAATTTCAATGGTACTGTGG TCCCAGACACCGCGTGAGCTATGACCAAGGTCAAAGCATGCTTCACGTCG TTTGCATTTACAGCATGCTGTCAGGGATGTCCGCGCCGGATTCCGCATGA GTAGATCTCATCTTTCCCGGCACTGTGTTCGAACATGTATGCGTCCCACT TCCGTGTGATTGCTCGAATGAAAAATGGGTGGAATTGCCCCCCTGTTGAA GACGCCCCTTCTGGGCACCTGCTTGCGGCCCACCTACAGTTTGCAGTTTT CACACAAGATTTTTGCGTATGATCGTGGTGCAGACTATTGCCATACGCAT TCGTGAATAGAAAACATGTTTATAACCCGTTCAAACTTCGGCCCGAACAA GCCTGTAGACGGTGTATCAGTTAGGTAGGATCAACTGTTACCCCGCAATG ATATCTCGCGACCAACAAGATAGGCAAGTTTTACGTACAAGTTTCAAGTG CCTCGTAGCGCCACTAACGTTTCATCTCTGATGTTGTTTTCTCACGTTCA TGGTGGCGAATACAGCCCTCTTTCTTCTCAAAGTATATGGATGATCCCGA AGAACTACTGCATCGCGTTCGCTCGGTGGGTTCTGCTATAACGGTCGACA GGTTTACCGCGTAAACCCGAAAAAGGTCGGCTTTCGCGCGAGAGCCAAGA ACGATTCACAGCCAATATTTGAAATTCTCCTGACAAATCTCACGCGTCCC GCTCCATGCCTCCTTAACGTGTCCCTGAAACAAGGTGCGACGATCAGTTA CCAGTACCACGCTTGCTGCTGGCCTGCCTGGGTAGCTGCTGCGGGCCGGA GGTGCCAGCAAGTTGTTCTTGGCGGTCTGCCTGTTCATCGAACCAAGCAA CACAAGGACATAACGGTGGATTCTCACCGGTCGTCGAATATGCAGACGGA GAAGAGTGAGACGAGAAGTTTCTTCGAGAATGAGTGCATAGGAGTTATAC CCATACGCCAACACTAGGCGTGGTGGGTTTCATTCCAGCAGGAAGGGGTT CTACTGTCGTGGAATGACAGAAGCATGGAACGGGTACATTCAAGGGTGCC CGCACTTGGCGTGAGTACGGTCAACGAGTGAATCCGCCATGCGAAGGAGC GCCGCGGGGGCGTCAACAGTTTCCAAGAAATTCCCGTTTACGAATAACTT GGGGTTTGCGTTGATTGGGTAACGGGGCCTTTCGTCGGCTTAGTGGGGGC TGCATTGCGAGTAGGTGGCGCCAGACGTTGGGTTAGTTTCTGCTTCGTGT TCGGCGAAATATCCTTGGGAATCTGTCCCGGGTTTCTGTCGCCGTGAATA AATGCTGTTTCAGATCTGATGGGAATTGGACGTGCATAAGTCATGTGATG CGTTTGGCGCCTTGGTGTACGGGCCGCCTTTGGTGGCGAATGGCTGCGCA GGGCGTGTCGCCTTCGGCAGTGCAACCCGGTCGTTATCGAGCCGTGATCT GGCCCATGACTGGGTCATGATACATTATAATAATGGTGCGCTCACAACAA A
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66:25333..34833+

>mRNA_Ecto-sp13_S_contig66.17446.1 ID=mRNA_Ecto-sp13_S_contig66.17446.1|Name=mRNA_Ecto-sp13_S_contig66.17446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66:25333..34833+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCGTTTCCAGTCCAATGAGCAGAAGACCTTCTCAGAAATACTGGA
AGCGGCCGCCCGGGAAACAAATGACATTCTTTCTCAGAGGCGGAAGGTGA
TGGATCAGGCGTGGGGCGACATTGATGAGGGATGGCAGGCGCTCCAGGAG
CATATGGCAAAGGTCGGCATTACAAAGCCCTTAGACTTGAAGGAAGGACT
GGTGAAGTTGAATGTTGGCGGCTCGCTTCTCGCCTTTCGTCGCTCGGTCT
TTGAGGGTAAAGGAAATGGTGCGACTTCGGCGCTGGGAAACCTGTGCGAG
GCTGAGTGGGACAAGCGCATTCCTCGTGATTCAGATGGCCGCATCGTGCT
TGACGAGTCGCCGACGTGCGTCAAGCACCTGTTCCACGACCTTCTTACCA
CTCCGTCCTTGGCCAAGGGTACGGTAGGTCGCGAGGACGATTTCGCCCGC
GACGAGACACCCGACCTTCTCCGCTATACGGCACGCGTCCTCGGTCTGTC
GGGACATTTAGCGCCCATCGGAATGCCGATAACGGGAGGGACAACCATCT
TCGAACCTCACGAAGCCAGCAGGATGACTGCTGTCGTTCAAGGCTGGTGT
CCTGGGCATCCTGGTCGGCTGGAACTGCTCTACCGTGCTTCCCGCGACGG
CTGGAATAGTGCCGCCTTCCAAGCTACGTGTGGAGACGATAGTCCCTCGA
CGATTACCTTCTTTCGGGTGAAGGGCCAAGGGACAGGTGGGACGGACAGT
ATCGTCGGAGGATTTTCCAGCGTTCCGTGGACTCCTCCGGGTGGTTCCAC
AGGCTACACCGCTTCCCCCGGGGCATTCTTGTTCATGCTCAAGGGCGAAG
GCAAGGGAATTGGATCGGCCTCCATTCAACCAATGAAGTGGGGTGTCAAG
GGTGGGCCGGCTGGGAACGATGCCGTTTTTCGTGGTCCAGCATATGGACC
CATCTTTGGAAAAGGATATGACCTGACCGTGTTGTGGAAAGTAGCCGAAA
ACACACTCCGAACGAGGAACCACACGTACGAGGTACCTGCCGGGTCTCTT
TTTCTCTCACTCGATGCGCGCGCCGTGGTCGATGTCGAGACATTTCGCGT
GTGTTGTAAGCCGACGGATACCCTCGCTTCGACCAAACCAAGACATCACT
CCGTCGGAGACGCAGCGGTACCGCCGGCACCTGTGACTGCCACGGACGAT
GTCCTTACCTTCGGGCACTTGATTGCTTATTCATTGATGCAAGAGGAGAT
GGTGCTTCAAGAAGCCAGAAACGAACTTGCCCTCGCCACGGCCAGGACGA
CCGCGTGCGAAGCAGCCATGGTGGCGGTGTACGGCCCAGATGTGGCAAAC
GGACAAGAGGAAGACGTTGTAGAGCTGAGCGTACGCGGGACCAGGGTAAC
GACAATGCGCTCCACCCTGCGCATTTGCCCTGACTCCGCCTTTGCCACTC
GGTTTGACGAGGACCAATGGCCGGCGGCGGAAAATGATCTCGACGACTAC
GGGCGGCGTGTGATCGACTGCAAGCCATCCGTCTTCTCCAAGGTGATGGA
TATACTGCGTATGGCAAAGCGCGCGTCATGGGGTCGTGGTAACGATGACC
AGGAAGCGAACGAGACACCTCGCGTCACCATCAAGGCCTGTGACCGTGTG
GAGTTTGAAGAATTTGTGGACTTTTACTTCAAGGGCTGCGAGAGCTTCAT
CATGGAATACGTCGAATCTCTTGGTGACAAGGAAGCCAACCGCTGA
back to top