mRNA_Ecto-sp13_S_contig6593.17434.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6593.17434.1
Unique NamemRNA_Ecto-sp13_S_contig6593.17434.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6593.17434.1 vs. uniprot
Match: D8LFD9_ECTSI (UBP-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD9_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 6.210e-36
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = -2 
Query:    3 TELPPCPVCIDRLDPAVSGIPLARSGSKSSSXXXXXXXXXXXGTTGAILGSCRHRDCNSRGGKAGEASTEAAATAAAA---GSAPRPKSGVSDDDSAGHDPVCEKKEAGPRGQALGG 344
            TELPPCPVCIDRLDPAVSGIPLARSGSKSS XXXXXXXXXXX  TGAILGSCRHR+CNSRGGKAG                GS+P PK  VSDDDSAGHDP CEKKEA P GQALGG
Sbjct:  473 TELPPCPVCIDRLDPAVSGIPLARSGSKSSXXXXXXXXXXXXXITGAILGSCRHRECNSRGGKAGXXXXXXXXXXXXXXXXGSSPGPKCSVSDDDSAGHDPGCEKKEASPTGQALGG 589
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6593.17434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFD9_ECTSI6.210e-3676.92UBP-type domain-containing protein n=2 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6593contigEcto-sp13_S_contig6593:558..907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size352
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463908.4205415-CDS-Ecto-sp13_S_contig6593:557..9051681463908.4205415-CDS-Ecto-sp13_S_contig6593:557..905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6593 558..905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6593.17434.1prot_Ecto-sp13_S_contig6593.17434.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6593 558..905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6593.17434.1

>prot_Ecto-sp13_S_contig6593.17434.1 ID=prot_Ecto-sp13_S_contig6593.17434.1|Name=mRNA_Ecto-sp13_S_contig6593.17434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
FPPNACPLGPASFFSQTGSCPAESSSLTPLFGRGADPAAAAVAAASVEAS
PAFPPLELQSRWRQLPRIAPVVPPSPLPPSPPPLLLLLLPLLANGIPETA
GSRRSIQTGHGGSSVL
back to top

mRNA from alignment at Ecto-sp13_S_contig6593:558..907+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6593.17434.1 ID=mRNA_Ecto-sp13_S_contig6593.17434.1|Name=mRNA_Ecto-sp13_S_contig6593.17434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6593:558..907+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCCGCCCAACGCCTGTCCCCTTGGGCCGGCTTCCTTCTTCTCGCAGAC
AGGGTCATGCCCGGCTGAATCATCATCGCTGACACCGCTTTTCGGGCGTG
GCGCGGATCCCGCGGCGGCGGCAGTGGCGGCTGCTTCCGTTGAAGCCTCT
CCCGCTTTCCCCCCTCTAGAGTTGCAGTCTCGGTGGCGACAGCTGCCGAG
AATCGCCCCCGTAGTGCCGCCGTCGCCGCTACCCCCCTCTCCCCCGCCGC
TGCTGCTGCTCTTGCTGCCGCTCCTCGCCAACGGTATACCGGAGACGGCT
GGGTCGAGACGGTCAATACAGACGGGACATGGCGGGAGCTCGGTTCTGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6593:558..907+

>mRNA_Ecto-sp13_S_contig6593.17434.1 ID=mRNA_Ecto-sp13_S_contig6593.17434.1|Name=mRNA_Ecto-sp13_S_contig6593.17434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6593:558..907+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCCGCCCAACGCCTGTCCCCTTGGGCCGGCTTCCTTCTTCTCGCAGAC
AGGGTCATGCCCGGCTGAATCATCATCGCTGACACCGCTTTTCGGGCGTG
GCGCGGATCCCGCGGCGGCGGCAGTGGCGGCTGCTTCCGTTGAAGCCTCT
CCCGCTTTCCCCCCTCTAGAGTTGCAGTCTCGGTGGCGACAGCTGCCGAG
AATCGCCCCCGTAGTGCCGCCGTCGCCGCTACCCCCCTCTCCCCCGCCGC
TGCTGCTGCTCTTGCTGCCGCTCCTCGCCAACGGTATACCGGAGACGGCT
GGGTCGAGACGGTCAATACAGACGGGACATGGCGGGAGCTCGGTTCTG
back to top